NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0311301_10015539

Scaffold Ga0311301_10015539


Overview

Basic Information
Taxon OID3300032160 Open in IMG/M
Scaffold IDGa0311301_10015539 Open in IMG/M
Source Dataset NameSb_50d combined assembly (MetaSPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)22681
Total Scaffold Genes22 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)16 (72.73%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil → Peatlands Soil Microbial Communities From Germany And Austria, That Are Sulfate Reducing

Source Dataset Sampling Location
Location NameGermany: Weissenstadt
CoordinatesLat. (o)50.1318Long. (o)11.881Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000887Metagenome / Metatranscriptome848Y
F003704Metagenome / Metatranscriptome473Y
F015122Metagenome / Metatranscriptome257Y

Sequences

Protein IDFamilyRBSSequence
Ga0311301_1001553912F003704AGGAMNARTAATGNLKPSTLPRFDAKFIEEHHLIERYLENKLPLKGARDLENWCREHPEYLNNLKLAERAQASLKLLEASGQSQDLREAPPPWWKSPYLLVSLGVVALLSLLAFWVLMGKYALLRGELEDTRVRMNQGSLVQPAAHSQLNVSPDRAPDLGRARIQVSRSAPQLIDLHIDMSYTTLMQFRVTVDKQDQGRALVLENLTKDSNSELRLTFNTTGLAVGIYSVRIEALPPKPQVVVSTRRRAQPPAEEPISVPIPVGWLILEVN
Ga0311301_1001553916F000887AGGAGMKRLLMLLIPISFLAISGCVVTPYGYRGYYGPRVAVVAPAPVVVVRP
Ga0311301_100155398F015122GAGMSMSRWFLLGTCFMFAGCVHGYGGCLFVQPVKHTLSGRVHFRSYPAPDGIDNVPILVLDHTAYVYSPAQSFLCQPADELQLTGISEFPQNIVDNSHVSVQGTLFAAVSSRQHTRFVMDVITLLPDNSTR
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