Metagenome / Metatranscriptome Family F041060

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F041060
Family Type	Metagenome / Metatranscriptome
Number of Sequences	160
Average Sequence Length	37 residues
Representative Sequence	MRPKTPLAVENSVGKLAAPPRRGAKCQHGKESMANSHP
Number of Associated Samples	125
Number of Associated Scaffolds	160

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	88.08 %
% of genes near scaffold ends (potentially truncated)	94.38 %
% of genes from short scaffolds (< 2000 bps)	94.38 %
Associated GOLD sequencing projects	124
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.14

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (98.125 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Peatland (16.875 % of family members)
Environment Ontology (ENVO)	Unclassified (31.875 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (41.875 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Fibrous	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 0.00% β-sheet: 0.00% Coil/Unstructured: 100.00%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.14
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.14
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 160 Family Scaffolds
PF08450	SGL	0.62

COG ID	Name	Functional Category	% Frequency in 160 Family Scaffolds
COG3386	Sugar lactone lactonase YvrE	Carbohydrate transport and metabolism [G]	0.62
COG3391	DNA-binding beta-propeller fold protein YncE	General function prediction only [R]	0.62

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	98.12 %
All Organisms	root	All Organisms	1.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	98.12 %
cellular organisms	root	All Organisms → cellular organisms	1.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	98.12 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	1.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	98.12 %
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	1.25 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.62 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	98.12 %
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1.25 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.62 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	98.12 %
unclassified Verrucomicrobia	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia	1.25 %
unclassified Gammaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria	0.62 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	98.12 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1.25 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	0.62 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300002864\|Ga0006764J43180_100299	Not Available	808	Open in IMG/M
3300002868\|Ga0006767J43181_100364	Not Available	814	Open in IMG/M
3300003569\|Ga0007420J51693_1000565	Not Available	806	Open in IMG/M
3300004801\|Ga0058860_10083157	Not Available	823	Open in IMG/M
3300006854\|Ga0075425_101010081	Not Available	949	Open in IMG/M
3300006860\|Ga0063829_1014899	Not Available	832	Open in IMG/M
3300006860\|Ga0063829_1479882	Not Available	698	Open in IMG/M
3300006937\|Ga0081243_1409126	Not Available	786	Open in IMG/M
3300006938\|Ga0081245_1485459	Not Available	679	Open in IMG/M
3300007219\|Ga0075025_1027113	Not Available	662	Open in IMG/M
3300007219\|Ga0075025_1337318	Not Available	781	Open in IMG/M
3300009235\|Ga0103857_10055031	Not Available	761	Open in IMG/M
3300009580\|Ga0115596_1005539	Not Available	763	Open in IMG/M
3300009581\|Ga0115600_1186278	Not Available	701	Open in IMG/M
3300009582\|Ga0115601_1053098	Not Available	791	Open in IMG/M
3300009583\|Ga0115598_1047019	Not Available	706	Open in IMG/M
3300009755\|Ga0115592_1042843	Not Available	800	Open in IMG/M
3300010087\|Ga0127492_1094981	Not Available	548	Open in IMG/M
3300010096\|Ga0127473_1100603	Not Available	610	Open in IMG/M
3300010110\|Ga0126316_1057064	Not Available	543	Open in IMG/M
3300010131\|Ga0115594_1150403	Not Available	565	Open in IMG/M
3300010137\|Ga0126323_1196884	Not Available	796	Open in IMG/M
3300010139\|Ga0127464_1000540	Not Available	787	Open in IMG/M
3300010139\|Ga0127464_1034418	Not Available	796	Open in IMG/M
3300010146\|Ga0126320_1054164	Not Available	819	Open in IMG/M
3300010147\|Ga0126319_1040003	Not Available	818	Open in IMG/M
3300010861\|Ga0126349_1223398	Not Available	611	Open in IMG/M
3300011027\|Ga0138580_117925	Not Available	577	Open in IMG/M
3300011046\|Ga0138600_114986	Not Available	652	Open in IMG/M
3300011054\|Ga0138523_1074925	Not Available	781	Open in IMG/M
3300011069\|Ga0138592_1063452	Not Available	809	Open in IMG/M
3300011073\|Ga0138584_1078379	Not Available	750	Open in IMG/M
3300011086\|Ga0138564_1059373	Not Available	500	Open in IMG/M
3300011282\|Ga0138293_135208	Not Available	835	Open in IMG/M
3300011340\|Ga0151652_13039712	Not Available	825	Open in IMG/M
3300012212\|Ga0150985_103545576	Not Available	807	Open in IMG/M
3300012212\|Ga0150985_106160194	Not Available	906	Open in IMG/M
3300012385\|Ga0134023_1212760	Not Available	786	Open in IMG/M
3300012388\|Ga0134031_1092476	Not Available	734	Open in IMG/M
3300012400\|Ga0134048_1007500	Not Available	732	Open in IMG/M
3300012401\|Ga0134055_1151708	Not Available	692	Open in IMG/M
3300012402\|Ga0134059_1174433	Not Available	810	Open in IMG/M
3300012402\|Ga0134059_1260250	Not Available	790	Open in IMG/M
3300012407\|Ga0134050_1302410	Not Available	784	Open in IMG/M
3300012407\|Ga0134050_1404484	Not Available	706	Open in IMG/M
3300012469\|Ga0150984_123641220	Not Available	817	Open in IMG/M
3300016698\|Ga0181503_1211174	Not Available	533	Open in IMG/M
3300016700\|Ga0181513_1102471	Not Available	762	Open in IMG/M
3300016700\|Ga0181513_1235556	Not Available	825	Open in IMG/M
3300016701\|Ga0181509_1104867	Not Available	821	Open in IMG/M
3300016702\|Ga0181511_1517471	Not Available	704	Open in IMG/M
3300016705\|Ga0181507_1226704	Not Available	820	Open in IMG/M
3300016705\|Ga0181507_1228202	Not Available	821	Open in IMG/M
3300016728\|Ga0181500_1126993	Not Available	649	Open in IMG/M
3300016730\|Ga0181515_1132956	Not Available	713	Open in IMG/M
3300016730\|Ga0181515_1186628	Not Available	743	Open in IMG/M
3300016730\|Ga0181515_1447701	Not Available	679	Open in IMG/M
3300016750\|Ga0181505_10096840	Not Available	758	Open in IMG/M
3300016750\|Ga0181505_10340427	Not Available	705	Open in IMG/M
3300019155\|Ga0184568_101695	Not Available	766	Open in IMG/M
3300019189\|Ga0184585_118337	Not Available	805	Open in IMG/M
3300019199\|Ga0187789_1005365	Not Available	821	Open in IMG/M
3300019199\|Ga0187789_1109183	Not Available	814	Open in IMG/M
3300019199\|Ga0187789_1312443	Not Available	810	Open in IMG/M
3300019211\|Ga0187799_1099337	Not Available	598	Open in IMG/M
3300019211\|Ga0187799_1282818	Not Available	807	Open in IMG/M
3300019217\|Ga0179946_1207161	Not Available	804	Open in IMG/M
3300019244\|Ga0180111_1081127	Not Available	745	Open in IMG/M
3300019244\|Ga0180111_1317945	Not Available	808	Open in IMG/M
3300019245\|Ga0187791_1095405	Not Available	824	Open in IMG/M
3300019245\|Ga0187791_1140210	Not Available	788	Open in IMG/M
3300019245\|Ga0187791_1394998	Not Available	795	Open in IMG/M
3300019246\|Ga0172287_1008267	Not Available	658	Open in IMG/M
3300019250\|Ga0187790_1094780	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	707	Open in IMG/M
3300019250\|Ga0187790_1106901	Not Available	824	Open in IMG/M
3300019250\|Ga0187790_1171131	Not Available	807	Open in IMG/M
3300019250\|Ga0187790_1341569	Not Available	582	Open in IMG/M
3300019250\|Ga0187790_1344346	Not Available	712	Open in IMG/M
3300019251\|Ga0187795_1275357	Not Available	524	Open in IMG/M
3300019251\|Ga0187795_1335856	Not Available	624	Open in IMG/M
3300019256\|Ga0181508_1607623	Not Available	1306	Open in IMG/M
3300019260\|Ga0181506_1145116	Not Available	924	Open in IMG/M
3300019264\|Ga0187796_1087585	Not Available	704	Open in IMG/M
3300019264\|Ga0187796_1284678	Not Available	834	Open in IMG/M
3300019265\|Ga0187792_1116842	Not Available	528	Open in IMG/M
3300019265\|Ga0187792_1410352	Not Available	832	Open in IMG/M
3300019265\|Ga0187792_1412725	Not Available	833	Open in IMG/M
3300019270\|Ga0181512_1546536	Not Available	695	Open in IMG/M
3300019273\|Ga0187794_1028557	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	817	Open in IMG/M
3300019275\|Ga0187798_1267409	Not Available	811	Open in IMG/M
3300019275\|Ga0187798_1368121	Not Available	612	Open in IMG/M
3300019278\|Ga0187800_1165058	Not Available	813	Open in IMG/M
3300019279\|Ga0184642_1507633	Not Available	617	Open in IMG/M
3300019284\|Ga0187797_1481890	Not Available	740	Open in IMG/M
3300019284\|Ga0187797_1801230	Not Available	815	Open in IMG/M
3300019284\|Ga0187797_1827727	Not Available	655	Open in IMG/M
3300020063\|Ga0180118_1229753	Not Available	799	Open in IMG/M
3300020078\|Ga0206352_11150782	Not Available	564	Open in IMG/M
3300020082\|Ga0206353_10186756	Not Available	582	Open in IMG/M
3300021307\|Ga0179585_1165112	Not Available	706	Open in IMG/M
3300021855\|Ga0213854_1098153	Not Available	804	Open in IMG/M
3300021855\|Ga0213854_1242483	Not Available	806	Open in IMG/M
3300021856\|Ga0213850_1116418	Not Available	774	Open in IMG/M
3300021857\|Ga0213849_1196108	Not Available	825	Open in IMG/M
3300021860\|Ga0213851_1084695	Not Available	820	Open in IMG/M
3300021861\|Ga0213853_11116855	Not Available	815	Open in IMG/M
3300021909\|Ga0213846_1099468	Not Available	545	Open in IMG/M
3300022506\|Ga0242648_1024490	Not Available	798	Open in IMG/M
3300022726\|Ga0242654_10084877	Not Available	968	Open in IMG/M
3300023542\|Ga0247540_103031	Not Available	575	Open in IMG/M
3300023690\|Ga0247512_119771	Not Available	576	Open in IMG/M
3300030589\|Ga0210255_10931392	Not Available	797	Open in IMG/M
3300030730\|Ga0307482_1091516	Not Available	818	Open in IMG/M
3300030815\|Ga0265746_1030397	Not Available	693	Open in IMG/M
3300030852\|Ga0075389_10041142	Not Available	831	Open in IMG/M
3300030862\|Ga0265753_1038980	Not Available	802	Open in IMG/M
3300030877\|Ga0265777_106576	Not Available	795	Open in IMG/M
3300030902\|Ga0308202_1041557	Not Available	815	Open in IMG/M
3300030913\|Ga0265759_105880	Not Available	622	Open in IMG/M
3300030967\|Ga0075399_11357686	Not Available	677	Open in IMG/M
3300030969\|Ga0075394_12094188	Not Available	783	Open in IMG/M
3300030975\|Ga0099845_1049188	Not Available	584	Open in IMG/M
3300030982\|Ga0265748_111042	Not Available	500	Open in IMG/M
3300030989\|Ga0308196_1016429	Not Available	826	Open in IMG/M
3300030990\|Ga0308178_1041435	Not Available	829	Open in IMG/M
3300031011\|Ga0265774_103677	Not Available	616	Open in IMG/M
3300031041\|Ga0265755_104157	Not Available	808	Open in IMG/M
3300031047\|Ga0073995_10011678	Not Available	557	Open in IMG/M
3300031090\|Ga0265760_10130509	Not Available	812	Open in IMG/M
3300031092\|Ga0308204_10098173	Not Available	803	Open in IMG/M
3300031093\|Ga0308197_10153985	Not Available	742	Open in IMG/M
3300031122\|Ga0170822_16924369	Not Available	784	Open in IMG/M
3300031128\|Ga0170823_10578333	Not Available	667	Open in IMG/M
3300031128\|Ga0170823_15264471	Not Available	796	Open in IMG/M
3300031421\|Ga0308194_10103034	Not Available	823	Open in IMG/M
3300031421\|Ga0308194_10287509	Not Available	565	Open in IMG/M
3300031421\|Ga0308194_10355006	Not Available	523	Open in IMG/M
3300031422\|Ga0308186_1010318	Not Available	804	Open in IMG/M
3300031423\|Ga0308177_1017561	Not Available	607	Open in IMG/M
3300031590\|Ga0307483_1010142	Not Available	817	Open in IMG/M
3300031590\|Ga0307483_1024010	Not Available	611	Open in IMG/M
3300031663\|Ga0307484_104735	Not Available	813	Open in IMG/M
3300031678\|Ga0310114_112221	Not Available	826	Open in IMG/M
3300031686\|Ga0310119_116726	Not Available	824	Open in IMG/M
3300031891\|Ga0316039_106873	Not Available	730	Open in IMG/M
3300032515\|Ga0348332_11675004	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	1277	Open in IMG/M
3300032515\|Ga0348332_12936373	Not Available	528	Open in IMG/M
3300034666\|Ga0314788_050823	Not Available	817	Open in IMG/M
3300034670\|Ga0314795_040446	Not Available	793	Open in IMG/M
