Viral OTU vOTU-132878

vOTU: vOTU-132878

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster Properties
vOTU ID	vOTU-132878
Number of Genomes	1
Taxonomy (ICTV)	root → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vOTU-132878
Host Lineage	Bacteria → Desulfobacterota_I → Desulfovibrionia → Desulfovibrionales → Desulfovibrionaceae → Desulfovibrio → Desulfovibrio fairfieldensis
Viral Lifestyle	temperate

Representative Genome
Genome ID	UHGV-0101646
Biosample ID	N/A
Length	43,076 bps
CheckV Completeness	76.26% (Medium-quality)
CDS Count	60
CDS Density	92.30%
tRNA Count	1
Viral Confidence	Confident

Representative Genome Content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 76.26)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
eggNOG-mapper	UHGV-0101646_1	457398.HMPREF0326_05745	72.0	5.25e-17	N/A	N/A
KOfam	UHGV-0101646_2	K04763	126.6	3e-37	xerD; integrase/recombinase XerD	N/A
PHROG	UHGV-0101646_2	phrog_1	151.7	5.60519e-45	integrase	integration and excision
UniRef90	UHGV-0101646_2	UniRef90_UPI001D09D6D2	364.0	0	site-specific integrase	N/A
eggNOG-mapper	UHGV-0101646_2	1121413.JMKT01000011_gene2347	236.0	0	Phage integrase family	N/A
Pfam	UHGV-0101646_2	PF13102	N/A	N/A	Phage integrase SAM-like domain	Phage_int_SAM_5
Pfam	UHGV-0101646_2	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0101646_2	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0101646_2	PF00589,PF13102,MF_01807,TIGR02224,COG4974	N/A	N/A	N/A	N/A
UniRef90	UHGV-0101646_3	UniRef90_UPI000DED31E7	54.7	0.00000342	ead/Ea22-like family protein	N/A
PHROG	UHGV-0101646_5	phrog_2260	66.3	6e-19	N/A	unknown function
UniRef90	UHGV-0101646_5	UniRef90_UPI000D65EE28	59.3	0.000000109	N/A	N/A
Pfam	UHGV-0101646_5	PF17457	N/A	N/A	N/A	DUF5420
eggNOG-mapper	UHGV-0101646_6	665942.HMPREF1022_02886	134.0	5.84005e-41	N/A	N/A
UniRef90	UHGV-0101646_7	UniRef90_A0A7W8C1M3	231.0	0	DNA-directed RNA polymerase subunit RPC12/RpoP	N/A
eggNOG-mapper	UHGV-0101646_7	665942.HMPREF1022_02888	773.0	0	N/A	N/A
KOfam	UHGV-0101646_8	K03657	377.8	0	uvrD, pcrA; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]	N/A
PHROG	UHGV-0101646_8	phrog_1967	304.4	0	DNA helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0101646_8	UniRef90_G1UWB6	1148.0	0	DNA helicase	N/A
eggNOG-mapper	UHGV-0101646_8	665942.HMPREF1022_02889	1148.0	0	UvrD-like helicase C-terminal domain	N/A
PADLOC	UHGV-0101646_8	GajB_00012	188.9	0	UrvD helicase	Gabija
Pfam	UHGV-0101646_8	PF00580	N/A	N/A	UvrD/REP helicase N-terminal domain	UvrD-helicase
Pfam	UHGV-0101646_8	PF13361	N/A	N/A	UvrD-like helicase C-terminal domain	UvrD_C
COG	UHGV-0101646_8	COG0210	N/A	N/A	Superfamily I DNA or RNA helicase	N/A
structural_annotation	UHGV-0101646_8	PF00580,PF13361,PF12073,MF_01920,NF008743,COG0210	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0101646_10	665942.HMPREF1022_02891	348.0	0	N/A	N/A
