Basic Information | |
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Taxon OID | 3300020021 Open in IMG/M |
Scaffold ID | Ga0193726_1000157 Open in IMG/M |
Source Dataset Name | Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H2c1 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 94515 |
Total Scaffold Genes | 100 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 70 (70.00%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → Proteobacteria | (Source: IMG/M) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil And Sediment Microbial Communities From The East River, Co, Usa |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: East River, Colorado | |||||||
Coordinates | Lat. (o) | 38.9871 | Long. (o) | -107.0011 | Alt. (m) | Depth (m) | 0 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F000887 | Metagenome / Metatranscriptome | 848 | Y |
F013326 | Metagenome / Metatranscriptome | 272 | Y |
F021578 | Metagenome / Metatranscriptome | 218 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0193726_100015730 | F013326 | GAG | MADHDAAAREMLYQRLAQSRQELRVLLDPPPTEGNGIGDAGMNGHLGFPRSRTMQMLMSSRGLGTLGALAGGLLLARPALALRLLRFVPANAVAKMLLAKAVSALKSRPAD |
Ga0193726_100015764 | F000887 | AGGAG | MRKLFMLLIPISIIAMSGCVVAPYGYHRGYYGPRVAVIAPAPVVVVRPYR |
Ga0193726_100015775 | F021578 | GGAG | MMSKLRLIVGVGLYVVLSGCVIGSGPCLWLQVRHDFTGHMHFREFPRSDGVDTVPILILDKTQYMYAPPQSFQCLAANDLQLVGITELPDRIDEGSHVIVDGKVLEGVAYDQHTRFVIQVVSVLPYRPKH |
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