3300034674\|Ga0314799_034490	Not Available	580	Open in IMG/M
3300034680\|Ga0370541_014674	Not Available	831	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	93.75%
Host-Associated	Host-Associated	5.00%
Engineered	Engineered	1.25%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	65.62%
Aquatic	Environmental → Aquatic	28.12%
Plants	Host-Associated → Plants	4.38%
Human	Host-Associated → Human	0.62%
Wastewater	Engineered → Wastewater	0.62%
Bioreactor	Engineered → Bioreactor	0.62%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	64.38%
Freshwater	Environmental → Aquatic → Freshwater	28.12%
Rhizosphere	Host-Associated → Plants → Rhizosphere	2.50%
Rhizoplane	Host-Associated → Plants → Rhizoplane	1.88%
Plant Litter	Environmental → Terrestrial → Plant Litter	1.25%
Digestive System	Host-Associated → Human → Digestive System	0.62%
Anaerobic Digestor	Engineered → Wastewater → Anaerobic Digestor	0.62%
Anaerobic	Engineered → Bioreactor → Anaerobic	0.62%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	47.50%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	16.88%
Sediment	Environmental → Aquatic → Freshwater → Sediment	13.75%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	10.62%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater	2.50%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	1.88%
Soil	Host-Associated → Plants → Rhizosphere → Soil	1.88%
Unclassified	Environmental → Terrestrial → Plant Litter → Unclassified	1.25%
Lake	Environmental → Aquatic → Freshwater → Lake	0.62%
Unclassified	Environmental → Aquatic → Freshwater → Unclassified	0.62%
Large Intestine	Host-Associated → Human → Digestive System → Large Intestine	0.62%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	0.62%
Unclassified	Engineered → Wastewater → Anaerobic Digestor → Unclassified	0.62%
Unclassified	Engineered → Bioreactor → Anaerobic → Unclassified	0.62%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	34.38%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	16.88%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	13.75%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	10.00%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	10.00%
Unclassified	Environmental → Aquatic → Freshwater → Groundwater → Unclassified	2.50%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	1.88%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	1.88%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	1.88%
Tropical Rainforest	Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest	1.25%
Unclassified	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified	1.25%
Unclassified	Environmental → Aquatic → Freshwater → Lake → Unclassified	0.62%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	0.62%
Unclassified	Environmental → Aquatic → Freshwater → Unclassified → Unclassified	0.62%
Fecal	Host-Associated → Human → Digestive System → Large Intestine → Fecal	0.62%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	0.62%
Unclassified	Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified	0.62%
Unclassified	Engineered → Bioreactor → Anaerobic → Unclassified → Unclassified	0.62%

Habitat	Taxonomy	Distribution
Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Peatland	16.88%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	16.25%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	10.00%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	8.75%
Watersheds	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Watersheds	6.25%
Wetland	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Wetland	5.00%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	5.00%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	5.00%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	2.50%
Soil	Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Soil	2.50%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	2.50%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	2.50%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	1.88%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere	1.88%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere	1.88%
Boreal Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Boreal Forest Soil	1.88%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	1.25%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	1.25%
Plant Litter	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified → Plant Litter	1.25%
Tropical Rainforest Soil	Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest → Tropical Rainforest Soil	1.25%
Freshwater Lake	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake	0.62%
Wetland	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Wetland	0.62%
River Water	Environmental → Aquatic → Freshwater → Unclassified → Unclassified → River Water	0.62%
Host-Associated	Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated	0.62%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	0.62%
Anaerobic Digestor Sludge	Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge	0.62%
Anaerobic Bioreactor Biomass	Engineered → Bioreactor → Anaerobic → Unclassified → Unclassified → Anaerobic Bioreactor Biomass	0.62%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300002864	Avena fatua rhizosphere microbial communities - H2_Rhizo_Litter_7 (Metagenome Metatranscriptome, Counting Only)	Host-Associated	Open in IMG/M
3300002868	Avena fatua rhizosphere microbial communities - H2_Bulk_Litter_10 (Metagenome Metatranscriptome, Counting Only)	Host-Associated	Open in IMG/M
3300003569	Grassland soil microbial communities from Hopland, California, USA - Sample H2_Bulk_36 (Metagenome Metatranscriptome, Counting Only)	Host-Associated	Open in IMG/M
3300004801	Switchgrass rhizosphere and bulk soil microbial communities from Kellogg Biological Station, Michigan, USA for expression studies - roots SR-3 (Metagenome Metatranscriptome)	Host-Associated	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300006860	Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 63 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006937	Tropical rainforest soil microbial communities from the Amazon Forest, Brazil, analyzing deforestation - Metatranscriptome F II A01 (Metagenome Metatranscriptome) (version 2)	Environmental	Open in IMG/M