UniRef90	UHGV-0101646_11	UniRef90_I2Q066	156.0	1.52994e-41	AAA_23 domain-containing protein	N/A
eggNOG-mapper	UHGV-0101646_11	665942.HMPREF1022_02892	588.0	0	N/A	N/A
PHROG	UHGV-0101646_12	phrog_32428	67.5	1.3e-19	N/A	unknown function
eggNOG-mapper	UHGV-0101646_12	665942.HMPREF1022_02893	814.0	0	N/A	N/A
UniRef90	UHGV-0101646_16	UniRef90_UPI0013ECC8D4	79.0	6.34e-18	N/A	N/A
eggNOG-mapper	UHGV-0101646_16	1433126.BN938_0692	68.6	0.0000000000000149	N/A	N/A
Pfam	UHGV-0101646_16	PF12989	N/A	N/A	N/A	DUF3873
KOfam	UHGV-0101646_17	K15546	56.8	4e-16	boxR, bzdR; XRE family transcriptional regulator, aerobic/anaerobic benzoate catabolism transcriptional regulator	N/A
PHROG	UHGV-0101646_17	phrog_5823	44.2	0.0000000000027	transcriptional regulator	transcription regulation
UniRef90	UHGV-0101646_17	UniRef90_A0A2V2FZ25	97.1	7.62e-24	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0101646_17	667632.KB890164_gene1726	60.1	0.00000000334	Helix-turn-helix XRE-family like proteins	N/A
PADLOC	UHGV-0101646_17	retron_type_VI_hth_cluster2_1	49.8	0.000000000000096	N/A	Retron
Pfam	UHGV-0101646_17	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0101646_17	COG0662	N/A	N/A	Mannose-6-phosphate isomerase, cupin superfamily	N/A
UniRef90	UHGV-0101646_21	UniRef90_UPI0013EBDF4E	285.0	0	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0101646_21	665942.HMPREF1022_02897	326.0	0	N/A	N/A
Pfam	UHGV-0101646_21	PF06892	N/A	N/A	Phage regulatory protein CII (CP76)	Phage_CP76
UniRef90	UHGV-0101646_23	UniRef90_UPI0013EC5EF3	137.0	3.03e-40	N/A	N/A
Pfam	UHGV-0101646_23	PF14076	N/A	N/A	N/A	DUF4258
PHROG	UHGV-0101646_25	phrog_9298	199.8	0	radical SAM domain protein	other
UniRef90	UHGV-0101646_25	UniRef90_A0A358LEG9	273.0	0	Radical SAM protein	N/A
eggNOG-mapper	UHGV-0101646_25	665942.HMPREF1022_02900	445.0	0	radical SAM domain protein	N/A
COG	UHGV-0101646_25	COG1032	N/A	N/A	Radical SAM superfamily enzyme YgiQ, UPF0313 family	N/A
structural_annotation	UHGV-0101646_25	MF_01864,TIGR01579,COG0621	N/A	N/A	N/A	N/A
KOfam	UHGV-0101646_26	K00558	235.2	0	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	N/A
PHROG	UHGV-0101646_26	phrog_116	251.3	0	DNA methyltransferase	other
UniRef90	UHGV-0101646_26	UniRef90_A0A0X8JK57	794.0	0	DNA (cytosine-5-)-methyltransferase	N/A
eggNOG-mapper	UHGV-0101646_26	1408428.JNJP01000034_gene1488	558.0	0	Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family	N/A
PADLOC	UHGV-0101646_26	MTase_II_00020	106.2	2.7e-36	Type II methyltransferase	RM
Pfam	UHGV-0101646_26	PF00145	N/A	N/A	C-5 cytosine-specific DNA methylase	DNA_methylase
COG	UHGV-0101646_26	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
structural_annotation	UHGV-0101646_26	PF00145,MF_00351,TIGR00675,COG0270	N/A	N/A	N/A	N/A
PHROG	UHGV-0101646_28	phrog_874	138.1	5.70006e-41	N/A	unknown function
UniRef90	UHGV-0101646_28	UniRef90_UPI001560F2D1	117.0	1.48e-28	morphogenetic protein	N/A
eggNOG-mapper	UHGV-0101646_28	269482.Bcep1808_4494	119.0	3.2e-30	N/A	N/A
structural_annotation	UHGV-0101646_28	PF04266,MF_00684,NF003443,COG4405	N/A	N/A	N/A	N/A
PHROG	UHGV-0101646_29	phrog_3729	64.3	1.4e-18	replication initiation protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0101646_29	665942.HMPREF1022_02905	230.0	0	N/A	N/A
COG	UHGV-0101646_29	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
PHROG	UHGV-0101646_30	phrog_10105	55.9	7.1e-16	N/A	unknown function
KOfam	UHGV-0101646_31	K01160	56.5	8e-16	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-0101646_31	phrog_140	103.1	2.8e-30	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0101646_31	UniRef90_UPI0013E9F0F3	237.0	0	RusA family crossover junction endodeoxyribonuclease	N/A
eggNOG-mapper	UHGV-0101646_31	665942.HMPREF1022_02908	285.0	0	Endodeoxyribonuclease RusA	N/A
Pfam	UHGV-0101646_31	PF05866	N/A	N/A	Endodeoxyribonuclease RusA	RusA
COG	UHGV-0101646_31	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
structural_annotation	UHGV-0101646_31	PF05866,NF007305,COG4570	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0101646_33	1408428.JNJP01000012_gene1110	54.3	0.00000123	N/A	N/A
structural_annotation	UHGV-0101646_33	PF13613	N/A	N/A	N/A	N/A
PHROG	UHGV-0101646_34	phrog_38	352.1	0	terminase large subunit	head and packaging
UniRef90	UHGV-0101646_34	UniRef90_G1UWD8	964.0	0	Terminase_6C domain-containing protein	N/A
eggNOG-mapper	UHGV-0101646_34	665942.HMPREF1022_02911	964.0	0	Terminase RNaseH-like domain	N/A
Pfam	UHGV-0101646_34	PF17289	N/A	N/A	Terminase RNaseH-like domain	Terminase_6C
NCBIFam	UHGV-0101646_34	TIGR01630.1	N/A	N/A	phage terminase large subunit	N/A
COG	UHGV-0101646_34	COG5362	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0101646_34	PF17289,PF05876,MF_04147,NF033889,COG5410,COG5362	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0101646_35	1121447.JONL01000011_gene2307	108.0	1.45e-26	N/A	N/A
UniRef90	UHGV-0101646_36	UniRef90_UPI0013EB52F9	106.0	1.09e-28	MerR family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0101646_36	665942.HMPREF1022_02913	159.0	0	N/A	N/A
KOfam	UHGV-0101646_37	K07726	81.9	1.1e-23	K07726; putative transcriptional regulator	N/A
PHROG	UHGV-0101646_37	phrog_2104	82.1	5.3e-24	N/A	unknown function
UniRef90	UHGV-0101646_37	UniRef90_UPI0013ECF0AF	161.0	0	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0101646_37	665942.HMPREF1022_02914	128.0	1.01e-37	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-0101646_37	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0101646_37	COG2944	N/A	N/A	DNA-binding transcriptional regulator YiaG, XRE-type HTH domain	N/A
KOfam	UHGV-0101646_38	K07726	41.2	0.000000000025	K07726; putative transcriptional regulator	N/A
