Viral OTU vOTU-159925

vOTU: vOTU-159925

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster Properties
vOTU ID	vOTU-159925
Number of Genomes	1
Taxonomy (ICTV)	root → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00196 → vOTU-159925
Host Lineage	Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Pasteurellaceae
Viral Lifestyle	lytic

Representative Genome
Genome ID	UHGV-0237670
Biosample ID	SAMN06909394
Length	25,929 bps
CheckV Completeness	56.81% (Medium-quality)
CDS Count	48
CDS Density	86.81%
tRNA Count	0
Viral Confidence	Confident

Representative Genome Content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 56.81)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-0237670_2	K04087	74.5	1.1e-21	hflC; modulator of FtsH protease HflC	N/A
PHROG	UHGV-0237670_2	phrog_200	163.1	0	lipoprotein	other
UniRef90	UHGV-0237670_2	UniRef90_A0A378NIQ8	394.0	0	Modulator of FtsH protease HflK	N/A
eggNOG-mapper	UHGV-0237670_2	948565.AFFP02000032_gene1575	387.0	0	prohibitin homologues	N/A
Pfam	UHGV-0237670_2	PF01145	N/A	N/A	SPFH domain / Band 7 family	Band_7
COG	UHGV-0237670_2	COG0330	N/A	N/A	Regulator of protease activity HflC, stomatin/prohibitin superfamily	N/A
structural_annotation	UHGV-0237670_2	PF01145,MF_01562,NF008181,COG0330	N/A	N/A	N/A	N/A
PHROG	UHGV-0237670_4	phrog_524	186.2	0	anti-repressor Ant	transcription regulation
UniRef90	UHGV-0237670_4	UniRef90_A0A2X4G6D6	531.0	0	Antirepressor protein	N/A
eggNOG-mapper	UHGV-0237670_4	1028806.GGE_2170	228.0	0	P22_AR N-terminal domain	N/A
Pfam	UHGV-0237670_4	PF10547	N/A	N/A	P22_AR N-terminal domain	P22_AR_N
Pfam	UHGV-0237670_4	PF10552	N/A	N/A	ORF6C domain	ORF6C
COG	UHGV-0237670_4	COG3378	N/A	N/A	DNA primase, phage- or plasmid-associated	N/A
PHROG	UHGV-0237670_6	phrog_954	210.0	0	DNA methyltransferase	other
UniRef90	UHGV-0237670_6	UniRef90_A0A369ZGM4	345.0	0	Class I SAM-dependent methyltransferase	N/A
eggNOG-mapper	UHGV-0237670_6	948565.AFFP02000036_gene1597	254.0	0	Specifically methylates the guanine in position 2445 (m2G2445) and the guanine in position 2069 (m7G2069) of 23S rRNA	N/A
PADLOC	UHGV-0237670_6	MTase_II_00074	207.4	0	Type II methyltransferase	RM
COG	UHGV-0237670_6	COG1092	N/A	N/A	23S rRNA G2069 N7-methylase RlmK or C1962 C5-methylase RlmI	N/A
structural_annotation	UHGV-0237670_6	PF01170,MF_01057,TIGR00446,COG4123	N/A	N/A	N/A	N/A
PHROG	UHGV-0237670_7	phrog_7704	49.9	0.000000000000061	N/A	unknown function
UniRef90	UHGV-0237670_7	UniRef90_U1QKK9	79.0	7.03e-18	N/A	N/A
eggNOG-mapper	UHGV-0237670_7	1005994.GTGU_00287	50.4	0.00000208	N/A	N/A
Pfam	UHGV-0237670_7	PF04448	N/A	N/A	N/A	DUF551
COG	UHGV-0237670_7	COG1196	N/A	N/A	Chromosome segregation ATPase Smc	N/A
structural_annotation	UHGV-0237670_7	NF041588	N/A	N/A	N/A	N/A
PHROG	UHGV-0237670_8	phrog_9552	101.0	1.2e-29	kinase	other
UniRef90	UHGV-0237670_8	UniRef90_UPI001CF7F092	329.0	0	pyruvate kinase	N/A