3300006938	Tropical rainforest soil microbial communities from the Amazon Forest, Brazil, analyzing deforestation - Metatranscriptome P72I A001 (Metagenome Metatranscriptome) (version 2)	Environmental	Open in IMG/M
3300007219	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaT_SC_2013 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300009235	Microbial communities of water from Amazon river, Brazil - RCM10	Environmental	Open in IMG/M
3300009580	Wetland microbial communities from Old Woman Creek Reserve in Ohio, USA - Mud_11_14_C (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300009581	Wetland microbial communities from Old Woman Creek Reserve in Ohio, USA - Mud_9_15_A (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300009582	Wetland microbial communities from Old Woman Creek Reserve in Ohio, USA - Mud_9_15_B (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300009583	Wetland microbial communities from Old Woman Creek Reserve in Ohio, USA - Plant_9_15_B (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300009755	Wetland microbial communities from Old Woman Creek Reserve in Ohio, USA - Plant_11_14_B (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010087	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Met_40_5_0_1 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010096	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Met_20_5_4_1 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010110	Soil microbial communities from Illinois, USA to study soil gas exchange rates - BV-IL-AGR metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010131	Wetland microbial communities from Old Woman Creek Reserve in Ohio, USA - Mud_11_14_A (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010137	Soil microbial communities from California, USA to study soil gas exchange rates - SR-CA-SC1 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010139	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Met_20_2_8_1 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010146	Soil microbial communities from California, USA to study soil gas exchange rates - JR-CA-SND metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010147	Soil microbial communities from California, USA to study soil gas exchange rates - BB-CA-RED metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010861	Boreal forest soil eukaryotic communities from Alaska, USA - C4-5 Metatranscriptome (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300010867	Boreal forest soil eukaryotic communities from Alaska, USA - C3-5 Metatranscriptome (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300011027	Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 70 (Metagenome Metatranscriptome) (version 2)	Environmental	Open in IMG/M
3300011046	Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 68 (Metagenome Metatranscriptome) (version 2)	Environmental	Open in IMG/M
3300011054	Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 1 (Metagenome Metatranscriptome) (version 2)	Environmental	Open in IMG/M
3300011069	Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 19 (Metagenome Metatranscriptome) (version 2)	Environmental	Open in IMG/M
3300011073	Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 74 (Metagenome Metatranscriptome) (version 2)	Environmental	Open in IMG/M
3300011086	Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 49 (Metagenome Metatranscriptome) (version 2)	Environmental	Open in IMG/M
3300011282	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaT_SC_2012 (Metagenome Metatranscriptome) (version 2)	Environmental	Open in IMG/M
3300011340	Combined Assembly of Wetland Metatranscriptomes	Environmental	Open in IMG/M
3300012212	Combined assembly of Hopland grassland soil	Host-Associated	Open in IMG/M
3300012385	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_20cm_2_4_1 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012388	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_20cm_2_24_2 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012400	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_40cm_2_4_2 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012401	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_40cm_5_16_1 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012402	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_40cm_5_8_2 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012407	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_40cm_2_16_2 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012409	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_40cm_2_16_1 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012469	Combined assembly of Soil carbon rhizosphere	Host-Associated	Open in IMG/M
3300012763	Freshwater microbial communities from Lake Simoncouche, Canada - S_140108_E_mt (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300016698	Metatranscriptome of peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin02_30_metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300016700	Metatranscriptome of peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin17_30_metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300016701	Metatranscriptome of peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin10_30_metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300016702	Metatranscriptome of peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin11_30_metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300016705	Metatranscriptome of peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin06_30_metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300016728	Metatranscriptome of peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin01_10_metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300016730	