PHROG	UHGV-0101646_38	phrog_5869	98.6	4.3e-29	N/A	unknown function
UniRef90	UHGV-0101646_38	UniRef90_UPI001F1500A0	206.0	0	type II toxin-antitoxin system RelE/ParE family toxin	N/A
eggNOG-mapper	UHGV-0101646_38	1408428.JNJP01000017_gene1762	140.0	8.65022e-42	RelE toxin of RelE / RelB toxin-antitoxin system	N/A
Pfam	UHGV-0101646_38	PF06296	N/A	N/A	RelE toxin of RelE / RelB toxin-antitoxin system	RelE
COG	UHGV-0101646_38	COG4737	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0101646_38	PF06296,TIGR02683,COG4737	N/A	N/A	N/A	N/A
PHROG	UHGV-0101646_39	phrog_24780	75.7	5.9e-22	N/A	unknown function
UniRef90	UHGV-0101646_39	UniRef90_G1UWE2	421.0	0	Pesticin domain-containing protein	N/A
eggNOG-mapper	UHGV-0101646_39	665942.HMPREF1022_02915	421.0	0	Bacterial toxin homologue of phage lysozyme, C-term	N/A
Pfam	UHGV-0101646_39	PF16754	N/A	N/A	Bacterial toxin homologue of phage lysozyme, C-term	Pesticin
COG	UHGV-0101646_39	COG3409	N/A	N/A	Peptidoglycan-binding (PGRP) domain of peptidoglycan hydrolases	N/A
structural_annotation	UHGV-0101646_39	PF16754,MF_04136,COG3772	N/A	N/A	N/A	N/A
PHROG	UHGV-0101646_40	phrog_1544	104.7	9.2e-31	N/A	unknown function
eggNOG-mapper	UHGV-0101646_40	665942.HMPREF1022_01523	178.0	0	N/A	N/A
PHROG	UHGV-0101646_41	phrog_332	202.9	0	head-tail adaptor	connector
eggNOG-mapper	UHGV-0101646_41	665942.HMPREF1022_02918	1311.0	0	N/A	N/A
structural_annotation	UHGV-0101646_41	PF12236,MF_04120,TIGR01542,COG5518	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0101646_43	1121447.JONL01000007_gene1396	89.7	9.84e-18	N/A	N/A
PHROG	UHGV-0101646_44	phrog_1357	178.1	0	major head protein	head and packaging
UniRef90	UHGV-0101646_44	UniRef90_UPI0013EB0C0B	619.0	0	N4-gp56 family major capsid protein	N/A
eggNOG-mapper	UHGV-0101646_44	665942.HMPREF1022_02921	683.0	0	N/A	N/A
NCBIFam	UHGV-0101646_44	TIGR04387.1	N/A	N/A	N4-gp56 family major capsid protein	N/A
structural_annotation	UHGV-0101646_44	PF13252,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0101646_45	665942.HMPREF1022_02922	236.0	0	N/A	N/A
PHROG	UHGV-0101646_46	phrog_399	81.4	1.1e-23	structural protein	head and packaging
UniRef90	UHGV-0101646_46	UniRef90_A0A1K1LD89	317.0	0	Conserved phage protein	N/A
eggNOG-mapper	UHGV-0101646_46	665942.HMPREF1022_02923	468.0	0	N/A	N/A
Pfam	UHGV-0101646_46	PF20387	N/A	N/A	N/A	DUF6682
structural_annotation	UHGV-0101646_46	PF20387	N/A	N/A	N/A	N/A
PHROG	UHGV-0101646_47	phrog_437	83.0	2.3e-24	virion structural protein	head and packaging
eggNOG-mapper	UHGV-0101646_47	665942.HMPREF1022_02924	371.0	0	N/A	N/A
structural_annotation	UHGV-0101646_47	PF20387,TIGR02215	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0101646_48	665942.HMPREF1022_02925	644.0	0	N/A	N/A
COG	UHGV-0101646_48	COG5563	N/A	N/A	N/A	N/A
KOfam	UHGV-0101646_49	K06237	52.2	0.000000000000002	COL4A; collagen type IV alpha	N/A
