Sample 3300001915

3300001915: Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C7

Overview

Basic Information
IMG/M Taxon OID	3300001915 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0090294 \| Gp0056914 \| Ga0005028
Sample Name	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C7
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	220220936
Sequencing Scaffolds	65
Novel Protein Genes	71
Associated Families	67

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Rhodanobacteraceae → Rudaea → Rudaea cellulosilytica	2
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	2
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2
Not Available	22
All Organisms → cellular organisms → Bacteria	5
All Organisms → cellular organisms → Bacteria → Proteobacteria	2
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → unclassified Sphingomonas → Sphingomonas sp. URHD0007	2
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Deuterostomia → Chordata → Craniata → Vertebrata → Gnathostomata → Chondrichthyes → Elasmobranchii → Selachii → Galeomorphii → Galeoidea → Orectolobiformes → Hemiscylliidae → Chiloscyllium → Chiloscyllium punctatum	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	7
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → environmental samples → uncultured Corynebacteriales bacterium	2
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. STM 3843	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → Sphingomonas sediminicola	3
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium	1
All Organisms → cellular organisms → Bacteria → Acidobacteria	3
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → Sphingomonas segetis	2
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	1
All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa
Type	Host-Associated
Taxonomy	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	Unclassified
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere

Location Information
Location	Kellogg Biological Station, Michigan, USA
Coordinates	Lat. (^o)	42.3948	Long. (^o)	-85.3738	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000036	Metagenome / Metatranscriptome	4352	Y
F000262	Metagenome / Metatranscriptome	1428	Y
F002154	Metagenome / Metatranscriptome	589	Y
F002217	Metagenome / Metatranscriptome	582	Y
F004350	Metagenome / Metatranscriptome	442	Y
F006872	Metagenome / Metatranscriptome	363	Y
F009846	Metagenome / Metatranscriptome	312	Y
F012520	Metagenome / Metatranscriptome	280	N
F012999	Metagenome / Metatranscriptome	275	Y
F013019	Metagenome / Metatranscriptome	275	Y
F017026	Metagenome / Metatranscriptome	243	Y
F017168	Metagenome / Metatranscriptome	242	Y
F017759	Metagenome	239	N
F018388	Metagenome / Metatranscriptome	235	Y
F019220	Metagenome	231	Y
F019338	Metagenome / Metatranscriptome	230	Y
F019547	Metagenome	229	Y
F019688	Metagenome	228	Y
F019847	Metagenome / Metatranscriptome	227	Y
F020078	Metagenome / Metatranscriptome	226	Y
F020237	Metagenome / Metatranscriptome	225	Y
F025759	Metagenome	200	Y
F026523	Metagenome / Metatranscriptome	197	Y
F031590	Metagenome / Metatranscriptome	182	Y
F031629	Metagenome / Metatranscriptome	182	N
F032686	Metagenome	179	Y
F033870	Metagenome / Metatranscriptome	176	Y
F034283	Metagenome / Metatranscriptome	175	Y
F034564	Metagenome / Metatranscriptome	174	Y
F037384	Metagenome / Metatranscriptome	168	Y
F041998	Metagenome / Metatranscriptome	159	Y
F045003	Metagenome / Metatranscriptome	153	Y
F046510	Metagenome / Metatranscriptome	151	Y
F048455	Metagenome	148	Y
F049708	Metagenome / Metatranscriptome	146	Y
F052832	Metagenome	142	N
F055629	Metagenome / Metatranscriptome	138	Y
F057403	Metagenome	136	Y
F057494	Metagenome / Metatranscriptome	136	N
F057608	Metagenome	136	N
F058774	Metagenome / Metatranscriptome	134	Y
F060260	Metagenome / Metatranscriptome	133	Y
F061753	Metagenome	131	Y
F062121	Metagenome / Metatranscriptome	131	N
F063910	Metagenome / Metatranscriptome	129	N
F064047	Metagenome / Metatranscriptome	129	Y
F064503	Metagenome	128	Y
F064778	Metagenome / Metatranscriptome	128	Y
F069974	Metagenome	123	Y
F070969	Metagenome / Metatranscriptome	122	Y
F075090	Metagenome / Metatranscriptome	119	N
F081911	Metagenome	114	N
F083612	Metagenome / Metatranscriptome	112	Y
F084363	Metagenome	112	N
F085995	Metagenome / Metatranscriptome	111	N
F087517	Metagenome	110	Y
F087524	Metagenome / Metatranscriptome	110	N
F089000	Metagenome	109	N
F089166	Metagenome / Metatranscriptome	109	Y
F090660	Metagenome / Metatranscriptome	108	Y
F091491	Metagenome	107	Y
F092318	Metagenome / Metatranscriptome	107	Y
F097297	Metagenome / Metatranscriptome	104	Y
F101613	Metagenome / Metatranscriptome	102	Y
F101715	Metagenome / Metatranscriptome	102	Y
F104734	Metagenome	100	Y
F105643	Metagenome	100	Y

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
JGI24741J21665_1001627	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Rhodanobacteraceae → Rudaea → Rudaea cellulosilytica	6282	Open in IMG/M
JGI24741J21665_1002848	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	4351	Open in IMG/M
JGI24741J21665_1003217	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Rhodanobacteraceae → Rudaea → Rudaea cellulosilytica	3971	Open in IMG/M
JGI24741J21665_1003937	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	3404	Open in IMG/M
JGI24741J21665_1004591	Not Available	3029	Open in IMG/M
JGI24741J21665_1009846	All Organisms → cellular organisms → Bacteria	1736	Open in IMG/M
JGI24741J21665_1010093	Not Available	1707	Open in IMG/M
JGI24741J21665_1012102	Not Available	1491	Open in IMG/M
JGI24741J21665_1012293	All Organisms → cellular organisms → Bacteria → Proteobacteria	1475	Open in IMG/M
JGI24741J21665_1015747	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → unclassified Sphingomonas → Sphingomonas sp. URHD0007	1244	Open in IMG/M
JGI24741J21665_1016574	Not Available	1201	Open in IMG/M
JGI24741J21665_1020214	Not Available	1048	Open in IMG/M
JGI24741J21665_1020336	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Deuterostomia → Chordata → Craniata → Vertebrata → Gnathostomata → Chondrichthyes → Elasmobranchii → Selachii → Galeomorphii → Galeoidea → Orectolobiformes → Hemiscylliidae → Chiloscyllium → Chiloscyllium punctatum	1044	Open in IMG/M
JGI24741J21665_1022783	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	969	Open in IMG/M
JGI24741J21665_1025045	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	913	Open in IMG/M
JGI24741J21665_1025166	All Organisms → cellular organisms → Bacteria → Proteobacteria	910	Open in IMG/M
JGI24741J21665_1025566	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	902	Open in IMG/M
JGI24741J21665_1026022	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	892	Open in IMG/M
JGI24741J21665_1028122	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → environmental samples → uncultured Corynebacteriales bacterium	849	Open in IMG/M
JGI24741J21665_1031096	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	800	Open in IMG/M
JGI24741J21665_1031176	All Organisms → cellular organisms → Bacteria	798	Open in IMG/M
JGI24741J21665_1034100	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	757	Open in IMG/M
JGI24741J21665_1034368	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. STM 3843	754	Open in IMG/M
JGI24741J21665_1034477	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	752	Open in IMG/M
JGI24741J21665_1035612	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → unclassified Sphingomonas → Sphingomonas sp. URHD0007	739	Open in IMG/M
JGI24741J21665_1036686	Not Available	726	Open in IMG/M
JGI24741J21665_1039301	Not Available	699	Open in IMG/M
JGI24741J21665_1039464	All Organisms → cellular organisms → Bacteria	697	Open in IMG/M
JGI24741J21665_1039585	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → environmental samples → uncultured Corynebacteriales bacterium	696	Open in IMG/M
JGI24741J21665_1040614	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	687	Open in IMG/M
JGI24741J21665_1041233	Not Available	681	Open in IMG/M
JGI24741J21665_1041907	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	675	Open in IMG/M
JGI24741J21665_1042367	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → Sphingomonas sediminicola	671	Open in IMG/M
JGI24741J21665_1042887	All Organisms → cellular organisms → Bacteria	667	Open in IMG/M
JGI24741J21665_1045402	Not Available	646	Open in IMG/M
JGI24741J21665_1048700	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → Sphingomonas sediminicola	623	Open in IMG/M
JGI24741J21665_1048765	Not Available	623	Open in IMG/M
JGI24741J21665_1049109	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	621	Open in IMG/M
JGI24741J21665_1049486	Not Available	618	Open in IMG/M
JGI24741J21665_1049762	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → Sphingomonas sediminicola	617	Open in IMG/M
JGI24741J21665_1050028	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	615	Open in IMG/M
JGI24741J21665_1051449	Not Available	606	Open in IMG/M
JGI24741J21665_1051480	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	606	Open in IMG/M
JGI24741J21665_1051805	Not Available	604	Open in IMG/M
JGI24741J21665_1051852	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	604	Open in IMG/M
JGI24741J21665_1054542	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium	589	Open in IMG/M
JGI24741J21665_1054721	All Organisms → cellular organisms → Bacteria → Acidobacteria	588	Open in IMG/M
JGI24741J21665_1055942	Not Available	581	Open in IMG/M
JGI24741J21665_1056846	Not Available	577	Open in IMG/M
JGI24741J21665_1057158	All Organisms → cellular organisms → Bacteria	575	Open in IMG/M
JGI24741J21665_1058128	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	570	Open in IMG/M
JGI24741J21665_1058370	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → Sphingomonas segetis	569	Open in IMG/M
JGI24741J21665_1059535	Not Available	563	Open in IMG/M
JGI24741J21665_1059750	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	562	Open in IMG/M
JGI24741J21665_1064879	All Organisms → cellular organisms → Bacteria → Acidobacteria	540	Open in IMG/M
JGI24741J21665_1065795	Not Available	536	Open in IMG/M
JGI24741J21665_1066444	All Organisms → cellular organisms → Bacteria → Acidobacteria	534	Open in IMG/M
JGI24741J21665_1067261	Not Available	530	Open in IMG/M
JGI24741J21665_1067887	Not Available	528	Open in IMG/M
JGI24741J21665_1068502	Not Available	526	Open in IMG/M
JGI24741J21665_1070080	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → Sphingomonas segetis	520	Open in IMG/M
JGI24741J21665_1071693	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	514	Open in IMG/M
JGI24741J21665_1074411	Not Available	506	Open in IMG/M
JGI24741J21665_1075174	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	503	Open in IMG/M
JGI24741J21665_1075939	Not Available	501	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
JGI24741J21665_1001627	JGI24741J21665_10016271	F033870	GRIVRGSPVGDTPPIKSRRMTMNVSMEAPRTPQHDLVAMTAALRGALMQRVEQGIQSSGLATYFNYLVAKRLTLAGPQTAAAMAEQLRQNLRVVEDTTCQMLEQGLVTQEGETWQITEAGRNALTSANDTGTEVLNDIREAIGAPACDQLVAGMRGALAALRKAA*
JGI24741J21665_1002848	JGI24741J21665_10028485	F019547	AYEATFPNGALKPSLDKLNAGPMVPGDPLIPNSEPTVSAGQGDVVVSIHRPLDLSPDDIPSESLFTPVDFGPGSIVRIKATFIAPVGPYATTGGFAIGLGGRTGGKDDLSTETRVFTTINVRPNQLVKLQVPFGAVETTNMVLPQDVKDAIFSTTDPQPFTLELTIDRKLGKGTAKLMVIDQVFSLDFTLADFLADGGPVITNVGPGIAVNSNGPGQTASVHVREFRIYTE*
JGI24741J21665_1003217	JGI24741J21665_10032175	F033870	MNVSMEAPRTPQHDLVAMTAALRGALLQRVEQGIQSSGLTNYFMYIIAKRLMFAGPQTSASLSEQLRQDQHIVRDNLRLMLERQMVQQDGDAWVITEAGRSAMSAANDSGTQVLEDIRSAIGASACDQLVAGMRGALAALRAA*
JGI24741J21665_1003937	JGI24741J21665_10039375	F063910	MSERYDLELISRRRAFSFLGLTAALSVAVPATVLIATDAEARVGNPGSAVSVAGANRRDRRQDRRYKKSPTTPTTTGQGE
JGI24741J21665_1004591	JGI24741J21665_10045918	F020078	MRAGIRFCWQSGAIALAAIIFAFLVPGVALCKLVSLASIASAITITTFVAGFGLYLAGHLIEKRDPQCERVDHYLQASIPVTGAGLLWLHVILQTGPWRDRSIEPGVAVVIVV
JGI24741J21665_1009846	JGI24741J21665_10098461	F045003	VTIKTLTWLGLALFLLVILVPFWWIASMSFKTYEQIQFATSIYVPSPFTWEN
JGI24741J21665_1010093	JGI24741J21665_10100931	F017759	LLFGVVVGLLNSECPQQDRAYESKYGADSQHIELQGKVHGSASLVDARRLARNQRRPKVPAIGPVLFAGEIAYRICAMDNRLIVRLKKSEEPKILTVQNSRGTEFFMANLRQIPSIL
JGI24741J21665_1012102	JGI24741J21665_10121022	F019688	FAALVLGSVGASYLILAHRLWWAYAVIMLAQVVYFFSAGSAELAVMRASVLFAYGVITLPPMRPLAPLATDIAVMVICFCYIMIVLCLYSAAWVASGGRVPQGAYGRRPTPLEPLRPSRLLDTFLPGHRSQDVTLWEGAVFALSSLLFVAASMAPFYGIRRVQNAFQSTFATQVQQVCPAQPPEAMIACWAQFYPWSRVAIDLGAPIVIAVICLVLANRLRHFGRQHFINRLAELKVLPAASTLFLRAFRDDQVRIRRASRNLFSSVFDLGRVPATLDELMLERLDGRGDLIAIGNPQDRKGAARQSPWGAQRLYVDDAHWQETVTMLARDADRIVLCIDASDGVRWEIAHVLQSGHAGKTLFFLNPSTDVQTRKRQLQEDFGVSAADLASIDVDRVLALRTTSTDQLILMVCDKPERDAYLVAARLAFEGRAGNLTMSAKGR*
JGI24741J21665_1012293	JGI24741J21665_10122931	F052832	IRRRAFRDGFYDGRQGCPMRRLATRKARWLYALGRIFANLAPTNLQVYEQRHATEAAVAAFKAMPVRYMAR*
JGI24741J21665_1015747	JGI24741J21665_10157472	F057608	RPRTDVWQVAIAGQAAEHMPLATRLGYAGLYGGFQWYAQKAEDETDAWSVLAELDDPGVLGPEDIASIRQARSRAQVAADKIEANLPRIVAAGARLGIKPGAVEETSLTANSLSKLCAPLGSAG*
JGI24741J21665_1016574	JGI24741J21665_10165742	F055629	SLWEDPWFFAAVAPNGGQEQREPCPVTGYACEGDLSYLCEEYGCARKGGLSPRSEENF*
JGI24741J21665_1020214	JGI24741J21665_10202144	F105643	ILLYPRRQRGVSDMFIRKLKPGERASEEGDRISIARLSTGRISWSGLLDAGRTGVTAISPIDFPSIQEAETDAIAWARGHGATELQIEGPKI*
JGI24741J21665_1020336	JGI24741J21665_10203362	F019338	MPAMRRTEAVLTAGAVACLAFVSIVYPVFAQDVDPRCKDIFDKVACTCAVRNGGHVIPPPVGVKREGLKLRPKEEAGGTQTLDGGRVAFPKYYRREGLKFHRSRALEGY
JGI24741J21665_1022783	JGI24741J21665_10227833	F064778	FSAACERGKPPGVPGAANGAGYSDDGRKGQEITDLGR*
JGI24741J21665_1025045	JGI24741J21665_10250453	F061753	MSATRIRDRFMPWAGLALGTLGGGLAHQIGAESTFQDCAFSSPLMVV
JGI24741J21665_1025166	JGI24741J21665_10251661	F012999	MDYDLAESLMDAGFPQIGKGSLIGPMNKLVWRSGDRVYVPTLEELIEACGENFGSLDRQHGGWLASANFDQSCFAKT
JGI24741J21665_1025566	JGI24741J21665_10255662	F092318	VTVEHLHPGELGSFPEPPDARRWLVEGVVDVSVDGDGPWDPDEGGPAPAVVLRMPSYVARHLACVLDDWSTIGRLLESSRGGDERDLAGALYEAARAADSLRADGL*
JGI24741J21665_1026022	JGI24741J21665_10260222	F002217	DSRYKIAGQGKPSISAHVGEQLLLRITARRGKSWNRDGSIHGFTLLRAKDRTKIEGWNLLLQPGLNEFELVAPLEPGEYVIVCTVICSEEHEGMNMRFTVVP*
JGI24741J21665_1027181	JGI24741J21665_10271811	F057403	QAERARLQNLLDVYEAGRLNRRGEDERLKREVTPDRAGNIRTRIARLDQVIAESDEA*
JGI24741J21665_1028122	JGI24741J21665_10281221	F085995	THVIRLGLAEPDRDWGTLRCVLGCSPRRQCDRSRLAGAMHARWLRARLSRWSRRPWSGGYLDQDGPAAPGKRTWSSAIGAYLAARNTVLQVGERELLERWSTVEQAQVTVIETAPWEGVVLDRTGELRLVGWESSVSPHRPVGSELSCWVLPTLVPDEHLLVRRTVPTPW*
JGI24741J21665_1031096	JGI24741J21665_10310961	F017168	KALTETIVASSCLFLFTACLFGLIRYHGQALEQEATQTRQELAMRDLQLEKLTSALSTQARSKTSAIEVNSRLLLQNYGGFLPRQGHKYAEQIREASAQMERLRQDLVGNPDSDNDEKAAYDSVA*
JGI24741J21665_1031176	JGI24741J21665_10311761	F064503	MNPAEADLVRHELASLTRRAEAAESSRDQYKRERDEARAILARIKSSLAEGFND
JGI24741J21665_1031253	JGI24741J21665_10312532	F087524	MSRGRTYTLRNAASIVFALTAVIPLLLFTYTLYSLNQLKLTEAQMGLGVALTCALVGLFIFSNLMGRLSEVLRYLEEHHDAGARPA
JGI24741J21665_1034100	JGI24741J21665_10341003	F089166	MCIACELGYWAMVDALEAERNAAKKNNAGDHPAFSCEPEAEPSPAPRVQRT
JGI24741J21665_1034368	JGI24741J21665_10343681	F064047	MTLMKSSRAGLFALAFGILLSLFLSVPSYDVSYAQTQAPAAAPAAPA
JGI24741J21665_1034477	JGI24741J21665_10344772	F032686	LRDAAEPVSEQGKGSLNGQDIELQGSWKAGNRQYEAKYSGAFVRRHADLKGTQTWTDGGKSFTRACTGTIKRPFRVFLPGEKK*
JGI24741J21665_1035612	JGI24741J21665_10356122	F057608	LWRPRTNAWQSAMAGQVAERMPLATRLGYAQLYDAFQWYAQKASDETDAWSVLGELDDPGVLSSADLANVRQARSRAQVAADKMNANLQGFVTTAGKLGIAPAAVEETPLTSQQIKELCRPLR*
JGI24741J21665_1036686	JGI24741J21665_10366862	F060260	MSRPLKVQIVERARELVADEQNWCQRHLAQDVNGASVSPTSTAAVKRCGLGAVIAAAYPLTHDYDAA
JGI24741J21665_1039301	JGI24741J21665_10393012	F049708	MRVKWVLIGFGILYLVFALSFIPTDKILPRPIEESWELVRDILWAGMTIISIGLLEVMSPLATPFASAXGLRRGDXAEILLAVILVAXAVXSALRLRRKDLTPRWRGTHTFFLLLALTLVAIVRFTLYSWSHFA*
JGI24741J21665_1039464	JGI24741J21665_10394642	F037384	DQASQNLQLADAAATTDGDRNAAQLLHHAFDLVQQWSDKLVTAKKSMDTAKYSTSPDALREDPLSQKIITCGRFLTQMLGSATFQDDASCH*
JGI24741J21665_1039585	JGI24741J21665_10395851	F070969	FEGGGPASASAGEVRLPCVTDSEGTHALIYTSYRQMALAHRLSDDAPWTEVPXGTLFEKWPPEVDAWLNGGGELGFPLDPTDISTVADLAAGLEVDEAYEIGPDDVFSDFPGPAVPDQVDCAVVLALFEMPEVLEVLRVFRRLEEPGGRTWRILLVLVDAGSRGMAIARTVADAVNDASDECCEVHVADVHDDEVYDAVSHFLQVGVPLWRRQGLHVPDTLEGLDGG*
JGI24741J21665_1040614	JGI24741J21665_10406141	F002154	KEKGATKRAVTHRERCSLVTLSAERCLGGPSRSCHGEGNRQQGSLEPLLDLSGVWAMARFERRTAEQERPYLAAWSGKDRAYKAGWLKAGGAGRESERSVVPRKACKTTRRREGTLL*
JGI24741J21665_1041233	JGI24741J21665_10412332	F017026	MISSHAVSKSTFRISIVAAVVAAAYTAYEGWQSNVQAYNGTLQMVLTYECGGAQSDDNLRAALNGARIDLSKVGCSNRPFFWASYHEIIQAREGKLRREKLSDIPMFRVNLEGAAAIVNAVIWFVLVNVWGVVFLC
JGI24741J21665_1041907	JGI24741J21665_10419071	F000262	MNGGIKSPGRTYLTCMTILATLAAFGCSGQDFGSLQPNPEDLCKCLPIEPDIADYRHXAKHVPIPNEVPQEVSVDSILTWPQDLVIPPDAPRTGRELQVFHIANAFLQNVAVNSADCDISMEISQTADKKAPRMIVETPVDSEYCSARQNLQSQLKQHGFRLDSKHGGELAQALSVEVLG
JGI24741J21665_1042367	JGI24741J21665_10423672	F104734	MFRMRFGMSELRNRALAAIDEVAEQAQSQPVERQLALRFALAFLANFADERWPFDNFWRAIATPDQKVRRATVVAARNAIHRAIKH
JGI24741J21665_1042887	JGI24741J21665_10428871	F090660	MSTVATATDKKAHMGTDEKPERKLQRARVDDKFKI
JGI24741J21665_1045148	JGI24741J21665_10451482	F097297	SAATQDVINEKEFKKGAAHESAAVVIVDNPAPQTVVHENRNAAVAEITPDEEAAVLATVAAVLAKIDPQPPTADDNVTRPEPVREDAELSAAKRAIIHEWESWSALHSDELGDPKVAEYFFRHLQTKKPQLLNFGFQDKLMMVRRCLVD*
JGI24741J21665_1045402	JGI24741J21665_10454021	F019847	VIQSVLIIVATAFATWAIMRWAMLKPDSPKSRSPEEREADRAKDIGTQLDGARDRASVAEVERNKLALAKAVKAALWVTDARLNLAVPELLEMAQLWVGKSKVRGEQWTPPKGVTDIEGLDDANDPWASWSFDGHHWRLDAAWRPSALPEEIEGDVGTFKVTVDRQLVLDMTIS
JGI24741J21665_1048700	JGI24741J21665_10487001	F083612	SEPTVSAGQGDVVVSIHRPLDLSPDDIPSESIFTPVDFGPGSIVRIKATFIAPVGPYATTGGFAIGLGGRTGGKDDLLTETRVFTTINVRPNQLVRLNVPFGAVETTNMVLPQDVKDAIFSTTDPQPFTLELTIDRKQGKGTAKLMVIDQVFTLSFTLADFLADGGPVITDVGSGIAVNSNGPGQTASVHVREFRIYTE*
JGI24741J21665_1048765	JGI24741J21665_10487651	F009846	RDQASKAELERNRLALAKAVKAALWVRDARLNLAVPELLKMAQLWVGKSIDRGKTWTAPEGVTDIEGLDDVEAPWASWSYDGHHWRIDAEWRPSALPEEIEGDVGSFKVMLDRQVVLDMTISSKDPQVLWVDALTVGPWVSQLLSFAGARTSDAKARSSERSAKKNQERADNIHWS*
JGI24741J21665_1049109	JGI24741J21665_10491092	F046510	KEFTANATAFIEHLPLLTKARAAYEVAIRTSTEMRKILDTSDENLRTLMTQLEQQVNLREVKSATDKKPPEAAKVESIKETKEGGGRAFRWP*
JGI24741J21665_1049486	JGI24741J21665_10494862	F089000	MGEPTPATPASKYFAATVAMIAGAFFFAVGAGLLPIPGGPSNLHGPLWLLLCVGLAFFLAGLAILIPMLGHANDSGDLPAGAPFWLRAMQYL
JGI24741J21665_1049762	JGI24741J21665_10497621	F083612	GPMVPGDSLIPDSNPTVSALPGEVLVSIHRPLGLSPDDIPSESIWSTPVAFGPGSVVRISATFRAPVGPLPGGGFAIGLVGRTGGRDDLATETKVATTINVRPGFLVRLNVPFGAAAGTNMVLPQAVKDAMFSTTDPVPFTLTLTIDRTSGRGKSELKVADQTFSLPFELADFRADGGPAITAVGPGIAVNSNGPGQTASVHVRE
JGI24741J21665_1050028	JGI24741J21665_10500281	F048455	RTQGSRLRYTCNIGYTPQECQVATTVLKKALARYPVEALGEWSWVLVRTEDWKQILSVRGFDTDRPAFSYLPERETFLDGSLVAGVSSRGVELRVIWHMPIEDLLDLAVRHELAHALCNEHDEAKTDRAATALKNGASLPCQ*
JGI24741J21665_1050151	JGI24741J21665_10501511	F019220	TFLVSFLLFCSSLHADNLEKTQKKELESQVKAITAEAETLEKSGHLAEARARYAESQALIETKDVTEALKHLDEQIHKRVKDNLSDAKRLYEARKFKETAAVLEESLKFQAFLAQISYDLALCYYQLGDRGKAVVYLSKARLGTADPKQKQKMAQLLALFTTGENGISAKDSDKDRINRXNHLVDSIGLEASLDDEFGEETSAT
JGI24741J21665_1051449	JGI24741J21665_10514491	F006872	MRVRSILLASFWVALFIWVGYNGMQAVSSYFTTNSITEDAFRDAADRQRQRNPSELFSSDFLADLRATVLTGARRQGVMVDAPSLKVTAEGGLVKVNFGWTYRTWPLTIWGLDTGVPVP
JGI24741J21665_1051480	JGI24741J21665_10514801	F087517	YGVEALRSVLYPGSPRAFSLEASMATLVLFALVMFGVAFLMVNRKTTRPAA*
JGI24741J21665_1051805	JGI24741J21665_10518052	F031629	MRSRLSEIPYSRWAAALPILAPIIGWLSYRDEPTLSLLDRVAIPFYLSGLLAGPAYVPFAAALFWWLRDEPAARYRAISWKAPLLFLPVFLVYLLAMRWWTGSTAPLVETLLFYGLVVLLFGYGYVLLIHAGRRALDRRGAIEVTPARL*
JGI24741J21665_1051852	JGI24741J21665_10518522	F101613	MARKNGPTILQEELYPPPSAGPREEVEDARLLDLEAEQESPFLRGQK
JGI24741J21665_1054542	JGI24741J21665_10545421	F084363	RYAVKDFEKFIDDWGQFLKINPDDHFLSLPSSLGTGYFYGKIINDAMSFLVMKAKFNDDIILDRQAIDETSLLLYFIQVDTKGLYQVSTDLDKVEYTGNVKRRVVFLSSTNYPIQVQYSKNTELKLIGVYFKHSLLRKFLKRDVFHYLKEYSQSRLKDRDKRAIAKDEDILLREIFKTDVHDELGQIVLYNRILLL
JGI24741J21665_1054721	JGI24741J21665_10547212	F034283	KYLSEDALKDAGVGPVFAAWDDVTIQITPTSVIAWDMRQVDRQVFHSAFENHPTYLLAVER*
JGI24741J21665_1055059	JGI24741J21665_10550591	F019847	MTQSLLLIAGTALATWFIMRSVRFVPRALNREEREIRSAKDIGNQLDGARDRASLVEVERNKLALAKAVKAALWVTEARLNFAVPELLKIAQMWIGQSTDRSKKWKAPKGVTEIEGLDDEQAPWAAWNFNDHHWRIEGQWGPSGIPEDMEVDVGSCKVFLDRQVVLDMTLSRKDRQVM
JGI24741J21665_1055942	JGI24741J21665_10559421	F034564	GMNRSGRLSGYWYGAVCIAGLGFGLLGERRPFGQGILAHPFIVYAFVVAAGLLVIRVVRQQPVPELIPERALGLGCAAGVALFLAGNFIAAHLIGR*
JGI24741J21665_1056846	JGI24741J21665_10568461	F101715	MRDFGEYLRAYWAYVLANLGWGKALSVALVWLAGMFAPLVAKTLLELPNWMAMTWMIVW
JGI24741J21665_1057158	JGI24741J21665_10571581	F041998	PLRVGPAEQRLGFLPGQLEAVQRCSDRLATAPQPEPLASPMDKAAQRPARGWIGPNYGRRRGRALGGVDDLAEFGSAVRAKKGRRPPVRRNVSAAGPWAL*
JGI24741J21665_1058128	JGI24741J21665_10581282	F020237	MTIGKKLYVNFGAVLAMVVVLFLVNFFAVQREHVAKAAAAASLDMAEAT
JGI24741J21665_1058370	JGI24741J21665_10583701	F004350	MKPYILGAICVWFVCGIIGAVMLGQQRVDIPTIAGGPIAXWNGFNKPVN*
JGI24741J21665_1059535	JGI24741J21665_10595352	F058774	KPLEQDAEYHFTTGYPGPLTPAADEVYQQFVMVDALAQFATDKMDLEQTVKWGEEKIKAIYAKFA*
JGI24741J21665_1059750	JGI24741J21665_10597502	F069974	LALTSGVXYVGLDVTTHTCSVVTKMSHGMKMMGKYKSKEAAEKAMAGMKKCHA*
JGI24741J21665_1064879	JGI24741J21665_10648791	F026523	IAPIDQDEWARNLGYMEESPAELVALYGLNRHHNTRALRRLKSGDLEKAAFHPELKEKVTLASYIERMGGHGTNHLQQIERLKKEAGQAKIA*
JGI24741J21665_1065795	JGI24741J21665_10657951	F075090	PAIVQEAFSLAGAIVAEGEIAKAAALKPDEIPDGVSGDTVWKVADNLFTISVLPKDAVPAEIGDLNDLIVGGNAQKCRGDFFAGAMLDVVESTTIARAYTTCQTQQAATSTYYFAMPRKQGGGLYLTKIIATGVEVPPTIERAIKELDAKVRGVITAALARL*
JGI24741J21665_1066444	JGI24741J21665_10664441	F025759	RGLLQRAHLTANWPPVYIGKESDKHWEEGEDLSLLEFNAIQYTRKGKAAATEEQLARIKKVPKREFMRRGINQHTLEKICRREPVRARKLEECLKVLQQYENSAGSSARDLVLAGH*
JGI24741J21665_1067261	JGI24741J21665_10672611	F062121	GIAAEESDEPQTECDANPIDQFWMAAGDLLIEIVKRQPDIQPIIDAVIDAGGDIEIAAHNQAGKISFALAEPSGLRHVLLADARQLLE*
JGI24741J21665_1067887	JGI24741J21665_10678871	F018388	LVGSAGVDVVPLTHAKPIAVSHELLQQASIITPEGVTVDPNNKEELKKYDNRHDLSELADTLRKGFGVTASHLTQLIACTGTVVCSVPSADGKRIDTYRASGNVALQPNVLVTVKHAFQDLDTGQLLPIDKCRFRNWKHPNDEIAIIIDDPSQLPPIATSMSKTPELKRQDLTAV
JGI24741J21665_1068502	JGI24741J21665_10685021	F012520	RLTPGGRDSPPPGPVHPPLVFRHVTEWGTMPFVTDGGGREVAMMLVAYPWVILLAAGWVVGAVFVGTVGGATRGVQGFFVWTLAALMFSPLLALLGLIAVLLGDLVREIEIKAIHGPEELPLPPPRRQSGRFAHLAGEDE*
JGI24741J21665_1069061	JGI24741J21665_10690612	F000036	MACDSTEQLRAEYGPFHTREEAESEARKLGFGYLLRYEHIMGEDDEIQEVRCVFIELPGAGATVIPIRPNLHTRCATCGESATHDEPWQAEVWADIHEFEHSRHFVRLFEHKRGEGLREIANWRAA*
JGI24741J21665_1070080	JGI24741J21665_10700802	F091491	KVIKLAMTAHSQFPEDVLSREPELAAQIEKEASHTGMDVAHFVADTVQRFMAHEDGESWTTIVSNIQRTDDPGYTFISTIMHARVSHKCEQHG*
JGI24741J21665_1071693	JGI24741J21665_10716931	F031590	HPVFWHLACAVNSGFNREDPMSDEKRNAEEHETPEFPQQRDDSPYAALNEPHGAPGGARQNVRSETKQGAVARPGGATQNSGGAIVSNDEELGHGPGRGAD*
JGI24741J21665_1074411	JGI24741J21665_10744111	F013019	GLMARSYLESTLAGTLPSFAAEWDAHRRSYSPTSPPDDAAFLAAFRAHVVSLLSAGRIAETSRFFYALERLLGEADPILRDLLDRDVVRALATECRLAGIDARRVDPYLGRLTRGAWISSA*
JGI24741J21665_1075174	JGI24741J21665_10751741	F081911	SYLDPGTETFPGERVGNTGYIENPNQRAGSVIDNTSAGLLNTQSALPGPWTLPFKSNPWIGY*
JGI24741J21665_1075939	JGI24741J21665_10759391	F057494	MDNQPVKKDLVDAILELREEVERRLQANKYYVAMNKLDELLAAIRPLEVIEAKVNPTDSPTPEAEVTTPPEPEGTSEKVWTGLVEESVVEGEAL

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300001915: Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C7

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences