Basic Information | |
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Taxon OID | 3300015206 Open in IMG/M |
Scaffold ID | Ga0167644_1000131 Open in IMG/M |
Source Dataset Name | Arctic soil microbial communities from a glacier forefield, Russell Glacier, Kangerlussuaq, Greenland (Sample G8B, Adjacent to main proglacial river, end of transect (Watson river)) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | University of Bristol |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 81912 |
Total Scaffold Genes | 83 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 55 (66.27%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (100.00%) |
Associated Families | 4 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Soil → Unclassified → Unclassified → Glacier Forefield Soil → Metagenomes Of Arctic Soils |
Source Dataset Sampling Location | ||||||||
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Location Name | Russell glacier, Kangerlussuaq, Greenland | |||||||
Coordinates | Lat. (o) | 67.057002 | Long. (o) | -50.459694 | Alt. (m) | Depth (m) | 0 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F000887 | Metagenome / Metatranscriptome | 848 | Y |
F005999 | Metagenome / Metatranscriptome | 384 | Y |
F013326 | Metagenome / Metatranscriptome | 272 | Y |
F021578 | Metagenome / Metatranscriptome | 218 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0167644_100013128 | F021578 | AGG | MAGRGDRRRLEATEIGMIKKLRLMVGAGLCFALCGCVIGSGPCLWLQARRDFSGHLHFREFPRADGVDTVPILILDKTQYIYAPPQSFHCLPANDVQLVGVSEFPERLGENSHVIVDGKVLEGVAQGQYTRFVIQVVGILPIQPAP* |
Ga0167644_100013138 | F000887 | GGAGG | MRRLFNLLIPISIIAMSGCVVAPYGYYHRGYYGPRVAVVAPAPVVVVRPYR* |
Ga0167644_100013141 | F005999 | AGGA | MMRLLRPPHSGIFWRSFRLHSTHYARETIAKICSQWVVLATAIISQTGS* |
Ga0167644_100013171 | F013326 | GAGG | MVDRDANARSLIHTKLVQSRGELRSILDPPPGEHGGHASAPGNGHGGFPRSRTMQMLLSSRGLGTLGALAGGLLFARPALALRLLRFVPANAVAKMLMAKVVGALKSKSGES* |
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