eggNOG-mapper	UHGV-0237670_8	1263831.F543_1850	87.4	1.02e-19	N/A	N/A
KOfam	UHGV-0237670_9	K03427	53.0	0.000000000000005	hsdM; type I restriction enzyme M protein [EC:2.1.1.72]	N/A
PHROG	UHGV-0237670_9	phrog_5696	221.5	0	N/A	unknown function
UniRef90	UHGV-0237670_9	UniRef90_I2NPA3	392.0	0	Site-specific DNA-methyltransferase (adenine-specific)	N/A
eggNOG-mapper	UHGV-0237670_9	1095743.HMPREF1054_1983	392.0	0	N-6 DNA Methylase	N/A
Pfam	UHGV-0237670_9	PF02384	N/A	N/A	N-6 DNA Methylase	N6_Mtase
COG	UHGV-0237670_9	COG0286	N/A	N/A	Type I restriction-modification system, DNA methylase subunit	N/A
structural_annotation	UHGV-0237670_9	COG0286	N/A	N/A	N/A	N/A
PHROG	UHGV-0237670_10	phrog_5034	64.9	1.7e-18	NinG/ Rap DNA junction specific endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0237670_10	UniRef90_I2NPA6	102.0	6.73e-24	Putative bacteriophage Lambda NinG protein	N/A
eggNOG-mapper	UHGV-0237670_10	1120980.JQKH01000028_gene1712	103.0	5.22e-25	HNH nucleases	N/A
PHROG	UHGV-0237670_12	phrog_2565	109.5	3.2e-32	N/A	unknown function
UniRef90	UHGV-0237670_12	UniRef90_A0A496NBC3	483.0	0	AP2/ERF domain-containing protein (Fragment)	N/A
eggNOG-mapper	UHGV-0237670_12	696748.ASU2_02575	114.0	1.8e-28	N/A	N/A
PHROG	UHGV-0237670_13	phrog_5715	327.0	0	exonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0237670_13	UniRef90_A0A369Z852	437.0	0	Translocation protein TolB	N/A
eggNOG-mapper	UHGV-0237670_13	205914.HS_1420	332.0	0	N/A	N/A
structural_annotation	UHGV-0237670_13	PF09588,TIGR03033,COG5377	N/A	N/A	N/A	N/A
KOfam	UHGV-0237670_14	K07455	200.0	0	recT; recombination protein RecT	N/A
PHROG	UHGV-0237670_14	phrog_148	207.5	0	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0237670_14	UniRef90_A0A377I1G0	589.0	0	Phage recombinase	N/A
eggNOG-mapper	UHGV-0237670_14	205914.HS_1419	421.0	0	RecT family	N/A
Pfam	UHGV-0237670_14	PF03837	N/A	N/A	RecT family	RecT
NCBIFam	UHGV-0237670_14	TIGR00616.1	N/A	N/A	recombinase, phage RecT family	N/A
COG	UHGV-0237670_14	COG3723	N/A	N/A	Recombinational DNA repair protein RecT	N/A
structural_annotation	UHGV-0237670_14	PF03837,TIGR00616,COG3723	N/A	N/A	N/A	N/A
PHROG	UHGV-0237670_15	phrog_13811	159.7	0	N/A	unknown function
eggNOG-mapper	UHGV-0237670_15	1095743.HMPREF1054_1990	363.0	0	N/A	N/A
PHROG	UHGV-0237670_19	phrog_25707	82.5	5.4e-24	N/A	unknown function
eggNOG-mapper	UHGV-0237670_19	1005058.UMN179_02369	63.2	0.000000000159	N/A	N/A
PHROG	UHGV-0237670_20	phrog_2812	163.7	0	N/A	unknown function
UniRef90	UHGV-0237670_20	UniRef90_UPI000E583717	345.0	0	KilA-N domain-containing protein	N/A
eggNOG-mapper	UHGV-0237670_20	758.BBIX01000009_gene1621	160.0	0	KilA-N	N/A
Pfam	UHGV-0237670_20	PF04383	N/A	N/A	KilA-N domain	KilA-N
PHROG	UHGV-0237670_23	phrog_210	253.3	0	N/A	unknown function
UniRef90	UHGV-0237670_23	UniRef90_A0A248XQQ1	382.0	0	N/A	N/A
