Viral OTU vOTU-165411

vOTU: vOTU-165411

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster Properties
vOTU ID	vOTU-165411
Number of Genomes	1
Taxonomy (ICTV)	root → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00004 → vSUBFAM-00020 → vGENUS-00176 → vOTU-165411
Host Lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → CAG-170
Viral Lifestyle	temperate

Representative Genome
Genome ID	UHGV-0118016
Biosample ID	SAMEA103958112
Length	29,555 bps
CheckV Completeness	71.79% (Medium-quality)
CDS Count	57
CDS Density	94.85%
tRNA Count	1
Viral Confidence	Confident

Representative Genome Content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 71.79)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-0118016_1	K14059	157.6	0	int; integrase	N/A
PHROG	UHGV-0118016_1	phrog_1	151.0	9.80909e-45	integrase	integration and excision
UniRef90	UHGV-0118016_1	UniRef90_A0A3D3Y5E0	610.0	0	Integrase	N/A
eggNOG-mapper	UHGV-0118016_1	445972.ANACOL_01797	306.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0118016_1	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0118016_1	COG4974	N/A	N/A	Site-specific recombinase XerD	N/A
structural_annotation	UHGV-0118016_1	PF00589,MF_01807,TIGR02224,COG4973	N/A	N/A	N/A	N/A
Pfam	UHGV-0118016_2	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0118016_2	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-0118016_2	PF12844	N/A	N/A	N/A	N/A
PHROG	UHGV-0118016_7	phrog_8	51.3	0.000000000000024	transcriptional regulator	transcription regulation
UniRef90	UHGV-0118016_7	UniRef90_A0A2X0Q518	60.8	0.00000000209	HTH cro/C1-type domain-containing protein	N/A
eggNOG-mapper	UHGV-0118016_7	1229517.AMFD01000025_gene921	52.4	0.000000638	Lactococcus bacteriophage repressor	N/A
COG	UHGV-0118016_7	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0118016_7	PF01381,NF007257,COG1396	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0118016_8	476272.RUMHYD_01731	80.5	3.13e-16	N/A	N/A
structural_annotation	UHGV-0118016_8	PF13429,TIGR02552,COG0457	N/A	N/A	N/A	N/A
UniRef90	UHGV-0118016_9	UniRef90_A0A1C7FQD9	84.0	8.06e-20	Transcriptional regulator	N/A
Pfam	UHGV-0118016_9	PF13560	N/A	N/A	Helix-turn-helix domain	HTH_31
structural_annotation	UHGV-0118016_9	PF13560,NF041951,COG1396	N/A	N/A	N/A	N/A
PHROG	UHGV-0118016_13	phrog_4973	69.0	6.7e-20	N/A	unknown function
UniRef90	UHGV-0118016_13	UniRef90_A0A3D3Y0P8	84.3	5.83e-20	DNA-binding protein	N/A
eggNOG-mapper	UHGV-0118016_13	1072685.IX83_07155	61.2	0.00000000000938	Helix-turn-helix domain	N/A
Pfam	UHGV-0118016_13	PF14090	N/A	N/A	Helix-turn-helix domain	HTH_39
structural_annotation	UHGV-0118016_13	PF14090,NF040939,COG4738	N/A	N/A	N/A	N/A
PHROG	UHGV-0118016_15	phrog_659	42.5	0.0000000000075	Sak-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0118016_15	UniRef90_A0A6N9QJT6	199.0	0	N/A	N/A
eggNOG-mapper	UHGV-0118016_15	33035.JPJF01000135_gene5082	134.0	1.92e-36	N/A	N/A
Pfam	UHGV-0118016_15	PF06378	N/A	N/A	N/A	DUF1071
structural_annotation	UHGV-0118016_15	PF06378,TIGR00607,COG5055	N/A	N/A	N/A	N/A
UniRef90	UHGV-0118016_16	UniRef90_B0PAM4	139.0	1.56e-38	YqaJ domain-containing protein	N/A
structural_annotation	UHGV-0118016_16	PF09588,MF_03030,TIGR03033,COG5377	N/A	N/A	N/A	N/A
PHROG	UHGV-0118016_17	phrog_72	66.1	4.9e-19	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0118016_17	UniRef90_A0A8D9PDS2	151.0	2.60642e-43	NinB protein	N/A
eggNOG-mapper	UHGV-0118016_17	445972.ANACOL_01825	158.0	0	N/A	N/A
structural_annotation	UHGV-0118016_17	PF05772,NF007281	N/A	N/A	N/A	N/A
PHROG	UHGV-0118016_18	phrog_7370	60.9	2e-17	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0118016_18	UniRef90_A0A3D1LDS4	141.0	8.46945e-42	HNH domain-containing protein	N/A
eggNOG-mapper	UHGV-0118016_18	1235800.C819_02254	58.9	0.000000001	HNH nucleases	N/A
Pfam	UHGV-0118016_18	PF01844	N/A	N/A	HNH endonuclease	HNH
KOfam	UHGV-0118016_20	K03111	124.6	1.4e-36	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0118016_20	phrog_44	128.4	5.7e-38	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0118016_20	UniRef90_UPI001C02B0E9	177.0	0	single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0118016_20	693746.OBV_12860	166.0	0	Single-strand binding protein family	N/A
Pfam	UHGV-0118016_20	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0118016_20	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0118016_20	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0118016_20	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0118016_20	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-0118016_21	phrog_15768	49.9	0.000000000000061	N/A	unknown function
UniRef90	UHGV-0118016_21	UniRef90_A0A7C1PUJ6	103.0	9.73e-24	N/A	N/A
COG	UHGV-0118016_21	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-0118016_21	PF07120,COG3756	N/A	N/A	N/A	N/A
KOfam	UHGV-0118016_23	K00571	115.5	6.2e-34	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	N/A
PHROG	UHGV-0118016_23	phrog_67	99.8	4.1e-30	DNA methyltransferase	other
UniRef90	UHGV-0118016_23	UniRef90_A0A1C6E5W1	421.0	0	Methyltransferase	N/A
eggNOG-mapper	UHGV-0118016_23	910314.HMPREF9220_0636	379.0	0	Belongs to the N(4) N(6)-methyltransferase family	N/A
PADLOC	UHGV-0118016_23	MTase_II_00157	95.0	1.3e-28	Type II methyltransferase	RM
Pfam	UHGV-0118016_23	PF01555	N/A	N/A	DNA methylase	N6_N4_Mtase
COG	UHGV-0118016_23	COG0863	N/A	N/A	DNA modification methylase	N/A
structural_annotation	UHGV-0118016_23	PF01555,MF_01872,NF010253,COG0863	N/A	N/A	N/A	N/A
UniRef90	UHGV-0118016_25	UniRef90_UPI001C10265C	97.8	5.09e-24	N/A	N/A
Pfam	UHGV-0118016_25	PF04448	N/A	N/A	N/A	DUF551
structural_annotation	UHGV-0118016_25	NF041588	N/A	N/A	N/A	N/A
PHROG	UHGV-0118016_26	phrog_5781	68.0	1.6e-19	N/A	unknown function
UniRef90	UHGV-0118016_26	UniRef90_R5AT00	122.0	4.81e-34	Gp57	N/A
eggNOG-mapper	UHGV-0118016_26	1397284.AYMN01000083_gene2419	74.3	3.41e-16	N/A	N/A
Pfam	UHGV-0118016_26	PF14359	N/A	N/A	N/A	DUF4406
COG	UHGV-0118016_26	COG3613	N/A	N/A	Nucleoside 2-deoxyribosyltransferase	N/A
structural_annotation	UHGV-0118016_26	PF14359,MF_03036,COG3613	N/A	N/A	N/A	N/A
PHROG	UHGV-0118016_27	phrog_38832	45.6	0.000000000000083	N/A	unknown function
structural_annotation	UHGV-0118016_27	PF11717,TIGR02450	N/A	N/A	N/A	N/A
PHROG	UHGV-0118016_30	phrog_599	43.8	0.0000000000048	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0118016_30	UniRef90_R6QWY1	106.0	4.26e-28	28	N/A
dbAPIS	UHGV-0118016_30	APIS033	N/A	N/A	Lar is functionally similar to RaI, is able to alleviate restriction and enhance modification by EcoKI. And the nucleotide sequences of their genes share 47% identity, indicating a common origin.	N/A
UniRef90	UHGV-0118016_32	UniRef90_A0A8D9PDT5	53.5	0.000000782	Hydrogenase/urease nickel incorporation protein	N/A
UniRef90	UHGV-0118016_35	UniRef90_A0A1C6DFA0	196.0	0	FAD-dependent thymidylate synthase	N/A
eggNOG-mapper	UHGV-0118016_35	397290.C810_01371	103.0	2.68e-25	N/A	N/A
Pfam	UHGV-0118016_35	PF02511	N/A	N/A	Thymidylate synthase complementing protein	Thy1
