NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F045003

Metagenome / Metatranscriptome Family F045003

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F045003
Family Type Metagenome / Metatranscriptome
Number of Sequences 153
Average Sequence Length 52 residues
Representative Sequence LKALTLAGLALFLLVILVPFWWIASMSFKTYEQIQFATSIYVPNPFTWENY
Number of Associated Samples 133
Number of Associated Scaffolds 153

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Bacteria
% of genes with valid RBS motifs 71.24 %
% of genes near scaffold ends (potentially truncated) 99.35 %
% of genes from short scaffolds (< 2000 bps) 88.24 %
Associated GOLD sequencing projects 125
AlphaFold2 3D model prediction Yes
3D model pTM-score0.48

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Bacteria (100.000 % of family members)
NCBI Taxonomy ID 2
Taxonomy All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil
(15.686 % of family members)
Environment Ontology (ENVO) Unclassified
(30.719 % of family members)
Earth Microbiome Project Ontology (EMPO) Host-associated → Plant → Plant rhizosphere
(51.634 % of family members)


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Multiple Sequence Alignments

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Transmembrane (alpha-helical) Signal Peptide: No Secondary Structure distribution: α-helix: 49.37%    β-sheet: 0.00%    Coil/Unstructured: 50.63%
Feature Viewer
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  		pTM-score: 0.48
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 153 Family Scaffolds
PF00528BPD_transp_1 83.66
PF01547SBP_bac_1 5.88
PF13416SBP_bac_8 1.96
PF00296Bac_luciferase 1.31
PF02738MoCoBD_1 1.31
PF13371TPR_9 0.65
PF12681Glyoxalase_2 0.65
PF01641SelR 0.65
PF05721PhyH 0.65

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 153 Family Scaffolds
COG2141Flavin-dependent oxidoreductase, luciferase family (includes alkanesulfonate monooxygenase SsuD and methylene tetrahydromethanopterin reductase)Coenzyme transport and metabolism [H] 1.31
COG0229Peptide methionine sulfoxide reductase MsrBPosttranslational modification, protein turnover, chaperones [O] 0.65
COG5285Ectoine hydroxylase-related dioxygenase, phytanoyl-CoA dioxygenase (PhyH) familySecondary metabolites biosynthesis, transport and catabolism [Q] 0.65

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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
All OrganismsrootAll Organisms100.00 %
UnclassifiedrootN/A0.00 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300000956|JGI10216J12902_107645787All Organisms → cellular organisms → Bacteria963Open in IMG/M
3300001915|JGI24741J21665_1009846All Organisms → cellular organisms → Bacteria1736Open in IMG/M
3300002886|JGI25612J43240_1003376All Organisms → cellular organisms → Bacteria2106Open in IMG/M
3300004024|Ga0055436_10282961All Organisms → cellular organisms → Bacteria534Open in IMG/M
3300004052|Ga0055490_10056371All Organisms → cellular organisms → Bacteria1037Open in IMG/M
3300004114|Ga0062593_100173482All Organisms → cellular organisms → Bacteria1675Open in IMG/M
3300004156|Ga0062589_100131220All Organisms → cellular organisms → Bacteria1675Open in IMG/M
3300005294|Ga0065705_10326690All Organisms → cellular organisms → Bacteria989Open in IMG/M
3300005294|Ga0065705_11131567All Organisms → cellular organisms → Bacteria516Open in IMG/M
3300005355|Ga0070671_100159475All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales → Paenibacillaceae1907Open in IMG/M
3300005437|Ga0070710_10043720All Organisms → cellular organisms → Bacteria2483Open in IMG/M
3300005440|Ga0070705_100636773All Organisms → cellular organisms → Bacteria830Open in IMG/M
3300005441|Ga0070700_101408220All Organisms → cellular organisms → Bacteria590Open in IMG/M
3300005445|Ga0070708_100323239All Organisms → cellular organisms → Bacteria1453Open in IMG/M
3300005446|Ga0066686_10451727All Organisms → cellular organisms → Bacteria877Open in IMG/M
3300005458|Ga0070681_11351588All Organisms → cellular organisms → Bacteria636Open in IMG/M
3300005459|Ga0068867_100182570All Organisms → cellular organisms → Bacteria1669Open in IMG/M
3300005467|Ga0070706_100671539All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales961Open in IMG/M
3300005468|Ga0070707_100800388All Organisms → cellular organisms → Bacteria906Open in IMG/M
3300005468|Ga0070707_101925849All Organisms → cellular organisms → Bacteria558Open in IMG/M
3300005471|Ga0070698_100665523All Organisms → cellular organisms → Bacteria983Open in IMG/M
3300005536|Ga0070697_100667011All Organisms → cellular organisms → Bacteria916Open in IMG/M
3300005536|Ga0070697_102001306All Organisms → cellular organisms → Bacteria519Open in IMG/M
3300005545|Ga0070695_100521985All Organisms → cellular organisms → Bacteria921Open in IMG/M
3300005545|Ga0070695_100995135All Organisms → cellular organisms → Bacteria682Open in IMG/M
3300005546|Ga0070696_100601678All Organisms → cellular organisms → Bacteria886Open in IMG/M
3300005557|Ga0066704_10452219All Organisms → cellular organisms → Bacteria849Open in IMG/M
3300005617|Ga0068859_100487182All Organisms → cellular organisms → Bacteria1328Open in IMG/M
3300005713|Ga0066905_101720082All Organisms → cellular organisms → Bacteria577Open in IMG/M
3300005719|Ga0068861_100407960All Organisms → cellular organisms → Bacteria1207Open in IMG/M
3300005895|Ga0075277_1053129All Organisms → cellular organisms → Bacteria630Open in IMG/M
3300005937|Ga0081455_10242707All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes1323Open in IMG/M
3300006031|Ga0066651_10039482All Organisms → cellular organisms → Bacteria2161Open in IMG/M
3300006050|Ga0075028_100239901All Organisms → cellular organisms → Bacteria992Open in IMG/M
3300006050|Ga0075028_100435569All Organisms → cellular organisms → Bacteria755Open in IMG/M
3300006796|Ga0066665_11240892All Organisms → cellular organisms → Bacteria570Open in IMG/M
3300006845|Ga0075421_102550446All Organisms → cellular organisms → Bacteria532Open in IMG/M
3300006854|Ga0075425_100353676All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales → Paenibacillaceae → Paenibacillus1691Open in IMG/M
3300006854|Ga0075425_101478764All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales767Open in IMG/M
3300006904|Ga0075424_101089232All Organisms → cellular organisms → Bacteria851Open in IMG/M
3300006918|Ga0079216_10841825All Organisms → cellular organisms → Bacteria681Open in IMG/M
3300007076|Ga0075435_100026249All Organisms → cellular organisms → Bacteria4543Open in IMG/M
3300007076|Ga0075435_100761317All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia842Open in IMG/M
3300007255|Ga0099791_10216633All Organisms → cellular organisms → Bacteria904Open in IMG/M
3300007255|Ga0099791_10626051All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium527Open in IMG/M
3300007258|Ga0099793_10095468All Organisms → cellular organisms → Bacteria1370Open in IMG/M
3300009038|Ga0099829_11391526All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium580Open in IMG/M
3300009137|Ga0066709_100119901All Organisms → cellular organisms → Bacteria3283Open in IMG/M
3300009137|Ga0066709_103302380All Organisms → cellular organisms → Bacteria587Open in IMG/M
3300009147|Ga0114129_12146217All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium673Open in IMG/M
3300009147|Ga0114129_12269656All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium652Open in IMG/M
3300009153|Ga0105094_10284338All Organisms → cellular organisms → Bacteria952Open in IMG/M
3300009153|Ga0105094_10385029All Organisms → cellular organisms → Bacteria812Open in IMG/M
3300009162|Ga0075423_10324920All Organisms → cellular organisms → Bacteria1613Open in IMG/M
3300009162|Ga0075423_11792027All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium662Open in IMG/M
3300009553|Ga0105249_13298577All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium519Open in IMG/M
3300009792|Ga0126374_11550149All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium545Open in IMG/M
3300009807|Ga0105061_1053712All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium622Open in IMG/M
3300010046|Ga0126384_11110647All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium725Open in IMG/M
3300010046|Ga0126384_11604512All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium613Open in IMG/M
3300010047|Ga0126382_10671126All Organisms → cellular organisms → Bacteria865Open in IMG/M
3300010048|Ga0126373_12315986All Organisms → cellular organisms → Bacteria597Open in IMG/M
3300010362|Ga0126377_11823468All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium684Open in IMG/M
3300010403|Ga0134123_10940075All Organisms → cellular organisms → Bacteria874Open in IMG/M
3300011439|Ga0137432_1238130All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium586Open in IMG/M
3300012199|Ga0137383_11315333All Organisms → cellular organisms → Bacteria515Open in IMG/M
3300012202|Ga0137363_11361988All Organisms → cellular organisms → Bacteria599Open in IMG/M
3300012355|Ga0137369_10041214All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes4129Open in IMG/M
3300012361|Ga0137360_11143755All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium673Open in IMG/M
3300012363|Ga0137390_10105317All Organisms → cellular organisms → Bacteria2789Open in IMG/M
3300012511|Ga0157332_1050015All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium597Open in IMG/M
3300012918|Ga0137396_11184172All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium540Open in IMG/M
3300012922|Ga0137394_11236182All Organisms → cellular organisms → Bacteria610Open in IMG/M
3300012923|Ga0137359_11532002All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium554Open in IMG/M
3300012925|Ga0137419_10056444All Organisms → cellular organisms → Bacteria2557Open in IMG/M
3300012930|Ga0137407_11114579All Organisms → cellular organisms → Bacteria748Open in IMG/M
3300012931|Ga0153915_13458851All Organisms → cellular organisms → Bacteria511Open in IMG/M
3300012944|Ga0137410_10065115All Organisms → cellular organisms → Bacteria2630Open in IMG/M
3300012948|Ga0126375_10533358All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium882Open in IMG/M
3300012957|Ga0164303_10329973All Organisms → cellular organisms → Bacteria913Open in IMG/M
3300012977|Ga0134087_10811015All Organisms → cellular organisms → Bacteria508Open in IMG/M
3300014154|Ga0134075_10460625All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium566Open in IMG/M
3300014326|Ga0157380_11835847All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium666Open in IMG/M
3300014885|Ga0180063_1163043All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium708Open in IMG/M
3300015053|Ga0137405_1229835All Organisms → cellular organisms → Bacteria535Open in IMG/M
3300015245|Ga0137409_10754561All Organisms → cellular organisms → Bacteria808Open in IMG/M
3300015254|Ga0180089_1021683All Organisms → cellular organisms → Bacteria1179Open in IMG/M
3300015374|Ga0132255_101399566All Organisms → cellular organisms → Bacteria1057Open in IMG/M
3300015374|Ga0132255_103094434All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium710Open in IMG/M
3300017936|Ga0187821_10160795All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium852Open in IMG/M
3300017993|Ga0187823_10222639All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium628Open in IMG/M
3300018028|Ga0184608_10219263All Organisms → cellular organisms → Bacteria835Open in IMG/M
3300018079|Ga0184627_10089017All Organisms → cellular organisms → Bacteria1624Open in IMG/M
3300018422|Ga0190265_11666703All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium748Open in IMG/M
3300018469|Ga0190270_13198114All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium519Open in IMG/M
3300019789|Ga0137408_1116033All Organisms → cellular organisms → Bacteria1513Open in IMG/M
3300020199|Ga0179592_10211642All Organisms → cellular organisms → Bacteria877Open in IMG/M
3300021086|Ga0179596_10494213All Organisms → cellular organisms → Bacteria620Open in IMG/M
3300021086|Ga0179596_10510053All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria610Open in IMG/M
3300021178|Ga0210408_10002876All Organisms → cellular organisms → Bacteria16324Open in IMG/M
3300022756|Ga0222622_10430136All Organisms → cellular organisms → Bacteria934Open in IMG/M
3300025164|Ga0209521_10376255All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium782Open in IMG/M
3300025916|Ga0207663_10649266All Organisms → cellular organisms → Bacteria833Open in IMG/M
3300025922|Ga0207646_10019533All Organisms → cellular organisms → Bacteria6295Open in IMG/M
3300025931|Ga0207644_10530551All Organisms → cellular organisms → Bacteria973Open in IMG/M
3300025931|Ga0207644_11396334All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium588Open in IMG/M
3300025940|Ga0207691_11424766All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium568Open in IMG/M
3300025941|Ga0207711_11123655All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium727Open in IMG/M
3300025942|Ga0207689_10184487All Organisms → cellular organisms → Bacteria1721Open in IMG/M
3300026035|Ga0207703_12295025All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium515Open in IMG/M
3300026095|Ga0207676_10929134All Organisms → cellular organisms → Bacteria854Open in IMG/M
3300026295|Ga0209234_1067188All Organisms → cellular organisms → Bacteria1364Open in IMG/M
3300026309|Ga0209055_1010905All Organisms → cellular organisms → Bacteria4782Open in IMG/M
3300026326|Ga0209801_1332968All Organisms → cellular organisms → Bacteria535Open in IMG/M
3300026342|Ga0209057_1051236All Organisms → cellular organisms → Bacteria1942Open in IMG/M
3300026446|Ga0257178_1006639All Organisms → cellular organisms → Bacteria1204Open in IMG/M
3300026498|Ga0257156_1013752All Organisms → cellular organisms → Bacteria1568Open in IMG/M
3300027036|Ga0207467_1004749All Organisms → cellular organisms → Bacteria959Open in IMG/M
3300027395|Ga0209996_1008924All Organisms → cellular organisms → Bacteria1317Open in IMG/M
3300027651|Ga0209217_1015275All Organisms → cellular organisms → Bacteria2496Open in IMG/M
3300027655|Ga0209388_1001230All Organisms → cellular organisms → Bacteria5944Open in IMG/M
3300027665|Ga0209983_1046362All Organisms → cellular organisms → Bacteria946Open in IMG/M
3300027765|Ga0209073_10306020All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium631Open in IMG/M
(restricted) 3300027799|Ga0233416_10028152All Organisms → cellular organisms → Bacteria1872Open in IMG/M
3300027821|Ga0209811_10148010All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium869Open in IMG/M
3300027846|Ga0209180_10290111All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium938Open in IMG/M
3300027862|Ga0209701_10359182All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium822Open in IMG/M
3300027909|Ga0209382_10869034All Organisms → cellular organisms → Bacteria953Open in IMG/M
3300028380|Ga0268265_11294826All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium729Open in IMG/M
3300028381|Ga0268264_10009570All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria8024Open in IMG/M
3300028381|Ga0268264_10708093All Organisms → cellular organisms → Bacteria1000Open in IMG/M
3300028381|Ga0268264_11521902All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium680Open in IMG/M
3300028796|Ga0307287_10120890All Organisms → cellular organisms → Bacteria992Open in IMG/M
3300028885|Ga0307304_10276166All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium737Open in IMG/M
3300030336|Ga0247826_10711740All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium780Open in IMG/M
3300030336|Ga0247826_11178795All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium614Open in IMG/M
3300030945|Ga0075373_10600509All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium505Open in IMG/M
3300031231|Ga0170824_121654867All Organisms → cellular organisms → Bacteria2486Open in IMG/M
3300031474|Ga0170818_112986293All Organisms → cellular organisms → Bacteria2472Open in IMG/M
3300031548|Ga0307408_100061109All Organisms → cellular organisms → Bacteria2749Open in IMG/M
3300031562|Ga0310886_10614849All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium668Open in IMG/M
3300031668|Ga0318542_10335843All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium776Open in IMG/M
3300031716|Ga0310813_11011649All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium758Open in IMG/M
3300031720|Ga0307469_10171568All Organisms → cellular organisms → Bacteria1655Open in IMG/M
3300031720|Ga0307469_10287615All Organisms → cellular organisms → Bacteria1346Open in IMG/M
3300031740|Ga0307468_102128132All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium541Open in IMG/M
3300031820|Ga0307473_10232563All Organisms → cellular organisms → Bacteria1117Open in IMG/M
3300031995|Ga0307409_102671327All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium528Open in IMG/M
3300032163|Ga0315281_11319555All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium715Open in IMG/M
3300032205|Ga0307472_100735179All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium892Open in IMG/M
3300033513|Ga0316628_102399946All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium697Open in IMG/M
3300033813|Ga0364928_0018390All Organisms → cellular organisms → Bacteria1378Open in IMG/M
3300034177|Ga0364932_0289454All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium619Open in IMG/M

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).


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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
Vadose Zone SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil15.69%
Corn, Switchgrass And Miscanthus RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere9.80%
Populus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere7.19%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Soil5.23%
Switchgrass RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere5.23%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil4.58%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil4.58%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil3.27%
Hardwood Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil3.27%
Grasslands SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil2.61%
SoilEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Soil1.96%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil1.96%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural → Soil1.96%
Switchgrass RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere1.96%
Freshwater SedimentEnvironmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment1.31%
SedimentEnvironmental → Aquatic → Freshwater → Lake → Sediment → Sediment1.31%
Freshwater SedimentEnvironmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment1.31%
Natural And Restored WetlandsEnvironmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands1.31%
Groundwater SedimentEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment1.31%
WatershedsEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds1.31%
Grasslands SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil1.31%
Switchgrass RhizosphereEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Switchgrass Rhizosphere1.31%
Agricultural SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil1.31%
Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil1.31%
SedimentEnvironmental → Terrestrial → Floodplain → Sediment → Unclassified → Sediment1.31%
Arabidopsis RhizosphereHost-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere1.31%
Arabidopsis Thaliana RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere1.31%
Miscanthus RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere1.31%
RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere1.31%
Switchgrass RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere1.31%
Freshwater WetlandsEnvironmental → Aquatic → Freshwater → Wetlands → Unclassified → Freshwater Wetlands0.65%
Groundwater SedimentEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment0.65%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil0.65%
Terrestrial SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil0.65%
Surface SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil0.65%
SoilEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Soil0.65%
Rice Paddy SoilEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Rice Paddy Soil0.65%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil0.65%
Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil0.65%
Corn RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere0.65%
Groundwater SandEnvironmental → Terrestrial → Soil → Sand → Unclassified → Groundwater Sand0.65%
Corn RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere0.65%
Tabebuia Heterophylla RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere0.65%
Switchgrass RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere0.65%
Miscanthus RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere0.65%

Visualization
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Associated Samples

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Taxon OIDSample NameHabitat TypeIMG/M Link
3300000956Soil microbial communities from Great Prairies - Kansas, Native Prairie soilEnvironmentalOpen in IMG/M
3300001915Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C7Host-AssociatedOpen in IMG/M
3300002886Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_20cmEnvironmentalOpen in IMG/M
3300004024Wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Browns_ThreeSqB_D2EnvironmentalOpen in IMG/M
3300004052Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - RushOxbow_ThreeSqC_D2EnvironmentalOpen in IMG/M
3300004114Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5EnvironmentalOpen in IMG/M
3300004156Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 1EnvironmentalOpen in IMG/M
3300005294Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 Bulk SoilEnvironmentalOpen in IMG/M
3300005355Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaGHost-AssociatedOpen in IMG/M
3300005437Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaGEnvironmentalOpen in IMG/M
3300005440Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaGEnvironmentalOpen in IMG/M
3300005441Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaGEnvironmentalOpen in IMG/M
3300005445Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaGEnvironmentalOpen in IMG/M
3300005446Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_135EnvironmentalOpen in IMG/M
3300005458Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaGEnvironmentalOpen in IMG/M
3300005459Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2Host-AssociatedOpen in IMG/M
3300005467Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaGEnvironmentalOpen in IMG/M
3300005468Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaGEnvironmentalOpen in IMG/M
3300005471Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaGEnvironmentalOpen in IMG/M
3300005536Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaGEnvironmentalOpen in IMG/M
3300005545Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-2 metaGEnvironmentalOpen in IMG/M
3300005546Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaGEnvironmentalOpen in IMG/M
3300005557Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_153EnvironmentalOpen in IMG/M
3300005617Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2Host-AssociatedOpen in IMG/M
3300005713Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)EnvironmentalOpen in IMG/M
3300005719Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2Host-AssociatedOpen in IMG/M
3300005895Rice paddy soil microbial communities from Twitchell Island, California, USA - SF_Rice_10C_0N_101EnvironmentalOpen in IMG/M
3300005937Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1Host-AssociatedOpen in IMG/M
3300006031Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Angelo_100EnvironmentalOpen in IMG/M
3300006050Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2014EnvironmentalOpen in IMG/M
3300006796Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114EnvironmentalOpen in IMG/M
3300006845Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5Host-AssociatedOpen in IMG/M
3300006854Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4Host-AssociatedOpen in IMG/M
3300006904Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD3Host-AssociatedOpen in IMG/M
3300006918Agricultural soil microbial communities from Utah to study Nitrogen management - NC AS100EnvironmentalOpen in IMG/M
3300007076Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4Host-AssociatedOpen in IMG/M
3300007255Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_1EnvironmentalOpen in IMG/M
3300007258Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_3EnvironmentalOpen in IMG/M
3300009038Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaGEnvironmentalOpen in IMG/M
3300009137Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158EnvironmentalOpen in IMG/M
3300009147Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)Host-AssociatedOpen in IMG/M
3300009153Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P8 Core (3) Depth 10-12cm March2015EnvironmentalOpen in IMG/M
3300009162Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2Host-AssociatedOpen in IMG/M
3300009553Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaGHost-AssociatedOpen in IMG/M
3300009792Tropical forest soil microbial communities from Panama - MetaG Plot_12EnvironmentalOpen in IMG/M
3300009807Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S3_0_10EnvironmentalOpen in IMG/M
3300010046Tropical forest soil microbial communities from Panama - MetaG Plot_36EnvironmentalOpen in IMG/M
3300010047Tropical forest soil microbial communities from Panama - MetaG Plot_30EnvironmentalOpen in IMG/M
3300010048Tropical forest soil microbial communities from Panama - MetaG Plot_11EnvironmentalOpen in IMG/M
3300010362Tropical forest soil microbial communities from Panama - MetaG Plot_22EnvironmentalOpen in IMG/M
3300010403Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-3EnvironmentalOpen in IMG/M
3300011439Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT820_2EnvironmentalOpen in IMG/M
3300012199Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_40_16 metaGEnvironmentalOpen in IMG/M
3300012202Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaGEnvironmentalOpen in IMG/M
3300012355Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_113_16 metaGEnvironmentalOpen in IMG/M
3300012361Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaGEnvironmentalOpen in IMG/M
3300012363Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4A metaGEnvironmentalOpen in IMG/M
3300012511Unplanted soil (control) microbial communities from North Carolina - M.Soil.8.old.080610_10EnvironmentalOpen in IMG/M
3300012918Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czcobulk3.16 metaGEnvironmentalOpen in IMG/M
3300012922Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk1.16 metaGEnvironmentalOpen in IMG/M
3300012923Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_40_16 metaGEnvironmentalOpen in IMG/M
3300012925Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300012930Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300012931Freshwater wetland microbial communities from Ohio, USA - Open water 3 Core 3 Depth 3 metaGEnvironmentalOpen in IMG/M
3300012944Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300012948Tropical forest soil microbial communities from Panama - MetaG Plot_14EnvironmentalOpen in IMG/M
3300012957Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_207_MGEnvironmentalOpen in IMG/M
3300012977Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_20cm_5_24_1 metaGEnvironmentalOpen in IMG/M
3300014154Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_09212015EnvironmentalOpen in IMG/M
3300014326Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaGHost-AssociatedOpen in IMG/M
3300014885Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLIBT47_16_10DEnvironmentalOpen in IMG/M
3300015053Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (PacBio error correction)EnvironmentalOpen in IMG/M
3300015245Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Hybrid Assembly)EnvironmentalOpen in IMG/M
3300015254Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLT860_16_10DEnvironmentalOpen in IMG/M
3300015374Col-0 rhizosphere combined assemblyHost-AssociatedOpen in IMG/M
3300017936Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SourceSoil_1EnvironmentalOpen in IMG/M
3300017993Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SourceSoil_3EnvironmentalOpen in IMG/M
3300018028Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_30_coexEnvironmentalOpen in IMG/M
3300018079Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_127_b1EnvironmentalOpen in IMG/M
3300018422Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 124 TEnvironmentalOpen in IMG/M
3300018469Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 320 TEnvironmentalOpen in IMG/M
3300019789Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (PacBio error correction)EnvironmentalOpen in IMG/M
3300020199Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300021086Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_1_08_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300021178Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-MEnvironmentalOpen in IMG/M
3300022756Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_5_b1EnvironmentalOpen in IMG/M
3300025164Soil microbial communities from Rifle, Colorado, USA - sediment 19ft 4EnvironmentalOpen in IMG/M
3300025916Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025922Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025931Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025940Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025941Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025942Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300026035Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300026095Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300026295Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 08_20_2013_1_20cm (SPAdes)EnvironmentalOpen in IMG/M
3300026309Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_110 (SPAdes)EnvironmentalOpen in IMG/M
3300026326Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_127 (SPAdes)EnvironmentalOpen in IMG/M
3300026342Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_146 (SPAdes)EnvironmentalOpen in IMG/M
3300026446Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NL-11-BEnvironmentalOpen in IMG/M
3300026498Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NI-49-AEnvironmentalOpen in IMG/M
3300027036Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G07A5-10 (SPAdes)EnvironmentalOpen in IMG/M
3300027395Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M2 PM (SPAdes)Host-AssociatedOpen in IMG/M
3300027651Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM3H0_M2 (SPAdes)EnvironmentalOpen in IMG/M
3300027655Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_1 (SPAdes)EnvironmentalOpen in IMG/M
3300027665Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M1 S PM (SPAdes)Host-AssociatedOpen in IMG/M
3300027765Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100 (SPAdes)EnvironmentalOpen in IMG/M
3300027799 (restricted)Sediment microbial communities from Lake Towuti, South Sulawesi, Indonesia - Sediment_Towuti_2014_0_MGEnvironmentalOpen in IMG/M
3300027821Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire. - Coalmine Soil_Cen17_06102014_R1 (SPAdes)EnvironmentalOpen in IMG/M
3300027846Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300027862Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300027909Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5 (SPAdes)Host-AssociatedOpen in IMG/M
3300028380Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300028381Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300028796Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_141EnvironmentalOpen in IMG/M
3300028885Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_185EnvironmentalOpen in IMG/M
3300030336Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day1EnvironmentalOpen in IMG/M
3300030945Forest soil microbial communities from France for metatranscriptomics studies - Site 11 - Champenoux / Amance forest - FA10 EcM (Eukaryote Community Metatranscriptome)EnvironmentalOpen in IMG/M
3300031231Coassembly Site 11 (all samples) - Champenoux / Amance forestEnvironmentalOpen in IMG/M
3300031474Fir Coassembly Site 11 - Champenoux / Amance forestEnvironmentalOpen in IMG/M
3300031548Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3Host-AssociatedOpen in IMG/M
3300031562Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D3EnvironmentalOpen in IMG/M
3300031668Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f23EnvironmentalOpen in IMG/M
3300031716Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - YN3EnvironmentalOpen in IMG/M
3300031720Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515EnvironmentalOpen in IMG/M
3300031740Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05EnvironmentalOpen in IMG/M
3300031820Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_515EnvironmentalOpen in IMG/M
3300031995Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2Host-AssociatedOpen in IMG/M
3300032163Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G07_0EnvironmentalOpen in IMG/M
3300032205Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05EnvironmentalOpen in IMG/M
3300033513Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_M2_C1_D5_CEnvironmentalOpen in IMG/M
3300033813Sediment microbial communities from East River floodplain, Colorado, United States - 30_j17EnvironmentalOpen in IMG/M
3300034177Sediment microbial communities from East River floodplain, Colorado, United States - 17_j17EnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID Sample Taxon ID Habitat Sequence
JGI10216J12902_10764578713300000956SoilMRALKILTAVGLVVFLLVILVPFWWIASMSFKTYEQIQFATSIYVP
JGI24741J21665_100984613300001915Corn RhizosphereVTIKTLTWLGLALFLLVILVPFWWIASMSFKTYEQIQFATSIYVPSPFTWEN
JGI25612J43240_100337633300002886Grasslands SoilLKALTWCGMALFLLVILVPFWWIASMSFKTYEQIQFATSIYV
Ga0055436_1028296113300004024Natural And Restored WetlandsMKAWTALSVAGLAAFVLVILVPFWWIASMSFKTYEQIQFAVSIYVPRPFTWENYT
Ga0055490_1005637133300004052Natural And Restored WetlandsMRPLKALTLCGMAIFLLVILVPFWWIASMSFKTYEQIQFATSIYLPSPFTWENYTGLWTETR
Ga0062593_10017348213300004114SoilVTIKTLTWLGLALFLLVILVPFWWIASMSFKTYEQIQFATSIYVP
Ga0062589_10013122013300004156SoilVTIKTLTWLGLALFLLVILVPFWWIASMSFKTYEQIQFATSIYVPS
Ga0065705_1032669013300005294Switchgrass RhizosphereMRALRILTAVGLVVFLLVILVPFWWIASMSFKTYEQIQFATSIYV
Ga0065705_1113156713300005294Switchgrass RhizosphereMPVSLKALTWAGMALFLLVILVPFWWIASMSFKTYEQIQFATSIYVP
Ga0070671_10015947533300005355Switchgrass RhizosphereVTIKTLTWLGLALFLLVILVPFWWIASMSFKTYEQIQFATSIYVPK
Ga0070710_1004372013300005437Corn, Switchgrass And Miscanthus RhizosphereMTAKALTWFGMAVFLLVILVPFWWIASMSFKTYEQIQFATSIYVPNPFTWENYTG
Ga0070705_10063677323300005440Corn, Switchgrass And Miscanthus RhizosphereLKALTWLGMAIFLLVILVPFWWIASMSFKTYEQIQFATSIYVPNPFT
Ga0070700_10140822013300005441Corn, Switchgrass And Miscanthus RhizosphereMRALKILTAVGLVVFLLVILVPFWWIASMSFKTYEQIQFATSIYVPK
Ga0070708_10032323933300005445Corn, Switchgrass And Miscanthus RhizosphereVTTKALTLAGLAIFLLVILVPFWWIASMSFKTYEQIQFATSIYVPNPFTWENYTG
Ga0066686_1045172723300005446SoilMSWRIASVGGLVTFALIVLVPFWWITSMSFKTYEQIQFATSIYVPKPFTWENYT
Ga0070681_1135158813300005458Corn RhizosphereMRFPLKALTWGGMTVFLLVILVPFWWIASMSFKTYEQIQFATSI
Ga0068867_10018257013300005459Miscanthus RhizosphereMPVSLKALTWAGMALFLLVILVPFWWIASMSFKTYEQIQFATSIY
Ga0070706_10067153923300005467Corn, Switchgrass And Miscanthus RhizosphereVTTKALTLAGLAIFLLVILVPFWWIASMSFKTYEQIQFATSIYVPNPFTWENYTGLW
Ga0070707_10080038813300005468Corn, Switchgrass And Miscanthus RhizosphereVTTKALTLAGLAIFLLVILVPFWWIASMSFKTYEQIQFATSIYVPNPF
Ga0070707_10192584913300005468Corn, Switchgrass And Miscanthus RhizosphereMALFLLVILVPFWWIASMSFKTYEQIQFATSIYVPNPFTWENYTGLWT
Ga0070698_10066552313300005471Corn, Switchgrass And Miscanthus RhizosphereMRALKILTAVGLVVFLLVILVPFWWIASMSFKTYEQIQFATSIYV
Ga0070697_10066701113300005536Corn, Switchgrass And Miscanthus RhizosphereVTTRALTLAGLALFLLVILVPFWWIASMSFKTYEQIQFATSIYVPNPFTWENYTG
Ga0070697_10200130623300005536Corn, Switchgrass And Miscanthus RhizosphereMRALKILTGVGLVVFLLVILVPFWWIASMSFKTYEQIQFATSIYVPKPFTWENYSGLWSETRFP
Ga0070695_10052198523300005545Corn, Switchgrass And Miscanthus RhizosphereLKALTWCGMAMFLLVILVPFWWIASMSFKTYEQIQFATSIYVPNPFTWENYTGLWT
Ga0070695_10099513513300005545Corn, Switchgrass And Miscanthus RhizosphereMTATARALTIAGIVVFLLIVLVPFWWIASMSFKTYEQVQFATSIYVPRPF
Ga0070696_10060167823300005546Corn, Switchgrass And Miscanthus RhizosphereVPTKALTLAGLALFLLVILIPFWWIASMSFKTYEQIQFATSIYVPKPF
Ga0066704_1045221913300005557SoilMKPWKVATVLGLAAFVLIVLVPFWWIATMSFKTYEQIQFAQSIYVPRPFTWENYTSLWLE
Ga0068859_10048718233300005617Switchgrass RhizosphereMRALKILTAVGLVVFLLVILVPFWWIASMSFKTYEQIQFATSIYVPKPFTW
Ga0066905_10172008213300005713Tropical Forest SoilMTGWRIASVGGLVLFALIVLVPFWWITSMSFKTYEQIQFAISIYVPKPFTWENYTGLWLDTR
Ga0068861_10040796013300005719Switchgrass RhizosphereMRALRILTAVGLVVFLLVILVPFWWIASMSFKTYEQIQFATSIY
Ga0075277_105312923300005895Rice Paddy SoilMTAKALTALGMLVFLLVILVPFWWIASMSFKTYEQIQFATSIYRCWW
Ga0081455_1024270733300005937Tabebuia Heterophylla RhizosphereMRPSLKFVTAIGMLLFLLVILVPFWWIASMSFKTYEQIQFATSIYVPNPFTWENYTGLW
Ga0066651_1003948233300006031SoilMTARAFTIIGLVAFLLIVLVPFWWIASMSFKTYEQVQFATSIYVPRPF
Ga0075028_10023990123300006050WatershedsLKALTWCGMAIFLLVILVPFWWIASMSFKTYEQIQFATSIYVPNPF
Ga0075028_10043556913300006050WatershedsVTTKALTLAGLALFLLVILVPFWWIASMSFKTYEQIQFATSIYVPNPFTWENYTGLW
Ga0066665_1124089213300006796SoilVRAWKVATVVGLAAFALLVLVPFWWIASMSFKTYEQIQFAQSIYVPRPFTWENY
Ga0075421_10255044613300006845Populus RhizosphereVKAGKAATIVGLVAFGLVVLVPFWWIASMSFKTYEQIQFATSIYVPRPFTWENYTGLWLD
Ga0075425_10035367613300006854Populus RhizosphereMAVFLLVILVPFWWIASMSFKTYEQIQFATSIYVPNPFTWENYTGLWTETR
Ga0075425_10147876423300006854Populus RhizosphereVTKALTWCGMAIFLLVILVPFWWIASMSFKTYEQIQFATSIYVPNPFTWENYTGLWTETR
Ga0075424_10108923223300006904Populus RhizosphereMAIFLLVILVPFWWIASMSFKTYEQIQFATSIYVPNPFTWENYTGLWTETR
Ga0079216_1084182513300006918Agricultural SoilMRALKILTAVGLVVFLLVILVPFWWIASMSFKTYEQIQFA
Ga0075435_10002624913300007076Populus RhizosphereMTRALTWIGLVFFLLLILVPFWWIASMSFKTYEQIQFAQ
Ga0075435_10076131723300007076Populus RhizosphereMAVFLLVILVPFWWIASMSFKTYEQIQFATSIYVPNPFTWENYTGLWT
Ga0099791_1021663313300007255Vadose Zone SoilMSAAARAFTIAGIGAFLLIVLVPFWWIASMSFKTYEQIQFATSIYVPKPFTWENYT
Ga0099791_1062605113300007255Vadose Zone SoilMKALTWLGMALFLLIILVPFWWIASMSFKTYEQIQF
Ga0099793_1009546813300007258Vadose Zone SoilMSPTARVFTVAGIVLFLLIVLVPFWWIASMSFKTYEQIQFATSIYVPKPFIWDNYTLLWTAT
Ga0099829_1139152623300009038Vadose Zone SoilMRAGRVVTLIGLFGFMLVVLVPFWWIASMSVKTYEQIQFATSIYVPNPFTW
Ga0066709_10011990113300009137Grasslands SoilMTVRAFTIIGLVAFLLIVLVPFWWIASMSFKTYEQVQFATSIYVPRPFTWENYTVLWSA
Ga0066709_10330238023300009137Grasslands SoilMNPMITARVFTLAGIVLFLLIVLVPFWWIASMSFKTYEQIQFATSIYVPKPFIWDNY
Ga0114129_1214621713300009147Populus RhizosphereMKPWKAATVVGLAAFALLVLVPFWWIASMSFKTYEQIQFAQSIYVPRPFT
Ga0114129_1226965623300009147Populus RhizosphereMTRALTIAGLVLFLLVILVPFWWIASMSFKTYEQIQFASSIYVPKPFTWENYA
Ga0105094_1028433813300009153Freshwater SedimentMRALKILTAVGLVVFLLIILVPFWWIASMSFKTYEQIQFATSIYVPQPFTWENYSGLW
Ga0105094_1038502913300009153Freshwater SedimentMHLPLRTLTWLGMGLFLLVILVPFWWIASMSFKTYEQIQFATSIYVPKPFTWENYSGLWT
Ga0075423_1032492033300009162Populus RhizosphereMTRALTWIGLAVFLLLILVPFWWIASMSFKTYEQIQFAVSIYV
Ga0075423_1179202723300009162Populus RhizosphereMRPSLKAIMWLGLGAFLLVILVPFWWITSMSFKTYEQIQFATSIYVPN
Ga0105249_1329857713300009553Switchgrass RhizosphereMRALRILTAVGLVVFLLVILVPFWWIASMSFKTYEQIQFATSIYVPKPFTWENYSGLW
Ga0126374_1155014913300009792Tropical Forest SoilMKPWKVATLVGLAAFGLLVLVPFWWIASMSFKTYEQIQFATSIYVPSPFTWVNY
Ga0105061_105371223300009807Groundwater SandVTGVTRAAKTFTLIGLLAFVLAVLVPFWWIASMSFKTYEQIQFATSIYVPKPFTWEN
Ga0126384_1111064723300010046Tropical Forest SoilMRPSLRLATAAGMLVFLLIVLVPFWWIASMSFKTYEQIQFAQSIYVPRPFTWENY
Ga0126384_1160451223300010046Tropical Forest SoilVLGLAAFGLLVLVPFWWIASMSFKTYEQIQFAQSIYVPRPFTWENYTGLWLETRFPL
Ga0126382_1067112613300010047Tropical Forest SoilMTRLLIVVGLGLFLLLILVPFWWIASMSFKTYEQVQFATSIYVPRPF
Ga0126373_1231598623300010048Tropical Forest SoilMTPVARALTIAGIVVFLLIVLVPFWWIASMSFKTYEQVQFATSIYVPRPFTWENYTV
Ga0126377_1182346813300010362Tropical Forest SoilMRSGRALTVGGLVIFSLVVLVPFWWIASMSCKTYEQIQFATSIYVPRPFTWQN
Ga0134123_1094007513300010403Terrestrial SoilMRALKILTAVGLVVFLLVILVPFWWIASMPFKTYEQIQFATSIYVPKPFTW
Ga0137432_123813023300011439SoilMRALKILTAVGLVVFLLVVLVPFWWIGSMSFWAFEQIQFATS
Ga0137383_1131533313300012199Vadose Zone SoilMSARVLTIAGIGAFLLIVLVPFWWIASMSFKTYEQIQFATSIYVPKPF
Ga0137363_1136198813300012202Vadose Zone SoilMAIFLLVILVPFWWIASMSFKTYEQIQFATSIYVPNPFTWENYTGLWTETRF
Ga0137369_1004121453300012355Vadose Zone SoilMRAWKAVSIAGLVAFVLIILVPFWWIASMSFKTYEQIQFATSIYVPRPFTW
Ga0137360_1114375523300012361Vadose Zone SoilMRGALTVAGLVLFLLVVLVPFWWIASMSFKTYEQVQFATSIYVPRPFTWE
Ga0137390_1010531713300012363Vadose Zone SoilVTTKALTLAGLAIFLLVILVPFWWIASMSFKTYEQIQFATSIYVPNPFTWENYTGLWT
Ga0157332_105001513300012511SoilMTRVLTWLGLVVFLLLILVPFWWIASMSFKTYEQIQFAVSIYVPHPFTWENYT
Ga0137396_1118417223300012918Vadose Zone SoilMAVFLLVILVPFWWIASMSFKTYEQIQFATSIYVP
Ga0137394_1123618213300012922Vadose Zone SoilMSPTARVFTVAGIVLFLLIVLVPFWWIASMSFKTYEQIQFATSIYVPKPFIWDNYTLLWT
Ga0137359_1153200223300012923Vadose Zone SoilVTTKALTLAGLAIFLLVILVPFWWIASMSFKTYEQIQFATSIYVPNPFTWENY
Ga0137419_1005644433300012925Vadose Zone SoilMVLFLLIILVPFWWIASMSFKTYEQIQFATSIYVPK
Ga0137407_1111457923300012930Vadose Zone SoilMAARVFTLAGIVFFLLIVLVPFWWIASMSFKTYEQIQFATSIYVPKPFVW
Ga0153915_1345885123300012931Freshwater WetlandsLKALTWCGLALFLLVVLIPFWWIASMSFKTYEQIQFATSIYVPNPFTWENYTGLWT
Ga0137410_1006511533300012944Vadose Zone SoilMKPWKVATVLGLAVFVMIVLVPFWWIATMSFKTYEQIQFAQSIYVPRPFTWENY
Ga0126375_1053335813300012948Tropical Forest SoilMKPWKAATLLGLAAFGLVVLVPFWWIASMSFKTYEQIQFAQSIYVPRPFIWDNYTGLWLETR
Ga0164303_1032997313300012957SoilMAIFLLVILVPFWWIASMSFKTYEQIQFATSIYVPNPFTWENYTGLWTETRFPLWL
Ga0134087_1081101513300012977Grasslands SoilMNTMTARVFTLAGIVLFLLIVLVPFWWIASMSFKTYEQIQFATSIYVPKPFIWDNYTL
Ga0134075_1046062513300014154Grasslands SoilMKPWKVATVLGLAAFVLIVLVPFWWIATMSFKTYEQIQFAQSIYVPRPFTWENYTSL
Ga0157380_1183584723300014326Switchgrass RhizosphereMPVSLKALTWAGMALFLLVILVPFWWIASMSFKTYEQIQFATSIYVPKPFTWE
Ga0180063_116304313300014885SoilMLLFLLVILVPFWWIASMSFKTYEQIQFATSIYFPNPFTWENYT
Ga0137405_122983513300015053Vadose Zone SoilMNTMTARVFTLAGIVLFLLIVLVPFWWIASMSFKTYEQIQFATSIYVPKPFIWDNY
Ga0137409_1075456123300015245Vadose Zone SoilVTVPWAKTLTIVGLAAFLLVVLVPFWWIASMSFKTYEQIQFAVSIYVPKPFTWDNYQAL
Ga0180089_102168333300015254SoilMRPSLKALTWLGMGLFLLIILVPFWWIASMSFKTYEQIQFATSIYVPN
Ga0132255_10139956623300015374Arabidopsis RhizosphereMALRKPSGMGRGLAVGGLVAFVLIVLVPFWWIANMSFKTYEQVQFATSIYVPHPLT*
Ga0132255_10309443413300015374Arabidopsis RhizosphereVKTWKIATVLGLTAFTLIVLVPFWWIATMSFKTYEQIQFAQSIYVPRPFTWEN
Ga0187821_1016079523300017936Freshwater SedimentLKALTLAGLALFLLVILVPFWWIASMSFKTYEQIQFATSIYVPNPFTWENY
Ga0187823_1022263913300017993Freshwater SedimentMAIFLLIVLVPFWWIASMSFKTYEQIQFATSIYVPNPFTWENYTG
Ga0184608_1021926323300018028Groundwater SedimentMRALKILTAVGLVVFLLVILVPFWWIASMSFKTYEQIQFATSIYVPNPFTWENYTGL
Ga0184627_1008901733300018079Groundwater SedimentMPASLKAITWLGMGLFLLIILVPFWWIASMSFKTYEQIQFATSIYVP
Ga0190265_1166670313300018422SoilMRVLGILTAIGMVVFLLVILVPFWWIASMSFKTYEQIQFATSIYVPNPFTWENYTGLWSETRFPL
Ga0190270_1319811423300018469SoilMTRALTIAGLVLFLLVILVPFWWIASMSSKTYEQIQFATSIYVPKPFTW
Ga0137408_111603343300019789Vadose Zone SoilMNPWKAATVVGLAGFALLVLVPFWWIASMSFKTYEQIQFAQSIYVPRPFTWE
Ga0179592_1021164213300020199Vadose Zone SoilMSARVFTVAGIGLFLLIVLVPFWWIASMSFKTYEQIQFATSIYVPKPFIWDNYTLLWTAT
Ga0179596_1049421323300021086Vadose Zone SoilVTTKALTLAGLAIFLLVILVPFWWIASMSFKTYEQIQFATSIYVPNPFTWENYTGLWTE
Ga0179596_1051005313300021086Vadose Zone SoilMAVFLLVILVPFWWIASMSFKTYEQIQFATSIYVPNPF
Ga0210408_1000287613300021178SoilMTTKALTWFGMAVFLLVILVPFWWIASMSFKTYEQIQFATSIYVPNPFT
Ga0222622_1043013613300022756Groundwater SedimentLKALTWLGMALFLLIILVPFWWIASMSFKTYEQIQFATSIYV
Ga0209521_1037625523300025164SoilMAPWKALTVVGLGAFVLIVLVPFWWIASMSFKTYEQIQFAVSIYVPRPFTWENYTGLW
Ga0207663_1064926623300025916Corn, Switchgrass And Miscanthus RhizosphereVTKALTWLGMALFLLVILVPFWWIASMSFKTYEQIQFATSIYVPKPFTWENYSGL
Ga0207646_1001953313300025922Corn, Switchgrass And Miscanthus RhizosphereVPWAKTLTLVGLAAFLLVVLVPFWWIASMSFKTYEQIQFAVSIYVPKPFTWDNYQALWTS
Ga0207644_1053055123300025931Switchgrass RhizosphereVTIKTLTWLGLALFLLVILVPFWWIASMSFKTYEQIQFATSIY
Ga0207644_1139633423300025931Switchgrass RhizosphereVRPSLKATTWLGLGVFLLVILVPFWWITSMSFKTYEQIQFATSI
Ga0207691_1142476613300025940Miscanthus RhizosphereVKGWKAATIVGLVGFGLVVLVPFWWIASMSFKTYEQIQFATSIYVPRPF
Ga0207711_1112365513300025941Switchgrass RhizosphereMRPSLKATTWLGLGVFLLVILVPFWWITSMSFKTYEQIQFATSIYVPNPFTWENYRGLW
Ga0207689_1018448713300025942Miscanthus RhizosphereMPVSLKALTWAGMALFLLVILVPFWWIASMSFKTYEQIQFATSIYVSTPFTW
Ga0207703_1229502513300026035Switchgrass RhizosphereVTIKTLTWLGLALFLLVILVPFWWIASMSFKTYEQIQFATSIYVPSPF
Ga0207676_1092913413300026095Switchgrass RhizosphereVTIKTLTWLGLALFLLVILVPFWWIASMSFKTYEQIQFATSTYVPK
Ga0209234_106718833300026295Grasslands SoilMTARAFTIIGLVAFLLIVLVPFWWIASMSFKTYEQVQFATSIYVPRPFTWENY
Ga0209055_101090553300026309SoilVKPWKVATVLGLAAFALVVLVPFWWIATMSFKTYEQIQFAQSIYVPRPFTWENYT
Ga0209801_133296823300026326SoilMAARVLTLAGIVLFLLIVLVPFWWIASMSFKTYEQIQFATSIYVPKPFVWDNYTLLWTATRFPL
Ga0209057_105123633300026342SoilMTTRAFTIIGLVAFLLIVLVPFWWIASMSFKTYEQVQFATSIYVPRPFT
Ga0257178_100663913300026446SoilMAIFLLVILVPFWWIASMSFKTYEQIQFATSIYVPNPFTWENYTGL
Ga0257156_101375233300026498SoilMAVFLLVILVPFWWIASMSFKTYEQIQFATSIYVPNPFTWENYTGL
Ga0207467_100474913300027036SoilMTRALTIAGLVLFLLVILVPFWWIASMSFKTYEQIQFASSIYVPRPFTWENYTGL
Ga0209996_100892413300027395Arabidopsis Thaliana RhizosphereMTRALTIAGLVLFLLVILVPFWWIASMSFKTYEQIQFATSIYVPRPFT
Ga0209217_101527533300027651Forest SoilMAVFLLVILVPFWWIASMSFKTYEQIQFATSIYVPNPFTWENYTGLW
Ga0209388_100123013300027655Vadose Zone SoilMAVFLLVILVPFWWIASMSFKTYEQIQFATSIYVPNPFTWENYTGLWTE
Ga0209983_104636223300027665Arabidopsis Thaliana RhizosphereVTIKTLTWLGLALFLLVILVPFWWIASMSFKTYEQIQFATSIYV
Ga0209073_1030602013300027765Agricultural SoilMAIFLLIVLVPFWWIASMSFKTYEQIQFATSIYVPNPFTWENYSGLWTETRFP
(restricted) Ga0233416_1002815233300027799SedimentMRAAPRIATAAGMVLFLLVILVPFWWIASMSFKTYEQIQFATRIYVPSPFTWENYTGLWTDTRFPL
Ga0209811_1014801013300027821Surface SoilMRPSLKATTWLGLGVFLLVILVPFWWITSMSFKTYEQIQFATSIYVPNPFTWENYRGLWT
Ga0209180_1029011113300027846Vadose Zone SoilMRAGRVVTLIGLFGFMLVVLVPFWWIASMSVKTYEQIQFATSIYVPKPFT
Ga0209701_1035918213300027862Vadose Zone SoilMHPSLKLATAAGLLLFLLVILVPFWWIASMSFKTYEQIQFATSIYVPNPFTWENYTGLWIDTR
Ga0209382_1086903413300027909Populus RhizosphereMRPLKALTLCGMAIFLLIILVPFWWIASMSFKTYEQIQFATSIYVPNPFTWENYTGLWTE
Ga0268265_1129482623300028380Switchgrass RhizosphereMKGGKALTVLGLAVFGLLVLVPFWWIASMSFKTYEQIQFAQSIYVPRPFVWDNYTSLW
Ga0268264_1000957013300028381Switchgrass RhizosphereVTIKTLTWLGLALFLLVILVPFWWIASMSFKTYEQIQFATS
Ga0268264_1070809323300028381Switchgrass RhizosphereMPVSLKALTWAGMALFLLVILVPFWWIASMSFKTYEQIQFATSIYVPKPFTWENYTGLWTETRFPIW
Ga0268264_1152190213300028381Switchgrass RhizosphereVTRGAKVATIAGLIVFAIVVLVPFWWIASMSFKTYEQIQFATSIYVPSPFTWVNY
Ga0307287_1012089013300028796SoilLKALTWLGMALFLLIILVPFWWIASMSFKTYEQIQFATSIYVPNPF
Ga0307304_1027616613300028885SoilMAVFLLVILVPFWWIASMSFKTYEQIQFATSIYVPNPFTWENYTGLWTETRFPTWLR
Ga0247826_1071174013300030336SoilVTIKTLTWLGLALFLLVILVPFWWIASMSFKTYEQIQFATSIYVPSPFTWENYTGLW
Ga0247826_1117879513300030336SoilVKAWKVATIAGLVVLGLVVLVPFWWIATMSFKTYEQIQFAQSIYVPRPFTWENYT
Ga0075373_1060050913300030945SoilMRPSLKVITWLGLGVFLLVILVPFWWITSMSFKTYEQIQFATSIYVPNPFTWENYRGLW
Ga0170824_12165486733300031231Forest SoilMRPSPKATTWFGLGVFLLVILVPFWWITSMSFKTYEQIQFATSIYVPNPFTWENYR
Ga0170818_11298629313300031474Forest SoilMRPSPKATTWFGLGVFLLVILVPFWWITSMSFKTYEQIQFATSI
Ga0307408_10006110913300031548RhizosphereMKPWKLATMIGLGAFGLVVVVPFWWIANMSFKTYEQIQFAQSIYMPQPFTWDNYTGLWLETRFPLWFRN
Ga0310886_1061484913300031562SoilVKGWKAATIVGLVGFGLVVLVPFWWIASMSFKTYEQIQFATSIYMPNPFTWENYT
Ga0318542_1033584313300031668SoilVKPWKVATVLGLAVFALIVLVPFWWIATMSFKTYEQIQFAQSIYVPRPFTW
Ga0310813_1101164923300031716SoilMVLRKPSGMGRGLAVGGLVAFVLIVLVPFWWIANMSFKTYEQVQFATSIYVPHPFTWENYTGLWRG
Ga0307469_1017156813300031720Hardwood Forest SoilMRPSLKAATVAGMLLFLLIILVPFWWIASMSFKTYEQIQFATSIYVPNP
Ga0307469_1028761513300031720Hardwood Forest SoilMAMFLLVILVPFWWIASMSFKTYEQIQFATSIYVPNPFTWENYTG
Ga0307468_10212813223300031740Hardwood Forest SoilMTRALTWIGLVLFLLLILVPFWWIASMSFKTYEQIQFAT
Ga0307473_1023256323300031820Hardwood Forest SoilVLPLKALTLLGLLLFLLVILVPFWWIASMSFKTYEQIQFATSIYVPKPFTWE
Ga0307409_10267132713300031995RhizosphereVTRAATAWALAGLIAFLLVVLVPFWWIASMSFKTYEQIQFAQSIYVPRPFTWENYTGLWFET
Ga0315281_1131955523300032163SedimentMRAWKALSVVGLVAFVLVILVPFWWIASMSFKTYEQIQFATSIYVPRPFTG
Ga0307472_10073517923300032205Hardwood Forest SoilMAIFLLVILVPFWWIASMSFKTYEQIQFATSIYVPNPFTWENYTGLWTE
Ga0316628_10239994613300033513SoilMHLPLKALTWFGMGLFLVVILVPFWWIASMSFKTYEQIQFATSIYFPNPFTWENYSG
Ga0364928_0018390_1208_13783300033813SedimentMPASLKALTWAGMAIFLLIILVPFWWIASMSFKTYEQIQFATSIYVPNPFTWENYTG
Ga0364932_0289454_475_6183300034177SedimentMRPSLKALTLFGMAVFLLIILVPFWWIASMSFKTYEQIQFATSIYVPK

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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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