NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0311340_10179598

Scaffold Ga0311340_10179598


Overview

Basic Information
Taxon OID3300029943 Open in IMG/M
Scaffold IDGa0311340_10179598 Open in IMG/M
Source Dataset NameI_Palsa_N3 coassembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2165
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → Steroidobacter → Steroidobacter denitrificans(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa → Peat Permafrost Microbial Communities From Stordalen Mire Near Abisko, Sweden

Source Dataset Sampling Location
Location NameSweden: Abisko, Stordalen Mire
CoordinatesLat. (o)68.3535Long. (o)19.0473Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003704Metagenome / Metatranscriptome473Y

Sequences

Protein IDFamilyRBSSequence
Ga0311340_101795982F003704AGGAMNARTVPADQAKAVAAAPRFDAKFIEEHKLIERYLENKLPRRGAVDLENWCRAHPEYLDELKLSERAHASLKLLEASGRPLDLREPQQPWWKSPYLLIGLAAAAVVSLAATWLLVGKYTLLRGELEDARLRAKQGPLVQPAVRTEQRISPDHAPGVNAARIVVSTAAPQLIDLYLDMTYTQKLNLFRITVDKQDQGRALILNNLLKDSNNDLRMTFNTTGLSAGIYTVRIEALPPRGDPIPDGWLLLEVR
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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