eggNOG-mapper	UHGV-0237670_23	1316932.MHH_c16990	382.0	0	N/A	N/A
Pfam	UHGV-0237670_23	PF10065	N/A	N/A	N/A	DUF2303
COG	UHGV-0237670_23	COG5532	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0237670_23	PF10065,COG5532	N/A	N/A	N/A	N/A
PHROG	UHGV-0237670_24	phrog_204	132.1	2.1e-39	N/A	unknown function
UniRef90	UHGV-0237670_24	UniRef90_W0RDA0	190.0	0	Putative bacteriophage protein	N/A
eggNOG-mapper	UHGV-0237670_24	1263831.F543_1870	190.0	0	N/A	N/A
PHROG	UHGV-0237670_27	phrog_29830	89.5	2.1e-26	N/A	unknown function
PHROG	UHGV-0237670_28	phrog_2657	192.8	0	transcriptional regulator	transcription regulation
UniRef90	UHGV-0237670_28	UniRef90_W0QBA7	511.0	0	KilA, N-terminal/APSES-type HTH, DNA-binding protein	N/A
eggNOG-mapper	UHGV-0237670_28	1432056.X781_23800	511.0	0	KilA-N	N/A
Pfam	UHGV-0237670_28	PF04383	N/A	N/A	KilA-N domain	KilA-N
structural_annotation	UHGV-0237670_28	PF04383,NF033622,COG3943	N/A	N/A	N/A	N/A
KOfam	UHGV-0237670_29	K01356	78.6	1.1e-22	lexA; repressor LexA [EC:3.4.21.88]	N/A
PHROG	UHGV-0237670_29	phrog_4	85.0	5.1e-38	transcriptional repressor	transcription regulation
UniRef90	UHGV-0237670_29	UniRef90_UPI001CF899A5	592.0	0	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0237670_29	520999.PROVALCAL_03413	176.0	0	Peptidase S24-like	N/A
Pfam	UHGV-0237670_29	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
Pfam	UHGV-0237670_29	PF00717	N/A	N/A	Peptidase S24-like	Peptidase_S24
COG	UHGV-0237670_29	COG2932	N/A	N/A	Phage repressor protein C, contains Cro/C1-type HTH and peptisase s24 domains	N/A
structural_annotation	UHGV-0237670_29	PF00717,PF01381,MF_00015,MF_00535,TIGR00498,NF041951,COG1974	N/A	N/A	N/A	N/A
KOfam	UHGV-0237670_30	K22302	45.2	0.0000000000018	dicC; transcriptional repressor of cell division inhibition gene dicB	N/A
PHROG	UHGV-0237670_30	phrog_35	62.9	5.1e-18	transcriptional repressor	transcription regulation
UniRef90	UHGV-0237670_30	UniRef90_A0A369Z9U4	154.0	0	Cro/Cl family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0237670_30	228399.appser1_5520	104.0	1.05e-28	protein conserved in bacteria, prophage-related	N/A
Pfam	UHGV-0237670_30	PF15943	N/A	N/A	Bacterial toxin YdaS	YdaS_toxin
COG	UHGV-0237670_30	COG4197	N/A	N/A	DNA-binding transcriptional regulator YdaS, prophage-encoded, Cro superfamily	N/A
PHROG	UHGV-0237670_32	phrog_5810	134.5	7.5e-40	replication initiation protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0237670_32	UniRef90_A0A369ZBS5	352.0	0	Replication protein	N/A
eggNOG-mapper	UHGV-0237670_32	1433287.X808_8870	174.0	0	Bacteriophage replication protein O	N/A
Pfam	UHGV-0237670_32	PF04492	N/A	N/A	Bacteriophage replication protein O	Phage_rep_O
NCBIFam	UHGV-0237670_32	TIGR01610.1	N/A	N/A	phage replication protein O, N-terminal domain	N/A
structural_annotation	UHGV-0237670_32	PF04492,TIGR01610,COG3388	N/A	N/A	N/A	N/A