PHROG	UHGV-0101646_49	phrog_5302	105.8	6.9e-32	tail protein	tail
eggNOG-mapper	UHGV-0101646_49	665942.HMPREF1022_02926	1094.0	0	cellulose 1,4-beta-cellobiosidase activity	N/A
Pfam	UHGV-0101646_49	PF01391	N/A	N/A	Collagen triple helix repeat (20 copies)	Collagen
COG	UHGV-0101646_49	COG5301	N/A	N/A	Phage-related tail fiber protein	N/A
PHROG	UHGV-0101646_51	phrog_2618	113.0	2.5e-33	N/A	unknown function
eggNOG-mapper	UHGV-0101646_51	665942.HMPREF1022_02928	233.0	0	N/A	N/A
PHROG	UHGV-0101646_52	phrog_3342	47.1	0.00000000000027	N/A	unknown function
UniRef90	UHGV-0101646_52	UniRef90_A0A316MPL3	86.7	4.53e-20	Pseudouridine synthase	N/A
eggNOG-mapper	UHGV-0101646_52	665942.HMPREF1022_02929	233.0	0	N/A	N/A
PHROG	UHGV-0101646_53	phrog_3206	96.7	1.6e-28	Avd protein of DGR	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0101646_53	UniRef90_UPI0018C64312	130.0	8.72e-37	diversity-generating retroelement protein Avd	N/A
eggNOG-mapper	UHGV-0101646_53	665942.HMPREF1022_02930	243.0	0	23S rRNA-intervening sequence protein	N/A
Pfam	UHGV-0101646_53	PF05635	N/A	N/A	23S rRNA-intervening sequence protein	23S_rRNA_IVP
NCBIFam	UHGV-0101646_53	NF033474.1	N/A	N/A	diversity-generating retroelement protein Avd	N/A
structural_annotation	UHGV-0101646_53	PF05635,NF033474,COG3781	N/A	N/A	N/A	N/A
KOfam	UHGV-0101646_54	K00986	201.4	0	ltrA; RNA-directed DNA polymerase [EC:2.7.7.49]	N/A
PHROG	UHGV-0101646_54	phrog_1423	326.3	0	Reverse transcriptase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0101646_54	UniRef90_G1UWF9	664.0	0	Reverse transcriptase domain-containing protein	N/A
eggNOG-mapper	UHGV-0101646_54	665942.HMPREF1022_02932	664.0	0	N/A	N/A
PADLOC	UHGV-0101646_54	icity0040	163.8	0	RT (reverse transcriptase)	CRISPR-CAS
Pfam	UHGV-0101646_54	PF00078	N/A	N/A	Reverse transcriptase (RNA-dependent DNA polymerase)	RVT_1
COG	UHGV-0101646_54	COG3344	N/A	N/A	Retron-type reverse transcriptase	N/A
structural_annotation	UHGV-0101646_54	PF00078,MF_01390,TIGR04416,COG3344	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0101646_55	1196322.A370_04915	53.5	0.00000196	N/A	N/A
PHROG	UHGV-0101646_56	phrog_511	334.6	0	internal virion protein	head and packaging
UniRef90	UHGV-0101646_56	UniRef90_A0A1K1LGT2	542.0	0	N/A	N/A
eggNOG-mapper	UHGV-0101646_56	665942.HMPREF1022_02934	1141.0	0	N/A	N/A
structural_annotation	UHGV-0101646_56	PF11134,MF_01282,TIGR04312,COG5276	N/A	N/A	N/A	N/A
UniRef90	UHGV-0101646_58	UniRef90_UPI0013D0A307	84.0	1.02e-16	GNAT family N-acetyltransferase	N/A
eggNOG-mapper	UHGV-0101646_58	665942.HMPREF1022_02936	363.0	0	N/A	N/A
structural_annotation	UHGV-0101646_58	PF11039,MF_02210,NF011709,COG1670	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0101646_59	665942.HMPREF1022_02937	385.0	0	N/A	N/A

All Viral Genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0101646	Yes	43,076	60	76	1