structural_annotation	UHGV-0118016_35	PF02511,MF_01408,TIGR02170,COG1351	N/A	N/A	N/A	N/A
PHROG	UHGV-0118016_36	phrog_1770	56.0	8.2e-16	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0118016_36	536233.CLO_1822	149.0	1.34525e-43	N/A	N/A
structural_annotation	UHGV-0118016_36	PF02075,MF_00034,NF000711,COG0817	N/A	N/A	N/A	N/A
KOfam	UHGV-0118016_38	K01520	149.6	2.24208e-44	dut, DUT; dUTP pyrophosphatase [EC:3.6.1.23]	N/A
PHROG	UHGV-0118016_38	phrog_135	145.0	2.49431e-43	dUTPase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0118016_38	UniRef90_A0A2I7RJP7	129.0	4.22e-33	HNHc domain-containing protein	N/A
eggNOG-mapper	UHGV-0118016_38	626523.GCWU000342_01108	160.0	0	This enzyme is involved in nucleotide metabolism it produces dUMP, the immediate precursor of thymidine nucleotides and it decreases the intracellular concentration of dUTP so that uracil cannot be incorporated into DNA	N/A
Pfam	UHGV-0118016_38	PF13392	N/A	N/A	HNH endonuclease	HNH_3
Pfam	UHGV-0118016_38	PF00692	N/A	N/A	dUTPase	dUTPase
NCBIFam	UHGV-0118016_38	NF001862.0	N/A	N/A	dUTP diphosphatase	N/A
COG	UHGV-0118016_38	COG0756	N/A	N/A	dUTP pyrophosphatase (dUTPase)	N/A
eggNOG-mapper	UHGV-0118016_39	742738.HMPREF9460_02503	94.7	5.63e-24	N/A	N/A
structural_annotation	UHGV-0118016_39	PF06530,MF_00674,TIGR01636,COG1342	N/A	N/A	N/A	N/A
KOfam	UHGV-0118016_40	K03497	55.3	0.0000000000000019	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	N/A
PHROG	UHGV-0118016_40	phrog_498	165.7	0	DNA methyltransferase	other
UniRef90	UHGV-0118016_40	UniRef90_A0A810PZK9	313.0	0	ParB domain-containing protein	N/A
eggNOG-mapper	UHGV-0118016_40	1423758.BN55_01455	169.0	0	DNA methylase	N/A
PADLOC	UHGV-0118016_40	MTase_II_00015	116.5	3.6e-34	Type II methyltransferase	RM
Pfam	UHGV-0118016_40	PF02195	N/A	N/A	ParB/Sulfiredoxin domain	ParBc
COG	UHGV-0118016_40	COG0863	N/A	N/A	DNA modification methylase	N/A
structural_annotation	UHGV-0118016_40	PF02195,MF_02015,TIGR00180,COG5119	N/A	N/A	N/A	N/A
KOfam	UHGV-0118016_41	K07319	114.0	1.5e-33	yhdJ; adenine-specific DNA-methyltransferase [EC:2.1.1.72]	N/A
PHROG	UHGV-0118016_41	phrog_498	258.0	0	DNA methyltransferase	other
UniRef90	UHGV-0118016_41	UniRef90_A0A810Q3Z7	436.0	0	N6_N4_Mtase domain-containing protein	N/A
eggNOG-mapper	UHGV-0118016_41	742823.HMPREF9465_00225	283.0	0	PFAM DNA methylase N-4 N-6	N/A
PADLOC	UHGV-0118016_41	MTase_II_00015	129.0	0	Type II methyltransferase	RM
Pfam	UHGV-0118016_41	PF01555	N/A	N/A	DNA methylase	N6_N4_Mtase
COG	UHGV-0118016_41	COG0863	N/A	N/A	DNA modification methylase	N/A
structural_annotation	UHGV-0118016_41	PF01555,MF_01872,NF010253,COG0863	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0118016_42	PF07141,NF012144	N/A	N/A	N/A	N/A
KOfam	UHGV-0118016_43	K06909	142.9	3.00018e-42	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0118016_43	phrog_10250	156.1	0	N/A	unknown function
UniRef90	UHGV-0118016_43	UniRef90_A0A8J6MB41	504.0	0	PBSX family phage terminase large subunit	N/A
eggNOG-mapper	UHGV-0118016_43	1226322.HMPREF1545_00043	439.0	0	Phage terminase large subunit	N/A
Pfam	UHGV-0118016_43	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
Pfam	UHGV-0118016_43	PF17289	N/A	N/A	Terminase RNaseH-like domain	Terminase_6C
NCBIFam	UHGV-0118016_43	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-0118016_43	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0118016_43	PF04466,PF17289,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0118016_44	phrog_64	156.8	0	portal protein	head and packaging
UniRef90	UHGV-0118016_44	UniRef90_UPI001AA0B7FF	498.0	0	phage portal protein	N/A
eggNOG-mapper	UHGV-0118016_44	673376.F2VHW1_9CAUD	221.0	0	Phage portal protein, SPP1 Gp6-like	N/A
Pfam	UHGV-0118016_44	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-0118016_44	PF05133,MF_04120,TIGR01538,COG3567	N/A	N/A	N/A	N/A
PHROG	UHGV-0118016_45	phrog_595	124.7	1e-36	head maturation protease	head and packaging
UniRef90	UHGV-0118016_45	UniRef90_A0A3D3Y165	451.0	0	Phage_Mu_F domain-containing protein	N/A
eggNOG-mapper	UHGV-0118016_45	1504822.CCNO01000013_gene286	219.0	0	cell adhesion	N/A
Pfam	UHGV-0118016_45	PF04233	N/A	N/A	Phage Mu protein F like protein	Phage_Mu_F
NCBIFam	UHGV-0118016_45	TIGR01641.1	N/A	N/A	minor capsid protein	N/A
COG	UHGV-0118016_45	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0118016_45	PF04233,TIGR01641,COG2369	N/A	N/A	N/A	N/A
PHROG	UHGV-0118016_46	phrog_5	81.8	1.2e-23	tail completion or Neck1 protein	connector
UniRef90	UHGV-0118016_46	UniRef90_UPI001411BC8C	190.0	0	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-0118016_46	1123309.AQYB01000018_gene814	99.4	5.92e-25	Bacteriophage HK97-gp10, putative tail-component	N/A
Pfam	UHGV-0118016_46	PF04883	N/A	N/A	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
NCBIFam	UHGV-0118016_46	TIGR01725.1	N/A	N/A	HK97-gp10 family putative phage morphogenesis protein	N/A
structural_annotation	UHGV-0118016_46	PF20039,TIGR01725,COG5005	N/A	N/A	N/A	N/A
PHROG	UHGV-0118016_47	phrog_194	45.7	0.0000000000012	head scaffolding protein	head and packaging
UniRef90	UHGV-0118016_47	UniRef90_A0A6B9SU02	151.0	6.99248e-43	Fibronectin autolysin	N/A
eggNOG-mapper	UHGV-0118016_47	476272.RUMHYD_01775	59.7	0.0000000251	COG NOG36366 non supervised orthologous group	N/A
structural_annotation	UHGV-0118016_47	PF06810	N/A	N/A	N/A	N/A
PHROG	UHGV-0118016_48	phrog_544	132.2	2.4e-39	major head protein	head and packaging
UniRef90	UHGV-0118016_48	UniRef90_A0A1C6B5R0	597.0	0	S-l_SbsC_C domain-containing protein	N/A
eggNOG-mapper	UHGV-0118016_48	1232453.BAIF02000011_gene3359	367.0	0	N/A	N/A
Pfam	UHGV-0118016_48	PF18316	N/A	N/A	S-layer protein SbsC C-terminal domain	S-l_SbsC_C
structural_annotation	UHGV-0118016_48	PF03864,PF18316,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0118016_50	phrog_17977	75.4	5.7e-22	N/A	unknown function
UniRef90	UHGV-0118016_50	UniRef90_UPI00141211AB	107.0	7.65e-28	head-tail adaptor protein	N/A
structural_annotation	UHGV-0118016_50	PF07405,TIGR01563,COG5614	N/A	N/A	N/A	N/A
UniRef90	UHGV-0118016_51	UniRef90_A0A415JI88	121.0	2.83e-33	N/A	N/A
structural_annotation	UHGV-0118016_51	PF11367	N/A	N/A	N/A	N/A
PHROG	UHGV-0118016_52	phrog_885	73.5	2.5e-21	major tail protein	tail
UniRef90	UHGV-0118016_52	UniRef90_A0A843J9F0	204.0	0	Ig-like domain-containing protein	N/A
eggNOG-mapper	UHGV-0118016_52	1504822.CCNO01000012_gene492	244.0	0	N/A	N/A
structural_annotation	UHGV-0118016_52	PF06488,TIGR01603,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-0118016_53	phrog_18646	59.0	9.1e-17	N/A	unknown function
PHROG	UHGV-0118016_55	phrog_6900	273.9	0	tail length tape measure protein	tail
eggNOG-mapper	UHGV-0118016_55	1123312.KB904569_gene357	325.0	0	Phage tail tape measure protein TP901	N/A
COG	UHGV-0118016_55	COG5412	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-0118016_55	MF_04138,COG5281	N/A	N/A	N/A	N/A

All Viral Genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0118016	Yes	29,555	51	72	1