Metatranscriptome of peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin23_30_metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300016750	Metatranscriptome of peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin05_30_metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019155	Spruce litter microbial communities from Bohemian Forest, Czech Republic ? CLI1 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019189	Soil microbial communities from Bohemian Forest, Czech Republic ? CSU3 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019199	Metatranscriptome of tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP05_10_MT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019211	Metatranscriptome of tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_BV02_MP12_10_MT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019217	Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from Japan ? AD_JPNNA4_MetaT (Metagenome Metatranscriptome)	Engineered	Open in IMG/M
3300019244	Metatranscriptome of soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaT ERMLT293_16_1Ra (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019245	Metatranscriptome of tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP10_10_MT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019246	Wetland microbial communities from Old Woman Creek Reserve in Ohio, USA - Plant_deep_8_15_core_2 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019250	Metatranscriptome of tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP05_20_MT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019251	Metatranscriptome of tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP15_10_MT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019252	Wetland microbial communities from Old Woman Creek Reserve in Ohio, USA - Plant_deep_8_15_core_1 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019256	Metatranscriptome of peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin10_10_metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019260	Metatranscriptome of peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin06_10_metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019264	Metatranscriptome of tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP15_20_MT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019265	Metatranscriptome of tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP10_20_MT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019270	Metatranscriptome of peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin17_10_metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019273	Metatranscriptome of tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP02_20_MT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019275	Metatranscriptome of tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_BV02_MP05_20_MT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019278	Metatranscriptome of tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_BV02_MP12_20_MT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019279	Metatranscriptome of groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_30 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019284	Metatranscriptome of tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_BV02_MP05_10_MT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300020063	Metatranscriptome of soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaT ERMLT730_16_1Ra (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300020078	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-5 (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300020082	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-4 (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300021151	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_06_16RNAfungal (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300021307	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_06_16RNAfungal (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300021855	Metatranscriptome of freshwater sediment microbial communities from pre-fracked creek in Pennsylvania, United States - G-2016_18 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300021856	Metatranscriptome of freshwater microbial communities from post-fracked creek in Pennsylvania, United States - LL:C (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300021857	Metatranscriptome of freshwater microbial communities from pre-fracked creek in Pennsylvania, United States - WE:C (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300021860	Metatranscriptome of freshwater sediment microbial communities from post-fracked creek in Pennsylvania, United States - ABR_2014 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300021861	Metatranscriptome of freshwater sediment microbial communities from post-fracked creek in Pennsylvania, United States - ABR_2016 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300021909	Metatranscriptome of freshwater microbial communities from post-fracked creek in Pennsylvania, United States - NH:C (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300022506	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-26-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022652	Metatranscriptome of anaerobic ammonium oxidizing microbial communities from anammox membrane bioreactor (MBR) in UC Berkley, California, United States - LAC_MetaT_3 (Metagenome Metatranscriptome)	Engineered	Open in IMG/M
3300022720	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-O (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022726	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-30-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300023542	Metatranscriptome of soil microbial communities from Bohemian Forest, Czech Republic ? CSI4 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300023690	Metatranscriptome of spruce roots microbial communities from Bohemian Forest, Czech Republic - CRI1 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300030589	Metatranscriptome of forest soil microbial communities from Boreal Montmorency Forest, Quebec, Canada - FO133-ANR019SO (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300030730	Metatranscriptome of hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_05 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300030815	Metatranscriptome of soil microbial communities from Maridalen valley, Oslo, Norway - NSU2 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300030852	Forest soil microbial communities from France for metatranscriptomics studies - Site 11 - Champenoux / Amance forest - OB2 Emin (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300030862	Metatranscriptome of soil microbial communities from Maridalen valley, Oslo, Norway - NSE5 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300030877	Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZA4 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300030902	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_356 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300030913	Metatranscriptome of soil microbial communities from Maridalen valley, Oslo, Norway - NSA6 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300030967	Forest soil microbial communities from France for metatranscriptomics studies - Site 11 - Champenoux / Amance forest - FA11 Emin (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300030969	Forest soil microbial communities from France for metatranscriptomics studies - Site 11 - Champenoux / Amance forest - FA12 Emin (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300030975	Forest soil eukaryotic communities from Alaska, USA, for a soil warming experiment in a boreal forest - Alaskan Soil AK pilot (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300030982	Metatranscriptome of soil microbial communities from Maridalen valley, Oslo, Norway - NSU5 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300030989	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_197 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300030990	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_149 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031011	Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZE6 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031041	Metatranscriptome of soil microbial communities from Maridalen valley, Oslo, Norway - NSA1 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031047	Metatranscriptome of forest soil microbial communities from Montana, USA - Site 5 -Soil GP-1B (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300031057	Oak Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031090	Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZI1 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031092	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_367 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031093	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_198 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031122	Oak Spring Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031128	Oak Summer Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031421	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_195 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031422	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_181 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031423	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_148 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031590	Metatranscriptome of hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_515 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031663	Metatranscriptome of hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_05 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031678	Metatranscriptome of spruce roots microbial communities from Maridalen valley, Oslo, Norway - NRE6 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031686	Metatranscriptome of spruce roots microbial communities from Maridalen valley, Oslo, Norway - NRA6 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031891	Spruce litter microbial communities from Bohemian Forest, Czech Republic ? CLA3 metaT (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300032515	FICUS49499 Metatranscriptome Czech Republic combined assembly (additional data)	Environmental	Open in IMG/M
3300034666	Metatranscriptome of lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C8R2 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300034670	Metatranscriptome of lab incibated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C8R4 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300034674	Metatranscriptome of lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C0R3 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300034680	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_116 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
Ga0006764J43180_1002992	3300002864	Avena Fatua Rhizosphere	VTDGPATRPKTPLAVENSVGKLAAPEGGAKCQPGKESVANSHP
Ga0006767J43181_1003641	3300002868	Avena Fatua Rhizosphere	VTDGPATRPKTPLAVENSVGKLAAPEGGAKCQPGKESVANSHPP
Ga0007420J51693_10005652	3300003569	Avena Fatua Rhizosphere	VTDGPATRPKTPLAVENSVGKLAAPEGGAKCQPGKESVANSH
Ga0058860_100831571	3300004801	Host-Associated	MRPKTPLAVENGVGKLAAFDGAKCQRGKESVANSHPPFGP
Ga0075425_1010100812	3300006854	Populus Rhizosphere	MTPLAVENSVGKLAAALRRGAQCQHGKESMANSHPPFGP
Ga0063829_10148993	3300006860	Peatlands Soil	MTPLAVENSVGKLAASLWGAKCQHGKESMANSHPPFSPC
Ga0063829_14798821	3300006860	Peatlands Soil	MRPDTPPAVENGVGKLAAPQGRAQCQRGKESMANSQ
Ga0081243_14091261	3300006937	Tropical Rainforest Soil	MTPLAVENSVGKLAAALRRGAKCQHGKESMANSHP
Ga0081245_14854592	3300006938	Tropical Rainforest Soil	MRPLTPLAVENGVGKLAALPWQSAQCQRGKESVANSH
Ga0075025_10271131	3300007219	Watersheds	MTPLAVENSVGKLAAPHRGGAQCQHGKESMANSHP
Ga0075025_13373181	3300007219	Watersheds	MRPVTPLAVENGVGKPAAPQGRAKCRPGKESVANSHP