KOfam	UHGV-0237670_33	K02314	270.4	0	dnaB; replicative DNA helicase [EC:5.6.2.3]	N/A
PHROG	UHGV-0237670_33	phrog_19	278.6	0	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0237670_33	UniRef90_A0A369Z991	846.0	0	DNA helicase	N/A
eggNOG-mapper	UHGV-0237670_33	1316932.MHH_c17760	532.0	0	DNA helicase	N/A
Pfam	UHGV-0237670_33	PF00772	N/A	N/A	DnaB-like helicase N terminal domain	DnaB
Pfam	UHGV-0237670_33	PF03796	N/A	N/A	DnaB-like helicase C terminal domain	DnaB_C
COG	UHGV-0237670_33	COG0305	N/A	N/A	Replicative DNA helicase	N/A
structural_annotation	UHGV-0237670_33	PF03796,PF00772,MF_04155,TIGR00665,COG0305	N/A	N/A	N/A	N/A
PHROG	UHGV-0237670_35	phrog_319	168.7	0	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0237670_35	UniRef90_I3DMI5	306.0	0	PF07105 domain protein	N/A
eggNOG-mapper	UHGV-0237670_35	1095743.HMPREF1054_2010	268.0	0	N/A	N/A
Pfam	UHGV-0237670_35	PF07105	N/A	N/A	N/A	DUF1367
structural_annotation	UHGV-0237670_35	PF07105	N/A	N/A	N/A	N/A
PHROG	UHGV-0237670_37	phrog_36973	96.0	1.3e-28	N/A	unknown function
PHROG	UHGV-0237670_38	phrog_131	128.6	4.5e-38	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0237670_38	UniRef90_A0A369Z9S6	177.0	0	N/A	N/A
eggNOG-mapper	UHGV-0237670_38	1095743.HMPREF1054_2014	167.0	0	N/A	N/A
Pfam	UHGV-0237670_38	PF07102	N/A	N/A	Putative nuclease YbcO	YbcO
structural_annotation	UHGV-0237670_38	PF07102	N/A	N/A	N/A	N/A
KOfam	UHGV-0237670_39	K01160	108.1	1.2e-31	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-0237670_39	phrog_34	117.3	9.5e-35	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0237670_39	UniRef90_A0A377I264	243.0	0	Crossover junction endodeoxyribonuclease rusA	N/A
eggNOG-mapper	UHGV-0237670_39	228399.appser1_5590	110.0	1.55e-29	Endonuclease that resolves Holliday junction intermediates made during homologous genetic recombination and DNA repair. Exhibits sequence and structure-selective cleavage of four-way DNA junctions, where it introduces symmetrical nicks in two strands of the same polarity at the 5' side of dinucleotides. Corrects the defects in genetic recombination and DNA repair associated with inactivation of ruvAB or ruvC	N/A
Pfam	UHGV-0237670_39	PF05866	N/A	N/A	Endodeoxyribonuclease RusA	RusA
COG	UHGV-0237670_39	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
structural_annotation	UHGV-0237670_39	PF05866,NF007305,COG4570	N/A	N/A	N/A	N/A
PHROG	UHGV-0237670_40	phrog_79	90.1	2.2e-26	anti-termination protein Q-like	transcription regulation
UniRef90	UHGV-0237670_40	UniRef90_A0A377I1U0	166.0	0	Putative phage anti-termination protein Q	N/A
eggNOG-mapper	UHGV-0237670_40	1095743.HMPREF1054_2017	149.0	1.4013e-45	N/A	N/A
Pfam	UHGV-0237670_40	PF06530	N/A	N/A	Phage antitermination protein Q	Phage_antitermQ
PHROG	UHGV-0237670_42	phrog_126	87.7	8.4e-26	holin/anti-holin	lysis
UniRef90	UHGV-0237670_42	UniRef90_I2NQD8	217.0	0	Phage holin, lambda family (Fragment)	N/A
eggNOG-mapper	UHGV-0237670_42	1095743.HMPREF1054_2061	217.0	0	Phage holin family (Lysis protein S)	N/A
Pfam	UHGV-0237670_42	PF05106	N/A	N/A	Phage holin family (Lysis protein S)	Phage_holin_3_1
NCBIFam	UHGV-0237670_42	TIGR01594.1	N/A	N/A	phage holin, lambda family	N/A
KOfam	UHGV-0237670_43	K01185	151.7	7.00649e-45	E3.2.1.17; lysozyme [EC:3.2.1.17]	N/A
PHROG	UHGV-0237670_43	phrog_7	189.8	0	endolysin	lysis
UniRef90	UHGV-0237670_43	UniRef90_I2NQD9	287.0	0	Lysozyme	N/A
eggNOG-mapper	UHGV-0237670_43	1095743.HMPREF1054_2062	287.0	0	Phage lysozyme	N/A
Pfam	UHGV-0237670_43	PF00959	N/A	N/A	Phage lysozyme	Phage_lysozyme
COG	UHGV-0237670_43	COG3772	N/A	N/A	Phage-related lysozyme (muramidase), GH24 family	N/A
HAMAP	UHGV-0237670_43	MF_04110	N/A	N/A	Endolysin	N/A
structural_annotation	UHGV-0237670_43	PF00959,MF_04110,COG3772	N/A	N/A	N/A	N/A
PHROG	UHGV-0237670_44	phrog_214	54.8	0.0000000000000015	Rz-like spanin	lysis
UniRef90	UHGV-0237670_44	UniRef90_UPI001CF8ECA5	179.0	0	N/A	N/A
eggNOG-mapper	UHGV-0237670_44	1095743.HMPREF1054_2063	119.0	1.35e-33	N/A	N/A
Pfam	UHGV-0237670_44	PF10828	N/A	N/A	N/A	DUF2570
COG	UHGV-0237670_44	COG2959	N/A	N/A	Proteobacterial HemX domain, involved in 2-ketogluconate production (unrelated to B. subtilis HemX, COG0755, no evidence of involvement in heme biosynthesis)	N/A
PHROG	UHGV-0237670_45	phrog_141	173.1	0	terminase small subunit	head and packaging
UniRef90	UHGV-0237670_45	UniRef90_I2NPS9	273.0	0	PF07278 family protein	N/A
eggNOG-mapper	UHGV-0237670_45	1095743.HMPREF1054_1773	273.0	0	N/A	N/A
Pfam	UHGV-0237670_45	PF07278	N/A	N/A	N/A	DUF1441
structural_annotation	UHGV-0237670_45	PF07278,COG4220	N/A	N/A	N/A	N/A
KOfam	UHGV-0237670_46	K21512	204.3	0	gpA; terminase, large subunit [EC:3.1.21.4]	N/A
PHROG	UHGV-0237670_46	phrog_15	638.9	0	terminase large subunit	head and packaging
UniRef90	UHGV-0237670_46	UniRef90_I2NPT3	1427.0	0	Phage terminase large subunit GpA	N/A
eggNOG-mapper	UHGV-0237670_46	1095743.HMPREF1054_1772	1427.0	0	Bacteriophage tail assembly protein	N/A
Pfam	UHGV-0237670_46	PF05876	N/A	N/A	Phage terminase large subunit gpA, ATPase domain	GpA_ATPase
Pfam	UHGV-0237670_46	PF20454	N/A	N/A	Terminase large subunit gpA, endonuclease domain	GpA_nuclease
COG	UHGV-0237670_46	COG5525	N/A	N/A	Phage terminase, large subunit GpA	N/A
HAMAP	UHGV-0237670_46	MF_04144	N/A	N/A	Terminase, large subunit	N/A
structural_annotation	UHGV-0237670_46	PF20454,PF05876,MF_04144,TIGR01547,COG5525	N/A	N/A	N/A	N/A
PHROG	UHGV-0237670_47	phrog_9104	160.4	0	N/A	unknown function
eggNOG-mapper	UHGV-0237670_47	1028806.GGE_0505	135.0	6.09999e-41	N/A	N/A
eggNOG-mapper	UHGV-0237670_48	1028806.GGE_0504	63.9	0.0000000000095	Bacteriophage capsid protein	N/A
COG	UHGV-0237670_48	COG5511	N/A	N/A	Phage capsid protein	N/A

All Viral Genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0237670	Yes	25,929	42	57	1