NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Metagenome / Metatranscriptome Family F055629

Metagenome / Metatranscriptome Family F055629

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
Select file to download:
   Download


Overview

Basic Information
Family ID F055629
Family Type Metagenome / Metatranscriptome
Number of Sequences 138
Average Sequence Length 63 residues
Representative Sequence MEAVVGKSLWEDPWFFAATAPNDGQEQRELCPVTGYACEGDLSYLCEEYGCARKGGLSPRSEENF
Number of Associated Samples 117
Number of Associated Scaffolds 138

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Bacteria
% of genes with valid RBS motifs 65.69 %
% of genes near scaffold ends (potentially truncated) 26.81 %
% of genes from short scaffolds (< 2000 bps) 77.54 %
Associated GOLD sequencing projects 108
AlphaFold2 3D model prediction Yes
3D model pTM-score0.24

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
Powered by Skylign

Most Common Taxonomy
Group Bacteria (60.870 % of family members)
NCBI Taxonomy ID 2
Taxonomy All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil
(13.768 % of family members)
Environment Ontology (ENVO) Unclassified
(25.362 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Soil (non-saline)
(50.000 % of family members)


 ⦗Top⦘

Multiple Sequence Alignments

Select alignment to view:      

 ⦗Top⦘

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 12.90%    β-sheet: 2.15%    Coil/Unstructured: 84.95%
Feature Viewer
Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  		pTM-score: 0.24
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

 ⦗Top⦘

Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 138 Family Scaffolds
PF00015MCPsignal 28.99
PF14026DUF4242 15.94
PF13649Methyltransf_25 7.25
PF00672HAMP 6.52
PF08241Methyltransf_11 5.07
PF13458Peripla_BP_6 3.62
PF00497SBP_bac_3 2.17
PF00486Trans_reg_C 0.72
PF00188CAP 0.72
PF03330DPBB_1 0.72
PF07238PilZ 0.72
PF16870OxoGdeHyase_C 0.72
PF07719TPR_2 0.72

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 138 Family Scaffolds
COG0840Methyl-accepting chemotaxis protein (MCP)Signal transduction mechanisms [T] 57.97
COG2340Spore germination protein YkwD and related proteins with CAP (CSP/antigen 5/PR1) domainCell cycle control, cell division, chromosome partitioning [D] 0.72

 ⦗Top⦘

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
All OrganismsrootAll Organisms60.87 %
UnclassifiedrootN/A39.13 %

Visualization
Powered by ApexCharts

Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
2228664021|ICCgaii200_c0875478All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae1772Open in IMG/M
3300000787|JGI11643J11755_11548655Not Available521Open in IMG/M
3300001139|JGI10220J13317_11064544Not Available589Open in IMG/M
3300001915|JGI24741J21665_1016574Not Available1201Open in IMG/M
3300002459|JGI24751J29686_10098509Not Available610Open in IMG/M
3300003324|soilH2_10215342All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales2727Open in IMG/M
3300003911|JGI25405J52794_10031362All Organisms → cellular organisms → Bacteria1104Open in IMG/M
3300004114|Ga0062593_100627973All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales1031Open in IMG/M
3300004114|Ga0062593_101006855All Organisms → cellular organisms → Bacteria → Proteobacteria855Open in IMG/M
3300004114|Ga0062593_101449009Not Available737Open in IMG/M
3300004156|Ga0062589_102171338Not Available568Open in IMG/M
3300004463|Ga0063356_106522027All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium500Open in IMG/M
3300004479|Ga0062595_102086566Not Available551Open in IMG/M
3300005093|Ga0062594_101384711Not Available713Open in IMG/M
3300005093|Ga0062594_102372578Not Available579Open in IMG/M
3300005093|Ga0062594_102893585Not Available535Open in IMG/M
3300005104|Ga0066818_1006404All Organisms → cellular organisms → Bacteria → Proteobacteria796Open in IMG/M
3300005162|Ga0066814_10002710All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria1655Open in IMG/M
3300005163|Ga0066823_10065949All Organisms → cellular organisms → Bacteria685Open in IMG/M
3300005164|Ga0066815_10103345Not Available538Open in IMG/M
3300005164|Ga0066815_10126800Not Available501Open in IMG/M
3300005204|Ga0068997_10046438All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales822Open in IMG/M
3300005276|Ga0065717_1009045Not Available665Open in IMG/M
3300005290|Ga0065712_10000796All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales8031Open in IMG/M
3300005290|Ga0065712_10151646All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales1365Open in IMG/M
3300005293|Ga0065715_10002147All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae5105Open in IMG/M
3300005295|Ga0065707_10146210All Organisms → cellular organisms → Bacteria1711Open in IMG/M
3300005332|Ga0066388_101213787Not Available1291Open in IMG/M
3300005332|Ga0066388_101339678All Organisms → cellular organisms → Bacteria1238Open in IMG/M
3300005332|Ga0066388_104543302All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria707Open in IMG/M
3300005340|Ga0070689_100000335All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria27399Open in IMG/M
3300005367|Ga0070667_100292293All Organisms → cellular organisms → Bacteria1466Open in IMG/M
3300005406|Ga0070703_10031424Not Available1606Open in IMG/M
3300005434|Ga0070709_10238428All Organisms → cellular organisms → Bacteria1305Open in IMG/M
3300005440|Ga0070705_100097909All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria1845Open in IMG/M
3300005455|Ga0070663_100797136Not Available810Open in IMG/M
3300005529|Ga0070741_10078601All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria3647Open in IMG/M
3300005536|Ga0070697_100124741All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium2157Open in IMG/M
3300005547|Ga0070693_100455476All Organisms → cellular organisms → Bacteria899Open in IMG/M
3300005548|Ga0070665_100049480All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria4217Open in IMG/M
3300005713|Ga0066905_100238190Not Available1389Open in IMG/M
3300005764|Ga0066903_102641857All Organisms → cellular organisms → Bacteria973Open in IMG/M
3300005841|Ga0068863_101276420All Organisms → cellular organisms → Bacteria741Open in IMG/M
3300006042|Ga0075368_10169127Not Available918Open in IMG/M
3300006755|Ga0079222_11584442Not Available620Open in IMG/M
3300006806|Ga0079220_10369118Not Available922Open in IMG/M
3300006806|Ga0079220_10993563All Organisms → cellular organisms → Bacteria → Proteobacteria665Open in IMG/M
3300006854|Ga0075425_100009988All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria10112Open in IMG/M
3300006871|Ga0075434_100974778All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria862Open in IMG/M
3300006954|Ga0079219_10320701All Organisms → cellular organisms → Bacteria974Open in IMG/M
3300009094|Ga0111539_10386730All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales1629Open in IMG/M
3300009111|Ga0115026_11004054Not Available667Open in IMG/M
3300009147|Ga0114129_11956402All Organisms → cellular organisms → Bacteria710Open in IMG/M
3300010046|Ga0126384_10438003All Organisms → cellular organisms → Bacteria → Proteobacteria1113Open in IMG/M
3300010358|Ga0126370_11115193Not Available728Open in IMG/M
3300010359|Ga0126376_11439901Not Available715Open in IMG/M
3300010362|Ga0126377_10142990All Organisms → cellular organisms → Bacteria2239Open in IMG/M
3300010371|Ga0134125_11232222Not Available817Open in IMG/M
3300010371|Ga0134125_12955763Not Available516Open in IMG/M
3300010371|Ga0134125_13086721All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria505Open in IMG/M
3300010373|Ga0134128_10005433All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales15454Open in IMG/M
3300010375|Ga0105239_10626517Not Available1228Open in IMG/M
3300010396|Ga0134126_10081031All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae4016Open in IMG/M
3300010396|Ga0134126_10777177All Organisms → cellular organisms → Bacteria1084Open in IMG/M
3300010396|Ga0134126_11329844All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria795Open in IMG/M
3300010397|Ga0134124_12547980All Organisms → cellular organisms → Bacteria → Proteobacteria554Open in IMG/M
3300010399|Ga0134127_10967983All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales910Open in IMG/M
3300010399|Ga0134127_11270267All Organisms → cellular organisms → Bacteria805Open in IMG/M
3300010401|Ga0134121_12571431All Organisms → cellular organisms → Bacteria → Proteobacteria552Open in IMG/M
3300012515|Ga0157338_1000736All Organisms → cellular organisms → Bacteria2080Open in IMG/M
3300012899|Ga0157299_10007656All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria1743Open in IMG/M
3300012905|Ga0157296_10173515Not Available666Open in IMG/M
3300012906|Ga0157295_10000533All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae4773Open in IMG/M
3300012906|Ga0157295_10008275All Organisms → cellular organisms → Bacteria1764Open in IMG/M
3300012909|Ga0157290_10108259All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria832Open in IMG/M
3300012913|Ga0157298_10018888All Organisms → cellular organisms → Bacteria1275Open in IMG/M
3300012951|Ga0164300_10002404All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria4724Open in IMG/M
3300012958|Ga0164299_10074463All Organisms → cellular organisms → Bacteria1681Open in IMG/M
3300012960|Ga0164301_10050429All Organisms → cellular organisms → Bacteria2139Open in IMG/M
3300012985|Ga0164308_11565009Not Available607Open in IMG/M
3300012989|Ga0164305_10000077All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales28388Open in IMG/M
3300013308|Ga0157375_11882219All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria710Open in IMG/M
3300014299|Ga0075303_1008014All Organisms → cellular organisms → Bacteria → Proteobacteria1344Open in IMG/M
3300014497|Ga0182008_10499905Not Available668Open in IMG/M
3300015201|Ga0173478_10002929All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales3791Open in IMG/M
3300015371|Ga0132258_10064018All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria8491Open in IMG/M
3300015371|Ga0132258_10867074All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria2279Open in IMG/M
3300015371|Ga0132258_13646676All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria1052Open in IMG/M
3300015372|Ga0132256_100587341Not Available1228Open in IMG/M
3300015373|Ga0132257_100341073Not Available1809Open in IMG/M
3300015373|Ga0132257_104125367Not Available528Open in IMG/M
3300017792|Ga0163161_11484229Not Available595Open in IMG/M
3300017927|Ga0187824_10374613Not Available516Open in IMG/M
3300017936|Ga0187821_10331329All Organisms → cellular organisms → Bacteria → Proteobacteria611Open in IMG/M
3300019356|Ga0173481_10008200All Organisms → cellular organisms → Bacteria2885Open in IMG/M
3300019361|Ga0173482_10000143All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria11030Open in IMG/M
3300019361|Ga0173482_10385343All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria647Open in IMG/M
3300019362|Ga0173479_10004195All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria3401Open in IMG/M
3300019362|Ga0173479_10048774Not Available1379Open in IMG/M
3300022889|Ga0247785_1005806Not Available1217Open in IMG/M
3300023062|Ga0247791_1077424Not Available547Open in IMG/M
3300025899|Ga0207642_10182015Not Available1146Open in IMG/M
3300025910|Ga0207684_10680254Not Available875Open in IMG/M
3300025932|Ga0207690_10292662All Organisms → cellular organisms → Bacteria → Proteobacteria1272Open in IMG/M
3300025934|Ga0207686_10761408All Organisms → cellular organisms → Bacteria774Open in IMG/M
3300026035|Ga0207703_10166726Not Available1934Open in IMG/M
3300026067|Ga0207678_11017440Not Available733Open in IMG/M
3300026075|Ga0207708_11691458All Organisms → cellular organisms → Bacteria → Proteobacteria556Open in IMG/M
3300026078|Ga0207702_11008290Not Available826Open in IMG/M
3300026452|Ga0256821_1035263Not Available567Open in IMG/M
3300026720|Ga0207440_101813Not Available609Open in IMG/M
3300026759|Ga0207527_100964Not Available903Open in IMG/M
3300026784|Ga0207453_100586All Organisms → cellular organisms → Bacteria853Open in IMG/M
3300026995|Ga0208761_1000551All Organisms → cellular organisms → Bacteria1767Open in IMG/M
3300027401|Ga0208637_1004829All Organisms → cellular organisms → Bacteria → Proteobacteria1228Open in IMG/M
3300027543|Ga0209999_1014500Not Available1433Open in IMG/M
3300027617|Ga0210002_1002494All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae2658Open in IMG/M
3300027682|Ga0209971_1026547All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales1384Open in IMG/M
3300027765|Ga0209073_10307253All Organisms → cellular organisms → Bacteria → Proteobacteria630Open in IMG/M
3300027821|Ga0209811_10019500All Organisms → cellular organisms → Bacteria2212Open in IMG/M
3300027866|Ga0209813_10098842Not Available990Open in IMG/M
3300027876|Ga0209974_10145035All Organisms → cellular organisms → Bacteria → Proteobacteria854Open in IMG/M
3300027907|Ga0207428_11107465Not Available553Open in IMG/M
3300028379|Ga0268266_11709980Not Available604Open in IMG/M
3300028380|Ga0268265_10088397All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria2468Open in IMG/M
(restricted) 3300031150|Ga0255311_1002180All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium3632Open in IMG/M
3300031226|Ga0307497_10004675All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria3598Open in IMG/M
3300031716|Ga0310813_10094460All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria2312Open in IMG/M
3300031740|Ga0307468_100085476All Organisms → cellular organisms → Bacteria1816Open in IMG/M
3300031740|Ga0307468_100379781Not Available1068Open in IMG/M
3300031820|Ga0307473_11157850Not Available573Open in IMG/M
3300031908|Ga0310900_11741970Not Available529Open in IMG/M
3300032180|Ga0307471_100662353Not Available1207Open in IMG/M
3300032205|Ga0307472_100131345All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria1792Open in IMG/M
3300033004|Ga0335084_10208658All Organisms → cellular organisms → Bacteria → Proteobacteria2028Open in IMG/M
3300033513|Ga0316628_100168598All Organisms → cellular organisms → Bacteria → Proteobacteria2589Open in IMG/M
3300034667|Ga0314792_015735All Organisms → cellular organisms → Bacteria1355Open in IMG/M

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).


 ⦗Top⦘

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil13.77%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil8.70%
Terrestrial SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil7.97%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil5.07%
Corn, Switchgrass And Miscanthus RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere5.07%
Arabidopsis RhizosphereHost-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere4.35%
Agricultural SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil3.62%
Hardwood Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil3.62%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil3.62%
Arabidopsis Thaliana RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere3.62%
Populus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere3.62%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil2.90%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Soil2.17%
Miscanthus RhizosphereHost-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Miscanthus Rhizosphere2.17%
Switchgrass RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere2.17%
Switchgrass RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere2.17%
Corn RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere2.17%
Freshwater SedimentEnvironmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment1.45%
Surface SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil1.45%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil1.45%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural → Soil1.45%
SoilEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Soil1.45%
Corn RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere1.45%
Populus EndosphereHost-Associated → Plants → Roots → Bulk Soil → Unclassified → Populus Endosphere1.45%
WetlandEnvironmental → Aquatic → Freshwater → Sediment → Unclassified → Wetland0.72%
SedimentEnvironmental → Aquatic → Freshwater → Wetlands → Sediment → Sediment0.72%
Natural And Restored WetlandsEnvironmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands0.72%
Switchgrass RhizosphereEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Switchgrass Rhizosphere0.72%
Sugarcane Root And Bulk SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Sugarcane Root And Bulk Soil0.72%
Natural And Restored WetlandsEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Natural And Restored Wetlands0.72%
Switchgrass RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere0.72%
Sandy SoilEnvironmental → Terrestrial → Soil → Sand → Unclassified → Sandy Soil0.72%
Tabebuia Heterophylla RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere0.72%
Miscanthus RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere0.72%
Arabidopsis RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Rhizosphere0.72%
Corn, Switchgrass And Miscanthus RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere0.72%
Switchgrass RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere0.72%
Miscanthus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere0.72%
Corn RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere0.72%
RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere0.72%
Miscanthus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere0.72%
Arabidopsis RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere0.72%

Visualization
Powered by ApexCharts



Associated Samples

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Taxon OIDSample NameHabitat TypeIMG/M Link
2228664021Soil microbial communities from Great Prairies - Iowa, Continuous Corn soilEnvironmentalOpen in IMG/M
3300000787Soil microbial communities from Great Prairies - Iowa, Continuous Corn soilEnvironmentalOpen in IMG/M
3300001139Soil microbial communities from Great Prairies - Wisconsin, Switchgrass soilEnvironmentalOpen in IMG/M
3300001915Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C7Host-AssociatedOpen in IMG/M
3300002459Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6Host-AssociatedOpen in IMG/M
3300003324Sugarcane bulk soil Sample H2EnvironmentalOpen in IMG/M
3300003911Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1Host-AssociatedOpen in IMG/M
3300004114Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5EnvironmentalOpen in IMG/M
3300004156Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 1EnvironmentalOpen in IMG/M
3300004463Combined assembly of Arabidopsis thaliana microbial communitiesHost-AssociatedOpen in IMG/M
3300004479Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAsEnvironmentalOpen in IMG/M
3300005093Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of KBS All BlocksEnvironmentalOpen in IMG/M
3300005104Soil and rhizosphere microbial communities from Laval, Canada - mgHACEnvironmentalOpen in IMG/M
3300005162Soil and rhizosphere microbial communities from Laval, Canada - mgLABEnvironmentalOpen in IMG/M
3300005163Soil and rhizosphere microbial communities from Laval, Canada - mgHMBEnvironmentalOpen in IMG/M
3300005164Soil and rhizosphere microbial communities from Laval, Canada - mgLACEnvironmentalOpen in IMG/M
3300005204Wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Sandmound_TuleA_D2EnvironmentalOpen in IMG/M
3300005276Arabidopsis rhizosphere microbial communities from the University of North Carolina - sample Mutant cpr5Host-AssociatedOpen in IMG/M
3300005290Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 1: eDNA_1Host-AssociatedOpen in IMG/M
3300005293Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Bulk Soil Replicate 1 : eDNA_1Host-AssociatedOpen in IMG/M
3300005295Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL3EnvironmentalOpen in IMG/M
3300005332Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)EnvironmentalOpen in IMG/M
3300005340Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaGEnvironmentalOpen in IMG/M
3300005367Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaGHost-AssociatedOpen in IMG/M
3300005406Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-1 metaGEnvironmentalOpen in IMG/M
3300005434Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaGEnvironmentalOpen in IMG/M
3300005440Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaGEnvironmentalOpen in IMG/M
3300005455Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaGHost-AssociatedOpen in IMG/M
3300005529Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen16_06102014_R1EnvironmentalOpen in IMG/M
3300005536Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaGEnvironmentalOpen in IMG/M
3300005547Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-3 metaGEnvironmentalOpen in IMG/M
3300005548Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaGHost-AssociatedOpen in IMG/M
3300005713Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)EnvironmentalOpen in IMG/M
3300005764Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)EnvironmentalOpen in IMG/M
3300005841Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2Host-AssociatedOpen in IMG/M
3300006042Populus root and rhizosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3Host-AssociatedOpen in IMG/M
3300006755Agricultural soil microbial communities from Georgia to study Nitrogen management - GA PlitterEnvironmentalOpen in IMG/M
3300006806Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100EnvironmentalOpen in IMG/M
3300006854Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4Host-AssociatedOpen in IMG/M
3300006871Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3Host-AssociatedOpen in IMG/M
3300006954Agricultural soil microbial communities from Georgia to study Nitrogen management - GA ControlEnvironmentalOpen in IMG/M
3300009094Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2)Host-AssociatedOpen in IMG/M
3300009111Wetland microbial communities from Old Woman Creek Reserve in Ohio, USA - Mud_0915_D1EnvironmentalOpen in IMG/M
3300009147Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)Host-AssociatedOpen in IMG/M
3300010046Tropical forest soil microbial communities from Panama - MetaG Plot_36EnvironmentalOpen in IMG/M
3300010358Tropical forest soil microbial communities from Panama - MetaG Plot_3EnvironmentalOpen in IMG/M
3300010359Tropical forest soil microbial communities from Panama - MetaG Plot_15EnvironmentalOpen in IMG/M
3300010362Tropical forest soil microbial communities from Panama - MetaG Plot_22EnvironmentalOpen in IMG/M
3300010371Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-1EnvironmentalOpen in IMG/M
3300010373Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-4EnvironmentalOpen in IMG/M
3300010375Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaGHost-AssociatedOpen in IMG/M
3300010396Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-2EnvironmentalOpen in IMG/M
3300010397Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-4EnvironmentalOpen in IMG/M
3300010399Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-3EnvironmentalOpen in IMG/M
3300010401Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-1EnvironmentalOpen in IMG/M
3300012515Arabidopsis rhizosphere microbial communities from North Carolina - M.Col.7.yng.070610Host-AssociatedOpen in IMG/M
3300012899Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S058-202B-2EnvironmentalOpen in IMG/M
3300012905Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S013-104B-2EnvironmentalOpen in IMG/M
3300012906Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S212-509R-1EnvironmentalOpen in IMG/M
3300012909Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S149-409B-1EnvironmentalOpen in IMG/M
3300012913Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S043-104R-2EnvironmentalOpen in IMG/M
3300012951Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_226_MGEnvironmentalOpen in IMG/M
3300012958Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_221_MGEnvironmentalOpen in IMG/M
3300012960Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_231_MGEnvironmentalOpen in IMG/M
3300012985Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_246_MGEnvironmentalOpen in IMG/M
3300012989Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_237_MGEnvironmentalOpen in IMG/M
3300013308Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaGHost-AssociatedOpen in IMG/M
3300014299Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Browns_TuleC_D1EnvironmentalOpen in IMG/M
3300014497Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-129_1 metaGHost-AssociatedOpen in IMG/M
3300015201Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S014-104B-1 (version 2)EnvironmentalOpen in IMG/M
3300015371Combined assembly of cpr5 and col0 rhizosphere and soilHost-AssociatedOpen in IMG/M
3300015372Soil combined assemblyHost-AssociatedOpen in IMG/M
3300015373Combined assembly of cpr5 rhizosphereHost-AssociatedOpen in IMG/M
3300017792Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaGHost-AssociatedOpen in IMG/M
3300017927Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SourceSoil_4EnvironmentalOpen in IMG/M
3300017936Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SourceSoil_1EnvironmentalOpen in IMG/M
3300019356Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S073-202C-2 (version 2)EnvironmentalOpen in IMG/M
3300019361Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S133-311R-2 (version 2)EnvironmentalOpen in IMG/M
3300019362Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S104-311B-1 (version 2)EnvironmentalOpen in IMG/M
3300022889Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S096-311B-4EnvironmentalOpen in IMG/M
3300023062Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S081-202R-4EnvironmentalOpen in IMG/M
3300025899Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300025910Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025932Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025934Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300026035Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300026067Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300026075Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300026078Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300026452Sediment microbial communities from tidal freshwater marsh on Altamaha River, Georgia, United States - 7-17 PU4EnvironmentalOpen in IMG/M
3300026720Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G10A2w-12 (SPAdes)EnvironmentalOpen in IMG/M
3300026759Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G10A3w-12 (SPAdes)EnvironmentalOpen in IMG/M
3300026784Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G01.2K2-12 (SPAdes)EnvironmentalOpen in IMG/M
3300026995Soil and rhizosphere microbial communities from Laval, Canada - mgLAB (SPAdes)EnvironmentalOpen in IMG/M
3300027390Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G10A1-11 (SPAdes)EnvironmentalOpen in IMG/M
3300027401Soil and rhizosphere microbial communities from Laval, Canada - mgLAC (SPAdes)EnvironmentalOpen in IMG/M
3300027543Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M1 AM (SPAdes)Host-AssociatedOpen in IMG/M
3300027617Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M2 S AM (SPAdes)Host-AssociatedOpen in IMG/M
3300027682Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M3 S AM (SPAdes)Host-AssociatedOpen in IMG/M
3300027765Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100 (SPAdes)EnvironmentalOpen in IMG/M
3300027821Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire. - Coalmine Soil_Cen17_06102014_R1 (SPAdes)EnvironmentalOpen in IMG/M
3300027866Populus root and rhizosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 (SPAdes)Host-AssociatedOpen in IMG/M
3300027876Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M3 S PM (SPAdes)Host-AssociatedOpen in IMG/M
3300027907Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes)Host-AssociatedOpen in IMG/M
3300028379Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300028380Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300031150 (restricted)Sandy soil microbial communities from University of British Columbia, Vancouver, Canada - EtOH4_T0_E4EnvironmentalOpen in IMG/M
3300031226Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 10_SEnvironmentalOpen in IMG/M
3300031716Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - YN3EnvironmentalOpen in IMG/M
3300031740Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05EnvironmentalOpen in IMG/M
3300031820Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_515EnvironmentalOpen in IMG/M
3300031908Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C24D1EnvironmentalOpen in IMG/M
3300032180Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515EnvironmentalOpen in IMG/M
3300032205Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05EnvironmentalOpen in IMG/M
3300033004Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.4EnvironmentalOpen in IMG/M
3300033513Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_M2_C1_D5_CEnvironmentalOpen in IMG/M
3300034667Metatranscriptome of lab incibated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C8R1 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M

Geographical Distribution
Zoom:     Powered by OpenStreetMap


 ⦗Top⦘

Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID Sample Taxon ID Habitat Sequence
ICCgaii200_087547822228664021SoilMEAVVGKSLWDDPWFFAAVAPNDGKEQSELCPVTGYACEGDLSYLCEEYGCARKGGLSPRSEENF
JGI11643J11755_1154865523300000787SoilMEAVVGKSLWDDPWFFAAVAPNDGKEQSELCPVTGYACEGDLSYLCEEYGCARKGGLSPRSEENF*
JGI10220J13317_1106454423300001139SoilRRMEAVVGKSLWEDPWFFAAVAPNGGQEQREPCPVTGYACEGDLSYLCEEYGCARKGGLSPRSEENF*
JGI24741J21665_101657423300001915Corn RhizosphereSLWEDPWFFAAVAPNGGQEQREPCPVTGYACEGDLSYLCEEYGCARKGGLSPRSEENF*
JGI24751J29686_1009850913300002459Corn, Switchgrass And Miscanthus RhizosphereEAVVGKSLWEDPWFFAAVAPNGGQEQREPCPVTGYACEGDLSYLCEEYGCARKGGLSPRSEENF*
soilH2_1021534253300003324Sugarcane Root And Bulk SoilMETKVGKSLWENPWFFVTPADGDRPELCPVTGYPCEGDLSYLCEDYGCARKGGLSPQSEESF*
JGI25405J52794_1003136233300003911Tabebuia Heterophylla RhizosphereVGKSLWENPWFFATVAPNNGQVQCELCPVTGYACEGDLSHLCEEYGCARKGGLSPRSEENF*
Ga0062593_10062797323300004114SoilMGKSLWEDPWFFAAAAPGDGTEQREPCPVTGYACEGDLSYLCEEYGCARKGGLSPRSEENF*
Ga0062593_10100685533300004114SoilVGKSLWEDPWFFAAVAPGGGQEQCELCPVTGYACEGDLSYLCEEFGCARKGGLSPRSEENF*
Ga0062593_10144900923300004114SoilVGKCLWDDPWFFAAVAPNDGQEQSELCPVTGYACEGDLSYLCEEYGCARKGGLSPRSEENF*
Ga0062589_10217133823300004156SoilGKSLWEDPWFFAAAAPGDGTEQREPCPVTGYACEGDLSYLCEEYGCARKGGLSPRSEENF
Ga0063356_10652202713300004463Arabidopsis Thaliana RhizosphereMEAVVGKSLWEDPWFFAAVAPGGGQEQCELCPVTGYACEGDLSYLCEEFGCARKGGLSPRSEENF*
Ga0062595_10208656623300004479SoilRRMEAVVGKSLWEDPWFFAATAPNDGQEQRELCPVTGYACEGDLSYLCEEYGCARKGGLSPRSEENF*
Ga0062594_10138471123300005093SoilMEAVVAKSLWEDPWFFAAVAPNDGQEQRELCPVTGYACEGDLSHLCEEYGCARKGGLSPRSEENF*
Ga0062594_10237257823300005093SoilEAVMGKSLWEDPWFFAAAAPGDGTEQREPCPVTGYACEGDLSYLCEEYGCARKGGLSPRSEENF*
Ga0062594_10289358513300005093SoilMEAVVGKCLWDDPWFFAAVAPNDGQEQSELCPVTGYACEGDLSYLCEEYGCARKGGLSPRSEENF*
Ga0066818_100640423300005104SoilMEAVVGKSLWEDPWFFAAVAPNDGQVQCELCPVTGYACEGDLSHLCEEYGCARKGGLSPRSEDNF*
Ga0066814_1000271023300005162SoilMEAVVGKSLWEDPWFFAATAPNHGQEQRELCPVTGYACEGDLSYLCEEYGCARKGGLSPRSEENF*
Ga0066823_1006594923300005163SoilWEDPWFFAATAPNHGQEQGELCPVNGYACEGDLSYLCEEYGCARKGGLSPRSEENF*
Ga0066815_1010334513300005164SoilMEAVVGKSLWEDPWFFAAAAPNDGQEQRELCPVTGYACEGDLSHLCEEYGCARKGGLSPCSEENF*
Ga0066815_1012680023300005164SoilAVVGKSLWEDPWFFAAVAPNDGQVQCELCPVTGYACEGDLSHLCEEYGCARKGGLSPRSEENF*
Ga0068997_1004643823300005204Natural And Restored WetlandsVAKSLWEDPWFFAAVAPSDGQEQRELCPVTGYACEGDLSYLCEEYGCARKGGLSPRSEENF*
Ga0065717_100904523300005276Arabidopsis RhizosphereMEAVVGKSLWEDPWFFAATAPNDGQEQRELCPVTGYACEGDLSYLCEEYGCARKGGLSPRSEENF*
Ga0065712_1000079623300005290Miscanthus RhizosphereVGKSLWEDPWFFAATAPNEGQEQRELCPVTGYACEGDLSYLCEEYGCARKGGLSPRSEENF*
Ga0065712_1015164623300005290Miscanthus RhizosphereMEAVVGKSLWEDPWFFAAVAPNGGQEQREPCPVTGYACEGDLSYLCEEYGCARKGGLSPRSEENF*
Ga0065715_1000214723300005293Miscanthus RhizosphereMEAVVGKSLWEDPWFFAATAPXXGQEQRELCPVTGYACEGDLSYLCEEYGCARKGGLSPRSEENF*
Ga0065707_1014621043300005295Switchgrass RhizosphereVGKSLWEDPWFFAATAPNDGQEQRELCPVTGYACEGDLSYLCEEYGCARKGGLSPRSEENF*
Ga0066388_10121378723300005332Tropical Forest SoilMTAMEAVVRKSLWEDPWFFATVVPNNGQAQSELCPITGYACEGDLSHLCEEFGCARKGGLSPRSEENF*
Ga0066388_10133967813300005332Tropical Forest SoilMEAVVAKSLWEDPWFFAAGAPNSGQVQAELCPVTGYACEGDLSHLCEEYGCARKGGLSPRSEENF*
Ga0066388_10454330213300005332Tropical Forest SoilLEAVVGKSLWEDPWFFATVAPNNGQVQSDLCPVTGYACEGDLSHLCEEYGCARKGGLSPRSEENF*
Ga0070689_100000335183300005340Switchgrass RhizosphereVGKSLWEDPWFFAAVAPNGGQEQREPCPVTGYACEGDLSYLCEEYGCARKGGLSPRSEENF*
Ga0070667_10029229333300005367Switchgrass RhizosphereMEAVVGKSLWEDPWFFAATASNDGQEQRELCPVTGYACEGDLSYLCEEYGCARKGGLSPRSEENF*
Ga0070703_1003142423300005406Corn, Switchgrass And Miscanthus RhizosphereMEAVVGKSLWEDPWFFAATAPNEGQEQRELCPVTGYACEGDLSYLCEEYGCARKGGLSPRSEENF*
Ga0070709_1023842833300005434Corn, Switchgrass And Miscanthus RhizosphereLKREFVEAAVGKSLWEDPWFFAATPDREEEPRSLCPITGYPCDGDLSYLCREYGCARKGGLSPWSEENF*
Ga0070705_10009790923300005440Corn, Switchgrass And Miscanthus RhizosphereMEAVVGKCLWDDPWFFAAVAPNGGQEQSELCPVTGYACEGDLSYLCEEYGCARKGGLSPRSEENF*
Ga0070663_10079713613300005455Corn RhizosphereMEAVMGKSLWEDPWFFAAAAPGDGTEQREPCPVTGYACEGDLSYLCEEYGCARKGGLSPRSEENF*
Ga0070741_1007860133300005529Surface SoilVGKSLWENPWFFAAIPPGEELPEVCPVTGYPCEGDLSYMCEEYGCARKGGLSPRSEDNF*
Ga0070697_10012474113300005536Corn, Switchgrass And Miscanthus RhizosphereMEAVVGKSLWEDPWFFAAAAPGDGTEQREPCPVTGYACEGDLSYLCEEYGCARKGGLSPRSEENF*
Ga0070693_10045547623300005547Corn, Switchgrass And Miscanthus RhizosphereMEAAVAKSLWEDPWFFAASPPAEGAAQHELCPITGYACEGDLSYLCEEYGCARKGGLSPCSEENF*
Ga0070665_10004948013300005548Switchgrass RhizosphereKSLWEDPWFFAAVAPNGGQEQREPCPVTGYACEGDLSYLCEEYGCARKGGLSPRSEENF*
Ga0066905_10023819023300005713Tropical Forest SoilVGKSLWEDPWFFATVAPNNGQVQSDLCPVTGYACEGDLSHLCEEYGCARKGGLSPRSEENF*
Ga0066903_10264185733300005764Tropical Forest SoilMTAMEAVVGKSLWEDPWFFATVVPNNGQAQSELCPITGYACEGDLSHLCEEFGCARKGGLSPRSEENF*
Ga0068863_10127642023300005841Switchgrass RhizosphereMARWIPIETGPMTAYSDWRRTEAVMGKSLWEDPWFFAAAAPGDGTEQREPCPVTGYACEGDLSYLCEEYGCARKGGLSPRSEENF*
Ga0075368_1016912723300006042Populus EndosphereMEAVVGKSLWEDPWFFATVALDNGQVQSELCPVTGYACEGDLSYLCEEYGCARKGGLSPRSEENF*
Ga0079222_1158444213300006755Agricultural SoilPWFFAATPDREEEPRSLCPITGYPCDGDLSYLCREYGCARKGGLSPWSEENF*
Ga0079220_1036911823300006806Agricultural SoilVGKSLWEDPWFFAAGPANDVQGQRELCPVTGYACEGDLSYLCEEYGCARKGGLSPCSEENF*
Ga0079220_1099356323300006806Agricultural SoilLAQSLWEDPWFFAAVPDADRELQLCPITGYPCDGDLSHLCEEFGCARKGGLSPRSEENF*
Ga0075425_10000998893300006854Populus RhizosphereVGKSLWEDPWFFATVASDNGQVQSELCPVTGYACEGDLSYLCEEYGCARKGGLSPRSEENF*
Ga0075434_10097477823300006871Populus RhizosphereVGKSLWEDPWFFATVALDNGQVQSELCPVTGYACEGDLSYLCEEYGCARKGGLSPRSEENF*
Ga0079219_1032070113300006954Agricultural SoilMSLLEAVVGKSLWEDPWFFATAAPQNGQGLPELCPVTGYACEGDLSHLCEEYGCARKGGLSPRSDENF*
Ga0111539_1038673023300009094Populus RhizosphereMGKSLWEDPWFFAAVAPNDGQETCPVTGYACEGDLSYLCEEYGCARKGGLSPRSEENF*
Ga0115026_1100405413300009111WetlandMEAVVAKSLWEDPWFFEAVAPNDGQEQRELCPVTGYACEGDLSYLCEEYGCARKGGLSPRSEENF*
Ga0114129_1195640213300009147Populus RhizosphereMEAVVGKSLWDDPWFFAAVAPNDGKEQSELCPVTGYACEGDLSYLCEEYGCARKG
Ga0126384_1043800323300010046Tropical Forest SoilMEAVVGKSLWEDPWFFATLAPNNGQVPSELCPVTGYACEGDLSHLCEEFGCARKGGLSPRSEENF*
Ga0126370_1111519313300010358Tropical Forest SoilDRSYDRIFRLTTVKEALVGKSLWEDPWFFATVVPNGGQAQSELCPVTGYACEGDLSHLCEEFGCARKGGLSPRSEENF*
Ga0126376_1143990123300010359Tropical Forest SoilMEAVVAKSLWEDPWFFAAGAPNCGQVQAELCPVTGYACEGDLSHLCEEYGCARKGGLSPRSEENF*
Ga0126377_1014299023300010362Tropical Forest SoilVAKQLVSLETMTAMEAVVGKSLWEDPWFFATAVPNDGQVQPEKCPVTGYACEGDLSYLCEEFGCARKGGLSPRSEENF*
Ga0134125_1123222223300010371Terrestrial SoilLKREFVEAAVGKSLWEDPWFFAAAPDREDGSHTHCPITGYPCDGDLSHLCQEYGCARKGGLSPRSEENF*
Ga0134125_1295576323300010371Terrestrial SoilMEAVVAKSLWEDPWFFAAIAPNGGQEQRELCPVTGYACEGDLSYLCEEYGCARKGGLSPRSEENF*
Ga0134125_1308672123300010371Terrestrial SoilMGKSLWEDPWFFAAATPQNCQELCPVTGYPCEGDLSYLCEEYGCARKGGLSPRSDENF*
Ga0134128_1000543333300010373Terrestrial SoilVEAAVGKSLWEDPWFFAAAPDRAEESHTLCPITGYLCDGDLSHLCREYGCARKGGLSPRSEENF*
Ga0105239_1062651713300010375Corn RhizosphereKSLWEDPWFFAAVAPNDGQEQRELCPVTGYACEGDLSHLCEEYGCARKGGLSPRSEENF*
Ga0134126_1008103143300010396Terrestrial SoilVGKSLWEDPWFFAAAPDRAEESHTLCPITGYPCDGDLSHLCREYGCARKGGLSPRSEENF
Ga0134126_1077717713300010396Terrestrial SoilMEAAVAKSLWEDPWFFAASPPAEGAAQHELCPITGYACEGDLSYLCEEYGCARKGGLSPC
Ga0134126_1132984423300010396Terrestrial SoilLAQSLWEDPWFFAAMPEADRELQLCPITGYPCDGDLSHLCEEFGCARKGGLSPRSEENC*
Ga0134124_1254798023300010397Terrestrial SoilMEAVVGKSLWEDPWFFAAVAPGGGQEQSELCPVTGYACEGDLSYLCEEYGCARKGGLSPRSEENF*
Ga0134127_1096798333300010399Terrestrial SoilMEAVVGKSLWEDPWFFAATAPNDGQEQRELCPVTGYACEGDLSYLCEEYGCARKGGLSPRSEEN
Ga0134127_1127026713300010399Terrestrial SoilMEAVVGKSLWEDPWFFAATAPNEGQEQRELCPVTGYACEGDLSYLCEEYGCARKGGLSPRSEEN
Ga0134121_1257143123300010401Terrestrial SoilMEAVVAKSLWEDPWFFAAVAPGGGQEQCELCPVTGYACEGDLSYLCEEFGCARKGGLSP
Ga0157338_100073633300012515Arabidopsis RhizosphereMEAVVGKSLWEDPWFFAATAPNDGQDQRELCPVTGYACEGDLSYLCEEYGCARKGGLSPRSEENF*
Ga0157299_1000765623300012899SoilMEAVVGKSLWEDPWFFAAVAPNDGQERRELCPVTGYACEGDLSYLCEEYGCARKGGLSPRSEENF*
Ga0157296_1017351523300012905SoilKCLWDDPWFFAAVAPNDGQEHSELCPVTGYACEGDLSYLCEEYGCARKGGLSPRSEENF*
Ga0157295_1000053343300012906SoilMEAVVAKSLWEDPWFFAAVAPNGGQEQREPCPVTGYACEGDLSYLCEEYGCARKGGLSPRSEENF*
Ga0157295_1000827523300012906SoilMEAVVGKSLWEDPWFFAALAPNGGQEQREPCPVTGYACEGDLSYLCEEYGCARKGGLSPRSEENF*
Ga0157290_1010825913300012909SoilRAGVAAAAVAPNGGQEQREPCPVTGYACEGDLSYLCEEYGCARKGGLSPRSEENF*
Ga0157298_1001888823300012913SoilMEAVVGKSLWEDPWFFAATAPNDGQEQRELCPVTGYACEGNLSYLCEEYGCARKGGLSPRSEENF*
Ga0164300_1000240453300012951SoilWRRMEAVVGKSLWEDPWFFAAVAPNGGQEQREPCPVTGYACEGDLSYLCEEYGCARKGGLSPRSEENF*
Ga0164299_1007446323300012958SoilMEGVVGKSLWEDPWFFAATAPNDGQEQRELCPVTGYACEGDLSYLCEEYGCARKGGLSPRSEENF*
Ga0164301_1005042923300012960SoilMEAVVGKSLWEDPWFFAATAPNDGQEQRELCPVTGYACEGDLSYLCEEYGCARKGGLSPRSEENV*
Ga0164308_1156500913300012985SoilMEAVVGKSLWEDPRFFAATAPNDGQEQRELCPVTGYACEGDLSYLCEEYGCARKGGLSPRSEENF*
Ga0164305_10000077103300012989SoilMEAVVGKSLWEDPWFFAAVAPNGGQEQREPCPGTGYACEGDLSYLCEEYGCARKGGLSPRSEENF*
Ga0157375_1188221913300013308Miscanthus RhizosphereMEAAVAKSLWEDPWFFAASPPAEGAAQHELCPITGYACEGDLSYLCEEYGCARKGGLSPRSEENF*
Ga0075303_100801433300014299Natural And Restored WetlandsLWEDPWFFVAVAPSDGQEQRELCPVTGYACEGDLSYLCEEYGCARKGGLSPRSEENF*
Ga0182008_1049990523300014497RhizosphereMEAAVAKSLWEDPWFFAASPPAEGTAQHELCPITGYACEGDLSYLCEEYGCARKGGLSPCSEENF*
Ga0173478_1000292913300015201SoilMEAVVGKSLWEDPWFFAATAPNDGQEQRELCPVTGYACEGDLSYLCEEYGCARKG
Ga0132258_1006401893300015371Arabidopsis RhizosphereMETVVGKSLWEDPWFFATVAPNNGQAQSELCPITGYACEGDLSYLCEEYGCARKGGLSPRSEENF*
Ga0132258_1086707413300015371Arabidopsis RhizosphereMEAVMGKSLWEDPWFFAAVAPGGDTEQREPCPVTGYACEGDLSYLCEEYGCARKGGLSPRSEENF*
Ga0132258_1364667623300015371Arabidopsis RhizosphereMEAVVGKSLWEDPWFFAAVAPNDGREQRELCPVTGYACEGDLSYLCEEYGCARKGGLSPRSEDNF*
Ga0132256_10058734123300015372Arabidopsis RhizosphereMEALVAKSLWEDPWFFAAVAPNGGQEQREPCPVTGYACEGDLSYLCEEYGCARKGGLSPRSEENF*
Ga0132257_10034107313300015373Arabidopsis RhizosphereMEALVAKSLWEDPWFFAALAPNGGQEQREPCPVTGYACEGDLSYLCEEYGCARKGGLSPRSEENF*
Ga0132257_10412536713300015373Arabidopsis RhizosphereMEAVVGKSLWEDPWFFAAGPANDVQGQRELCPVTGYACEGDLSYLCEEYGCARKGGLSPCSEENF*
Ga0163161_1148422923300017792Switchgrass RhizosphereVGKSLWEDPWFFAATAPNDGQEQRELCPVTGYACEGDLSYLCEEYGCARKGGLSPRSEEN
Ga0187824_1037461323300017927Freshwater SedimentLKREFVEAAVGKSLWEDPWFFAAAPSLEDEAHTLCPITGYPCDGDLSHLCQEYGCARKGGLSPRSEENF
Ga0187821_1033132923300017936Freshwater SedimentVGKSLWEDPWFFAAAPSLEDEAHTLCPITGYPCDGDLSHLCQEYGCARKGGLSPRSEENF
Ga0173481_1000820023300019356SoilVGKSLWEDPWFFAAVAPNGGQEQREPCPVTGYACEGDLSYLCEEYGCARKGGLSPRSEEN
Ga0173482_10000143103300019361SoilVGKSLWEDPWFFAATAPNEGQEQRELCPVTGYACEGDLSYLCEEYGCARKGGLSPRSEEN
Ga0173482_1038534323300019361SoilMEAVVGKSLWEDPWFFAAVAPGGGQEQCELCPVTGYACEGDLSYLCEEFGCARKGGLSPRSEENF
Ga0173479_1000419513300019362SoilMEAVVGKSLWEDPWFFAAVAPNGGQEQREPCPVTGYACEGDLSYLCEEYGCARKGGLSPRSEENF
Ga0173479_1004877423300019362SoilMEAVVGKSLWEDPWFFAATAPNEGQEQRELCPVTGYACEGDLSYLCEEYGCARKGGLSPRSEENF
Ga0247785_100580623300022889SoilMEAVVGKSLWEDPWFFAATAPNDGQEQRELCPVTGYACEGDLSYLCEEYGCARKGGLSPRSEENF
Ga0247791_107742413300023062SoilMEAVVAKSLWEDPWFFAAVAPNDGQEQRELCPVTGYACEGDLSHLCEEYGCARKGGLSPRSEENF
Ga0207642_1018201513300025899Miscanthus RhizosphereRRMEAVVGKSLWEDPWFFAATAPNDGQEQRELCPVTGYACEGDLSYLCEEYGCARKGGLSPRSEENF
Ga0207684_1068025413300025910Corn, Switchgrass And Miscanthus RhizosphereRMEAVVGKCLWDDPWFFAAVAPNDGQEQSELCPVTGYACEGDLSYLCEEYGCARKGGLSPRSEENF
Ga0207690_1029266223300025932Corn RhizosphereVAKSLWEDPWFFAAVAPNDGQEQRELCPVTGYACEGDLSHLCEEYGCARKGGLSPRSEEN
Ga0207686_1076140813300025934Miscanthus RhizosphereMEAVVGKSLWEDPWFFAATASNDGQEQRELCPVTGYACEGDLSYLCEEYGCARKGGLSPRSEENF
Ga0207703_1016672623300026035Switchgrass RhizosphereRMEAVVGKSLWEDPWFFAATAPNDGQEQRELCPVTGYACEGDLSYLCEEYGCARKGGLSPRSEENF
Ga0207678_1101744023300026067Corn RhizosphereRRMEAAVAKSLWEDPWFFAASPPAEGAAQHELCPITGYACEGDLSYLCEEYGCARKGGLSPCSEENF
Ga0207708_1169145813300026075Corn, Switchgrass And Miscanthus RhizosphereMEAVVAKSLWEDPWFFAAVAPNDGQEQRELCPVTGYACEGDLSHLCEEYGCARKGGLSP
Ga0207702_1100829023300026078Corn RhizosphereDPWFFAAAAPGDGTEQREPCPVTGYACEGDLSYLCEEYGCARKGGLSPRSEENF
Ga0256821_103526323300026452SedimentVAKSLWEDPWFFAAGALSDGQEQRELCPVTGYACEGDLSYLCVEYGCARKGGLSPRSEEN
Ga0207440_10181313300026720SoilVGKSLWEDPWFFAAVAPNDGQEQSELCPVTGYACEGDLSYLCEEYGCARKGGLSPRSEEN
Ga0207527_10096423300026759SoilGKSLWEDPWFFAAVAPNGGQEQREPCPVTGYACEGDLSYLCEEYGCARKGGLSPRSEENF
Ga0207453_10058623300026784SoilMEAVVGKSLWEDPWFFAAVAPNGGQEQREPCPVTGYACEGDLSYLCEEYGCARKGG
Ga0208761_100055133300026995SoilVGKSLWEDPWFFAATAPNHGQEQRELCPVTGYACEGDLSYLCEEYGCARKGGLSPRSEEN
Ga0207435_10484113300027390SoilWFFAAVAPNGGQEQREPCPVTGYACEGDLSYLCEEYGCARKGGLSPRSEENF
Ga0208637_100482923300027401SoilVGKSLWEDPWFFAAAAPNDGQEQRELCPVTGYACEGDLSHLCEEYGCARKGGLSPRSEEN
Ga0209999_101450013300027543Arabidopsis Thaliana RhizosphereMEAVVGKSLWDDPWFFAAVAPNDGQEQSELCPVTGYACEGDLSYLCEEYGCARKGGLSPRSEENF
Ga0210002_100249423300027617Arabidopsis Thaliana RhizosphereVGKSLWEDPWFFAAVAPNDGQEQRELCPVTGYICEGDLSYLCEEYGCARKGGLSPRSEEN
Ga0209971_102654723300027682Arabidopsis Thaliana RhizosphereVGKSLWDDPWFFAAVAPNDGKEQSELCPVTGYACEGDLSYLCEEYGCARKGGLSPRSEEN
Ga0209073_1030725323300027765Agricultural SoilLAQSLWEDPWFFAAVPDADRELQLCPITGYPCDGDLSHLCEEFGCARKGGLSPRSEENF
Ga0209811_1001950023300027821Surface SoilMEAVVGKSLWEDPWFFAAVAPNDGQVQCELCPVTGYACEGDLSHLCEEYGCARKGGLSPRSEDNF
Ga0209813_1009884243300027866Populus EndosphereMEAVVGKSLWEDPWFFATVALDNGQVQSELCPVTGYACEGDLSYLCEEYGCARKGGLSPRSEENF
Ga0209974_1014503513300027876Arabidopsis Thaliana RhizosphereMEAVVGKSLWEDPWFFAAVAPNDGQEQRELCPVTGYICEGDLSYLCEEYGCARKGG
Ga0207428_1110746523300027907Populus RhizosphereMGKSLWEDPWFFAAVAPNDGQETCPVTGYACEGDLSYLCEEYGCARKGGLSPRSEENF
Ga0268266_1170998023300028379Switchgrass RhizosphereMGKSLWEDPWFFAAAAPGDGTEQREPCPVTGYACEGDLSYLCEEYGCARKGGLSPRSEEN
Ga0268265_1008839743300028380Switchgrass RhizosphereVGKSLWEDPWFFAATASNDGQEQRELCPVTGYACEGDLSYLCEEYGCARKGGLSPRSEEN
(restricted) Ga0255311_100218023300031150Sandy SoilVGKSLWDDPWFFATVAPNDAQEQSELCPVTGYACEGDLSYLCEEYGCARKGGLSPRSEEN
Ga0307497_1000467533300031226SoilMEAVVGKSLWEDPWFFAATAPNDGQEQRELCPVTGYACEGDLSHLCEEYGCARKGGLSPRSEENF
Ga0310813_1009446023300031716SoilVGKSLWEDPWFFAAVAPSDGQEPRELCPVTGYPCEGDLSYLCEEYGCARKGGLSPRSEEN
Ga0307468_10008547623300031740Hardwood Forest SoilVGKSLWEDPWFFATVAPNNGQVQSELCPVTGYACEGDLSHLCEEYGCARKGGLSPRSEEN
Ga0307468_10037978113300031740Hardwood Forest SoilEAVVGKSLWEDPWFFATVAPNNGQVQSEPCPVTGYACEGDLSYLCEEYGCARKGGLSPRSEENF
Ga0307473_1115785023300031820Hardwood Forest SoilVGKSLWEDPWFFAAVVPNDGQEQSELCPVTGYACEGDLSHLCEEYGCARKGGLSPRSEEN
Ga0310900_1174197023300031908SoilVGKSLWEDPWFFAAVAPNDGQVQCELCPVTGYACEGDLSHLCEEYGCARKGGLSPRSEDN
Ga0307471_10066235313300032180Hardwood Forest SoilLEAVVGKSLWEDPWFFATVAPNNGQVQSEPCPVTGYACEGDLSYLCEEYGCARKGGLSPRSEENF
Ga0307472_10013134523300032205Hardwood Forest SoilMEAVVGKSLWEDPWFFATVASDNGQVPCELCPVTGYACEGDLSYLCEEYGCARKGGLSPRSEENF
Ga0335084_1020865823300033004SoilVAKSLWEDPWFFAAVAPNDGQEQRELCPVTGYACEGDLSYLCEEYGCARKGGLSPRSEEN
Ga0316628_10016859843300033513SoilVGKSLWEDPWFFATASPGDGRELPDLCPVTGYPCEGDLSYLCEEFGCARKGGLSPRSEEN
Ga0314792_015735_3_1853300034667SoilMGKSLWEDPWFFAATAPNDGQEQRELCPVTGYACEGDLSYLCEEYGCARKGGLSPRSEEN

 ⦗Top⦘


Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.