Ga0103857_100550311	3300009235	River Water	MTPLAVENSVGKLAVLRRQDAQCQRGKESVASSHPPFS
Ga0115596_10055391	3300009580	Wetland	MTPLAVENSVGKLAAPLRRGAQCQHGKESLANSHPPF
Ga0115600_11862781	3300009581	Wetland	MRPQTPLAVENGVGKLAAIEGAQCQPGKESVANSHPPF
Ga0115601_10530981	3300009582	Wetland	MRPQTPLAVENGVGKLAAIEGAQCQPGKESVANSHPP
Ga0115598_10470192	3300009583	Wetland	MRPQTPLAVENGVGKLAAIEGAQCQPGKESVANSH
Ga0115592_10428432	3300009755	Wetland	MRPHTPLAVENSVGKLAAIQGAQCQPGKESVANSH
Ga0127492_10949811	3300010087	Grasslands Soil	MRPKTPLAVENSVGKLAAPPRRGAKCQHGKESMAN
Ga0127473_11006031	3300010096	Grasslands Soil	VTDGPATRPKTPLAVENSVGKLAAPEGGAKCQPGKES
Ga0126316_10570641	3300010110	Soil	MTPLAVENSVGKLAAPPRGCAKCQHGKESMANSHPPFSP
Ga0115594_11504031	3300010131	Wetland	MRPHTPLAVENSVGKLAAIQGAQCQPGKESVANSHPP
Ga0126323_11968841	3300010137	Soil	MRPVTPLAVENGVGKLAALCGAQCQHGKESVANSHP
Ga0127464_10005401	3300010139	Grasslands Soil	MRPETPLAVENSVGKLAAPKRGAKCQHGKESMANS
Ga0127464_10344181	3300010139	Grasslands Soil	VTDGPATRPKTPLAVENSVGKLAAPEGGAKCQPGKESVAN
Ga0126320_10541641	3300010146	Soil	MTPLAVENSVGKLAAPLWRGAQCQHGKESMANSHP
Ga0126319_10400031	3300010147	Soil	MTPLAVENSVGKLAAPPRRGAQCQHGKESMANSHP
Ga0126349_12233981	3300010861	Boreal Forest Soil	MRPATPLAVENGVGKLAAPLTRGAQCQRGKESMANSHPP
Ga0126347_14369511	3300010867	Boreal Forest Soil	LLSGPATRPVTPLAVENSVGKLAALLRQGAQCQRGKESMANSH
Ga0138580_1179251	3300011027	Peatlands Soil	MTPLAVENSVGKLAASLWGAKCQHGKESMANSHPPFSPCP
Ga0138600_1149861	3300011046	Peatlands Soil	MTPLAVENSVGKLAASLWGAKCQHGKESMANSHPPFSPCPA
Ga0138523_10749251	3300011054	Peatlands Soil	MTPLAVENSVGKLAAPPRRGAKCQHGKESMANSHP
Ga0138592_10634522	3300011069	Peatlands Soil	MRPETPLAVENSVGKLAASLWGAKCQHGKESMANSH
Ga0138584_10783791	3300011073	Peatlands Soil	MRPDTPPAVENGVGKLAAPQGRAQCQRGKESMANSQT
Ga0138564_10593731	3300011086	Peatlands Soil	MRPMTPLVVENSVGKLAASLWGAKCQHGKESMANSHP
Ga0138293_1352081	3300011282	Watersheds	MRSQTPLAVENSVGKLAAPLTQGAQCQRGKESLANSHPPF
Ga0151652_130397121	3300011340	Wetland	MRPATPLAVENGVGKLAAQDGAQCQPGKESVANSHPQICP
Ga0150985_1035455761	3300012212	Avena Fatua Rhizosphere	MRPKTPLAVENGVGKLAAPLCGSAKCQHGKERAANS
Ga0150985_1061601941	3300012212	Avena Fatua Rhizosphere	MRPVTPLAVENGVGKLAALCGAQCQHGKESVANSHPPFCP
Ga0134023_12127601	3300012385	Grasslands Soil	VTDGPATRPKTPLAVENSVGKLAAPEGGAKCQPGKESM
Ga0134031_10924762	3300012388	Grasslands Soil	MRPTTPLAVENGVWKLTAPARVCAQCQRGKESVANSH
Ga0134048_10075001	3300012400	Grasslands Soil	MRPKTPLAVENSVGKLAAPPRRGAKCQHGKESMANSHP
Ga0134055_11517081	3300012401	Grasslands Soil	MTPLAVENSVGKLAAPETRRLMPAKGKERVANSHPPFG
Ga0134059_11744331	3300012402	Grasslands Soil	MRPATPLAVENSVGKLAALSRRGAKCQHGKRELGE
Ga0134059_12310122	3300012402	Grasslands Soil	LSGPATRPKTPLAVENSVGKLAALETGSAQCQHGKESMANSHP
Ga0134059_12602501	3300012402	Grasslands Soil	MRPETPLVLGENGVGKLAAKPFGAKCQRGKESVANS
Ga0134050_13024101	3300012407	Grasslands Soil	MTPLAVENSVGKLAAPPQGGGAKCQRGKERVANSHP
Ga0134050_14044841	3300012407	Grasslands Soil	MTPLAVENSVGKLAAPLWRGAQCQHGKESMANSHPP
Ga0134045_10579432	3300012409	Grasslands Soil	LSGPATRPKTPLAVENSVVKLAALETGSAQCQHGKESM
Ga0150984_1236412201	3300012469	Avena Fatua Rhizosphere	MRPKTPLAVENGVGKLAAPLCGSAKCQHGKERAANSHS
Ga0138289_10628861	3300012763	Freshwater Lake	MRPMTPLAVENGVGKTAAPARVRAQCRPGKERLANSQ
Ga0181503_12111741	3300016698	Peatland	PLAVENGVGNPAALERRRLMPVGKERLANSHPPFARR
Ga0181513_11024711	3300016700	Peatland	MRPKIPLAVENGVGKLAAPEGRAQCQHGKESMANSQT
Ga0181513_12355561	3300016700	Peatland	MRPETPPAVENGVGKLAAPQGRAQCQRGKESMANSQTPICSC
Ga0181509_11048672	3300016701	Peatland	MRPEIPFAAENGVGKLAALKGAQCQPGKERLANSQSPICLR
Ga0181511_15174711	3300016702	Peatland	MRPKTPLAVENGVGKPAAPQGRAKCRPGKESVANSHP
Ga0181507_12267041	3300016705	Peatland	MRPETPPAVENGVGKLAAPQGRAQCQHGKESMANSQTPIC
Ga0181507_12282021	3300016705	Peatland	MRPKIPLAVENGVGKLAAPEGRAQCQHGKESMANSQTPIC
Ga0181500_11269931	3300016728	Peatland	MRPQTPLAVENGVGKPAAPQGCAKCRPGKESMANSHPPF
Ga0181515_11329561	3300016730	Peatland	MRPKIPLAVENGVGKLAAPEGRAQCQHGKESMANS
Ga0181515_11866281	3300016730	Peatland	MRPGTPLAVENGVGKLAAPRGRAQCQQGKESMANS
Ga0181515_14477011	3300016730	Peatland	MRPETPPAVENGVGKLAAPQGRAQCQHGKESMANS
Ga0181505_100968402	3300016750	Peatland	MRPETPPAVENGVGKLAAPQGRAQCQHGKESMANSQ
Ga0181505_103404271	3300016750	Peatland	MRPTIPLAVENGVGKLAAPQGCAQCQHGKERVAYS
Ga0184568_1016951	3300019155	Soil	MRPQIPLAVENGVGKLAAPQGCAQCQRGKERVANSQ
Ga0184585_1183371	3300019189	Soil	MRPQIPLAVENGVGKLAAPQGCAQCQRGKERVANS
Ga0187789_10053651	3300019199	Peatland	MTPLAVENSVGKLAAALRRGAQCQHGKESMANSHP
Ga0187789_11091831	3300019199	Peatland	MTPLAVENSVGKLAATPWRGAQCQPGKESMANSHP
Ga0187789_13124431	3300019199	Peatland	MRPATPLAAENGVGKLAAALGAKCQHGKESVANSHP
Ga0187799_10993371	3300019211	Peatland	MRPETPLAVENGVGKLAAPQGCAQCQRGKESMANSQ
Ga0187799_12828181	3300019211	Peatland	MRPKTPLAVENGVGKPAAPQGCAKCRPGKESVANSHPP
Ga0179946_12071611	3300019217	Anaerobic Digestor Sludge	LDGPATRPKTPLAVENSVGKLAATGAQRQHGKESVANSHPPFSPC
Ga0180111_10811271	3300019244	Groundwater Sediment	MRPVTPLAVENGVGKLAAPRGAQCQHGKESVANSHP
Ga0180111_13179451	3300019244	Groundwater Sediment	MRPNTPLAVENSVGKPAAMPRHGAKCRPGKESVANSHP
Ga0187791_10954051	3300019245	Peatland	MTPLAVENSVGKLAATPWRGAQCQPGKESMANSHPPLLR
Ga0187791_11402101	3300019245	Peatland	MRPQTPLAVENSVGKLAAPLTQGAQCQRGKESLANSH
Ga0187791_13949981	3300019245	Peatland	MLDGPATRPKTPLAVENSVGKLAAPQRGAQCQHGKE
Ga0172287_10082671	3300019246	Wetland	MTPLAVENGVGKPAAPARVCAQCRRGKESVANSHP
Ga0187790_10947801	3300019250	Peatland	VENSVGKLAAPPGGGAKCQHGKESVANSQPPFSPCS
Ga0187790_11069011	3300019250	Peatland	MTPLAVENSVGKLAATPWRGAQCQPGKESMANSHPP
Ga0187790_11711311	3300019250	Peatland	MRPATPLAAENGVGKLAAALGAKCQHGKESVANSH
Ga0187790_13415691	3300019250	Peatland	MTPLAVENSVGKLAAPHRGRAQCQHGKESVANSHPPFSP
Ga0187790_13443461	3300019250	Peatland	MRPKTPLAVENSVGKLAAPRRGAQCQHGKESVANSH
Ga0187795_12753571	3300019251	Peatland	MTPLAVENSVGKLAAPHRGRAQCQHGKESMANSHP
Ga0187795_13358561	3300019251	Peatland	MRPATPLAVENGVGKLAAPEGCAQCQRGKESVANSQPPI
Ga0172286_11503801	3300019252	Wetland	MRPKTPLAVENGVGKPAALRGAQCRHGKESVANSHPP
Ga0181508_16076231	3300019256	Peatland	MRPETPLAVENGVGKLTAPKGRAQCQHGKESMANSQTPI
Ga0181506_11451161	3300019260	Peatland	MRPKTPLAVENGVGKPAAPQGRAKCRPGKESVANSHPPFVP
Ga0187796_10875851	3300019264	Peatland	MRPATPLAVENGVGKLAAQWGAQCQRGKESVAHSHP
Ga0187796_12846782	3300019264	Peatland	MRPMTPLAVENSVGKLTALLTRGAKCQRGKESVANSHP
Ga0187792_11168421	3300019265	Peatland	MTPLAVENSVGKLAAALRRGAQCQHGKESMANSHPPFGPC
Ga0187792_14103521	3300019265	Peatland	MTPLAVENSVGKLAATPWRGAQCQPGKESMANSHPPFG
Ga0187792_14127251	3300019265	Peatland	MRPQTPLAVENSVGKLAAPLTQGAQCQRGKESLANSHPPFSP
Ga0181512_15465361	3300019270	Peatland	MRPKTPLAVENGVGKPAAPQGRAKCRPGKESVANSHPP
Ga0187794_10285571	3300019273	Peatland	MRPEIPLAAENGVGKLAAALGAKCQHGKESVANSHPQIC
Ga0187798_12674091	3300019275	Peatland	MTPLAVENSVGKLTALLRQGAQCQRGKESVANSHPPF
Ga0187798_13681211	3300019275	Peatland	MRPQTPLAVENGVGKLAAPQGCAQCQRGKESMANSQTPIC
Ga0187800_11650581	3300019278	Peatland	MRPLTPLAVENSVGKLPAPLWRGAQWQRGKESVANSHH
Ga0184642_15076331	3300019279	Groundwater Sediment	MRPRTPLGVENGVGKLAAKFGAKCQRGKESVANSHPR
Ga0187797_14818901	3300019284	Peatland	MDGPATRPMTPLAVENSVGKLTALLRRGAQCQRGKESVANSH
Ga0187797_18012302	3300019284	Peatland	MRPLTPLAVENSVGKLTAERKRGAQCQRGKESVANSH
Ga0187797_18277271	3300019284	Peatland	MRPLTPLAVENSVGKLTAPPRRGAQCQRGKESVANSHPP
Ga0180118_12297531	3300020063	Groundwater Sediment	MTPLAVENSVGKLAAPLCGRAQCQHGKESVANSHPP
Ga0206352_111507821	3300020078	Corn, Switchgrass And Miscanthus Rhizosphere	MTPLAVENSVGKLAAALRRGAQCQHGKESMANSHPP
Ga0206353_101867561	3300020082	Corn, Switchgrass And Miscanthus Rhizosphere	MTPLAVENSVGKLAAALRRGAQCQHGKESMANSHPPFVPVRP
Ga0179584_12116121	3300021151	Vadose Zone Soil	MRPLTPLAVENGVGKLAASPWRGAKCQRGKESLANSHPP
Ga0179585_11651122	3300021307	Vadose Zone Soil	MRPLTPLAVENGVGKLAASPWRGAKCQRGKESLANSH
Ga0213854_10981531	3300021855	Watersheds	MRPKTPLAVENSVGKLAAPPWQGAQCQPGKESMAN
Ga0213854_12424831	3300021855	Watersheds	MRPATPLAVENGVGKLTAPQGCAQCQRGKESMANSHS
Ga0213850_11164181	3300021856	Watersheds	MTPLAVENSVGKLTAPRRGGAKCQHGKESMANSHP
Ga0213849_11961081	3300021857	Watersheds	MRPKTPLAVENSVGKLAAPLTQGAQCQRGKESLANSHP
Ga0213851_10846951	3300021860	Watersheds	MTPLAVENSVGKLTAPRRGGAKCQHGKESMANSHPP
Ga0213853_111168552	3300021861	Watersheds	MTPLAVENSVGKLAAPLWRGAQCQQGKESLAHSHP
Ga0213846_10994681	3300021909	Watersheds	MTPLAVENSVGKLAASLWGAKCQHGKESMANSHPP
Ga0242648_10244902	3300022506	Soil	MTPLAVENSVGKLAALLNRGAQCQRGKESVANSHP
Ga0232059_12575061	3300022652	Anaerobic Bioreactor Biomass	MRPNTPLAVENGVGKLAALPGAKCQHGKESVAHSHP
Ga0242672_10429061	3300022720	Soil	MRLVTPLAVENGVGKPAAPERVRAQCRRGKERVAHSHP
Ga0242654_100848771	3300022726	Soil	MTPLAVENSVGKLAALLNRGAQCQRGKESVANSHPPF
Ga0247540_1030311	3300023542	Soil	MRPETPLAVENGVGKLAAPKGRAQCQQGKESMANS
Ga0247512_1197711	3300023690	Soil	MRPIIPLAVENGVGKLAAPVGCAQCQHGKERSANSQ
Ga0210255_109313922	3300030589	Soil	MRPKTPPAVENGVGKPAAPQGRAKCRPGKESLANS
Ga0307482_10915162	3300030730	Hardwood Forest Soil	MRPQTPLAVENSVGKLAAPLRRGAQCQRGKESLANSHP
Ga0265746_10303971	3300030815	Soil	MRPKTPLAVENGVGKLAAPQGRAQCQQGKESMATS
Ga0075389_100411421	3300030852	Soil	VENSVGKLAASRKRGAQCQRGKESLANSHPPFSPCL
Ga0265753_10389801	3300030862	Soil	MRPKIPLAVENGVGKLTAPQGCAKCQRGKERVANSQ
Ga0265777_1065761	3300030877	Soil	MRPKTPLAVENGVGKLAAPQGRAQCQQGKESMATSQ
Ga0308202_10415572	3300030902	Soil	MTPLAVENSVGKLAAALRRGAQCQPGKESMANSHP
Ga0265759_1058801	3300030913	Soil	MRPDTPLAVENGVGKLAAPQGSAECQHGKESMANSQ
Ga0075399_113576861	3300030967	Soil	MTPVAMENSVGKLAAPHRGSAQCQRGKESVANSHP
Ga0075394_120941881	3300030969	Soil	MTPLAVENSVGKLTAPHRGGAQCQHGKESMANSHPPFSP
Ga0099845_10491881	3300030975	Boreal Forest Soil	MTPLAVENSVGKLAAPLRRGAQCQHGKESMANSHP
Ga0265748_1110421	3300030982	Soil	MRPKTPSAVENGVGKPAAPQGRAKCRPGKESMANSH
Ga0308196_10164292	3300030989	Soil	MTPLAVENSVGKLAAALRRGAQCQPGKESMANSHPPFGP
Ga0308178_10414352	3300030990	Soil	MTPLAVENSVGKLAAALRRGAQCQPGKESMANSHPPFGPC
Ga0265774_1036771	3300031011	Soil	MRPDTPLAVENGVGKLAAPQGSAECQHGKESMANSQP
Ga0265755_1041571	3300031041	Soil	MRPKTPSAVENGVGKPAAPQGRAKCRPGKESMANSHP
Ga0073995_100116781	3300031047	Soil	MRPKIPLAVENSVGKLAAALRCGAQCQPGKESMANSHPPF
Ga0170834_1113776731	3300031057	Forest Soil	MRPRTPLAVENGVGKLAALPWQSAKCQRGKESLANSHP
Ga0265760_101305091	3300031090	Soil	MRPDTPLAVENGVGKLAAPQGSAECQHGKESMANS
Ga0308204_100981731	3300031092	Soil	MRPVTPLAVENGVGKLAALCGAQCQHGKESVANSHPQFCPC
Ga0308197_101539852	3300031093	Soil	MTPLAVENSVGKLAAALRRGAQCQPGKESMANSHPP
Ga0170822_169243691	3300031122	Forest Soil	MTPLAVENSVGKLTAPHCGGAQCQHGKESMANSHP
Ga0170823_105783331	3300031128	Forest Soil	MRPLTPLAVENGVGKLAALPWQSAKCQRGKESLARERRKRKK
Ga0170823_152644712	3300031128	Forest Soil	VENSVGKLAASRKRGAQCQRGKESLANSHPPFSQVV
Ga0308194_101030343	3300031421	Soil	MRPATPLAVENGVGKLAAPLTRGAQCQRGKESMANSHPPLRPCL
Ga0308194_102875091	3300031421	Soil	MRPKTPLAVENGVGKTAAPARARAKCRHGKESMANS
Ga0308194_103550061	3300031421	Soil	MRPATPLAVEYGVGKLAAPLARGAQCQRGKETMANS
Ga0308186_10103181	3300031422	Soil	MRLATPLAVENGVGKLAAPLTRGAQCQRGKESMANS
Ga0308177_10175611	3300031423	Soil	MTPLAVENSVGKLAALLNRGAQCQRGKESVANSHPPFSPCL
Ga0307483_10101421	3300031590	Hardwood Forest Soil	MRPQTPLAVENSVGKLAAPLRRGAQCQRGKESLANSHPPFSPCL
Ga0307483_10240101	3300031590	Hardwood Forest Soil	MTPLAVENSVGKLAAPHCGSAQCQHGKESLANSHP
Ga0307484_1047351	3300031663	Hardwood Forest Soil	MRPQTPLAVENSVGKLAAPLRRGAQCQRGKESLANSH
Ga0310114_1122211	3300031678	Soil	MRPDTPLAVENGVGKLAAPQGSAECQHGKESMANSQPPIC
Ga0310119_1167261	3300031686	Soil	MRPDTPLAVENGVGKLAAPQGSAECQHGKESMANSQPP
Ga0316039_1068731	3300031891	Soil	MRPQIPLAVENGVGKLAAPQGCAQCQRGKERVANSQA
Ga0348332_116750042	3300032515	Plant Litter	MRPKTPLAVENGVGKLAAPQGRAQCQQGKESMATSQT
Ga0348332_129363731	3300032515	Plant Litter	MRPMTPLAVENGVGKLTAPKGCAQCQHAKESMANSQP
Ga0314788_050823_711_815	3300034666	Soil	MTPLAVENSVGKLTAPHRGGAKCQHGKESMANSHP
Ga0314795_040446_2_115	3300034670	Soil	MTPLAVENSVGKLAAALRRGAQCQHGKESMANSHPPFG
Ga0314799_034490_459_578	3300034674	Soil	MPDGPAMRPRIPLAVENSVGKLAAPSGAQCQPGKESMANS
Ga0370541_014674_715_831	3300034680	Soil	MTPLAVENSVGKLAAALRRGAQCQPGKESMANSHPPFSP

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F041060

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences