Metagenome / Metatranscriptome Family F065246

Basic Information
Family ID	F065246
Family Type	Metagenome / Metatranscriptome
Number of Sequences	128
Average Sequence Length	82 residues
Representative Sequence	IFDQRRFAIRPTPVVQQSADAGGLIDRQGCKSDKSVPRNANVRILVQSGAWSSVDIDEDGNADGQVKTADLTSNLATMPPWG
Number of Associated Samples	122
Number of Associated Scaffolds	128

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	0.00 %
% of genes near scaffold ends (potentially truncated)	98.44 %
% of genes from short scaffolds (< 2000 bps)	87.50 %
Associated GOLD sequencing projects	116
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.52

Most Common Taxonomy
Group	Bacteria (57.812 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil (8.594 % of family members)
Environment Ontology (ENVO)	Unclassified (25.000 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (42.969 % of family members)

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 5.45% β-sheet: 29.09% Coil/Unstructured: 65.45%
Feature Viewer

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Pfam ID	Name	% Frequency in 128 Family Scaffolds
PF03734	YkuD	10.16
PF02016	Peptidase_S66	3.12
PF07883	Cupin_2	2.34
PF03401	TctC	1.56
PF04392	ABC_sub_bind	1.56
PF00080	Sod_Cu	1.56
PF09084	NMT1	1.56
PF12848	ABC_tran_Xtn	1.56
PF00005	ABC_tran	1.56
PF07366	SnoaL	1.56
PF00106	adh_short	0.78
PF07729	FCD	0.78
PF13458	Peripla_BP_6	0.78
PF07681	DoxX	0.78
PF01402	RHH_1	0.78
PF07045	DUF1330	0.78
PF00211	Guanylate_cyc	0.78
PF04964	Flp_Fap	0.78
PF06776	IalB	0.78
PF13533	Biotin_lipoyl_2	0.78
PF00348	polyprenyl_synt	0.78
PF13649	Methyltransf_25	0.78
PF13539	Peptidase_M15_4	0.78
PF12710	HAD	0.78
PF09954	DUF2188	0.78

COG ID	Name	Functional Category	% Frequency in 128 Family Scaffolds
COG1376	Lipoprotein-anchoring transpeptidase ErfK/SrfK	Cell wall/membrane/envelope biogenesis [M]	10.16
COG3034	Murein L,D-transpeptidase YafK	Cell wall/membrane/envelope biogenesis [M]	10.16
COG1619	Muramoyltetrapeptide carboxypeptidase LdcA (peptidoglycan recycling)	Cell wall/membrane/envelope biogenesis [M]	3.12
COG0715	ABC-type nitrate/sulfonate/bicarbonate transport system, periplasmic component	Inorganic ion transport and metabolism [P]	1.56
COG2032	Cu/Zn superoxide dismutase	Inorganic ion transport and metabolism [P]	1.56
COG2984	ABC-type uncharacterized transport system, periplasmic component	General function prediction only [R]	1.56
COG3181	Tripartite-type tricarboxylate transporter, extracytoplasmic receptor component TctC	Energy production and conversion [C]	1.56
COG4521	ABC-type taurine transport system, periplasmic component	Inorganic ion transport and metabolism [P]	1.56
COG0142	Geranylgeranyl pyrophosphate synthase	Coenzyme transport and metabolism [H]	0.78
COG1802	DNA-binding transcriptional regulator, GntR family	Transcription [K]	0.78
COG2114	Adenylate cyclase, class 3	Signal transduction mechanisms [T]	0.78
COG2186	DNA-binding transcriptional regulator, FadR family	Transcription [K]	0.78
COG2259	Uncharacterized membrane protein YphA, DoxX/SURF4 family	Function unknown [S]	0.78
COG3847	Flp pilus assembly protein, pilin Flp	Extracellular structures [W]	0.78
COG4270	Uncharacterized membrane protein	Function unknown [S]	0.78
COG5342	Invasion protein IalB, involved in pathogenesis	General function prediction only [R]	0.78
COG5470	Uncharacterized conserved protein, DUF1330 family	Function unknown [S]	0.78

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	57.81 %
Unclassified	root	N/A	42.19 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	57.81 %
Unclassified	root	N/A	42.19 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	57.81 %
Unclassified	root	N/A	42.19 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	51.56 %
Unclassified	root	N/A	42.19 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.78 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	48.44 %
Unclassified	root	N/A	42.19 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.78 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	42.19 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	27.34 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.78 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	0.78 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	42.19 %
Xanthobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae	10.16 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	8.59 %
Hyphomicrobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae	2.34 %
Alphaproteobacteria bacterium PA3	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium PA3	0.78 %
Rhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae	0.78 %
Propionibacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales	0.78 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	42.19 %
Pseudolabrys	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys	10.16 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	4.69 %
Rhodoplanes	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes	2.34 %
Rhizobium/Agrobacterium group	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group	0.78 %
Nocardioidaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae	0.78 %
Alphaproteobacteria bacterium PA3	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium PA3	0.78 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	42.19 %
Pseudolabrys taiwanensis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → Pseudolabrys taiwanensis	9.38 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	4.69 %
unclassified Rhodoplanes	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes	2.34 %
unclassified Pseudolabrys	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → unclassified Pseudolabrys	0.78 %
Rhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group → Rhizobium	0.78 %
Nocardioides	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → Nocardioides	0.78 %
Alphaproteobacteria bacterium PA3	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium PA3	0.78 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	42.19 %
Pseudolabrys taiwanensis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → Pseudolabrys taiwanensis	9.38 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	4.69 %
Rhodoplanes sp. Z2-YC6860	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	2.34 %
Pseudolabrys sp. Root1462	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → unclassified Pseudolabrys → Pseudolabrys sp. Root1462	0.78 %
unclassified Nocardioides	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → Nocardioides → unclassified Nocardioides	0.78 %
Rhizobium etli	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group → Rhizobium → Rhizobium etli	0.78 %
Alphaproteobacteria bacterium PA3	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium PA3	0.78 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	42.19 %
Pseudolabrys taiwanensis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → Pseudolabrys taiwanensis	9.38 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	4.69 %
Rhodoplanes sp. Z2-YC6860	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	2.34 %
Rhizobium etli CNPAF512	strain	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group → Rhizobium → Rhizobium etli → Rhizobium etli CNPAF512	0.78 %
Nocardioides sp. TF02-7	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → Nocardioides → unclassified Nocardioides → Nocardioides sp. TF02-7	0.78 %
Pseudolabrys sp. Root1462	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → unclassified Pseudolabrys → Pseudolabrys sp. Root1462	0.78 %
Alphaproteobacteria bacterium PA3	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium PA3	0.78 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2140918013\|NODE_487622_length_1086_cov_6.358195	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1118	Open in IMG/M
3300000043\|ARcpr5yngRDRAFT_c025307	Not Available	508	Open in IMG/M
3300000317\|WSSedL2TaDRAFT_1043855	Not Available	504	Open in IMG/M
3300000733\|JGI12408J11912_1000954	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	3096	Open in IMG/M
3300000890\|JGI11643J12802_10052698	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1407	Open in IMG/M
3300000890\|JGI11643J12802_10271878	All Organisms → cellular organisms → Bacteria	2130	Open in IMG/M
3300001394\|JGI20191J14862_1023000	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1066	Open in IMG/M
3300001430\|JGI24032J14994_103562	Not Available	523	Open in IMG/M
3300001904\|JGI24736J21556_1031683	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → Pseudolabrys taiwanensis	816	Open in IMG/M
3300001991\|JGI24743J22301_10052699	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → Pseudolabrys taiwanensis	831	Open in IMG/M
3300003989\|Ga0055473_10297930	Not Available	533	Open in IMG/M
3300004024\|Ga0055436_10035675	All Organisms → cellular organisms → Bacteria → Proteobacteria	1294	Open in IMG/M
3300004070\|Ga0055488_10035974	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1014	Open in IMG/M
3300004114\|Ga0062593_100121179	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1906	Open in IMG/M
3300004479\|Ga0062595_100605136	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	855	Open in IMG/M
3300005293\|Ga0065715_10911981	Not Available	571	Open in IMG/M
3300005294\|Ga0065705_10239689	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1237	Open in IMG/M
3300005332\|Ga0066388_106321819	All Organisms → cellular organisms → Bacteria → Proteobacteria	598	Open in IMG/M
3300005334\|Ga0068869_100231326	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1469	Open in IMG/M
3300005337\|Ga0070682_100590093	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	876	Open in IMG/M
3300005340\|Ga0070689_102127895	Not Available	514	Open in IMG/M
3300005347\|Ga0070668_100474211	Not Available	1080	Open in IMG/M
3300005434\|Ga0070709_11504236	Not Available	547	Open in IMG/M
3300005439\|Ga0070711_100570882	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	940	Open in IMG/M
3300005440\|Ga0070705_101702464	Not Available	533	Open in IMG/M
3300005445\|Ga0070708_100690427	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	961	Open in IMG/M
3300005530\|Ga0070679_101985199	Not Available	531	Open in IMG/M
3300005549\|Ga0070704_100764504	Not Available	861	Open in IMG/M
3300005614\|Ga0068856_100002307	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	19650	Open in IMG/M
3300005614\|Ga0068856_101748238	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → Pseudolabrys taiwanensis	634	Open in IMG/M
3300005614\|Ga0068856_102120743	Not Available	572	Open in IMG/M
3300005719\|Ga0068861_102100204	Not Available	565	Open in IMG/M
3300005938\|Ga0066795_10004999	All Organisms → cellular organisms → Bacteria	3416	Open in IMG/M
3300006049\|Ga0075417_10257384	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	838	Open in IMG/M
3300006354\|Ga0075021_10214057	All Organisms → cellular organisms → Bacteria	1179	Open in IMG/M
3300006358\|Ga0068871_101025772	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → Pseudolabrys taiwanensis	769	Open in IMG/M
3300006854\|Ga0075425_100051816	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	4596	Open in IMG/M
3300006904\|Ga0075424_100256199	Not Available	1861	Open in IMG/M
3300006914\|Ga0075436_100494782	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	894	Open in IMG/M
3300006914\|Ga0075436_100523516	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	869	Open in IMG/M
3300007821\|Ga0104323_111915	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	1231	Open in IMG/M
3300009092\|Ga0105250_10495280	Not Available	554	Open in IMG/M
3300009094\|Ga0111539_11663437	Not Available	740	Open in IMG/M
3300009098\|Ga0105245_10027303	All Organisms → cellular organisms → Bacteria → Proteobacteria	5030	Open in IMG/M
3300009101\|Ga0105247_10344560	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1046	Open in IMG/M
3300009177\|Ga0105248_12500254	Not Available	588	Open in IMG/M
3300010046\|Ga0126384_10611103	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	956	Open in IMG/M
3300010359\|Ga0126376_11253530	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	759	Open in IMG/M
3300010362\|Ga0126377_12910097	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium PA3	552	Open in IMG/M
3300010371\|Ga0134125_10970647	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group → Rhizobium → Rhizobium etli → Rhizobium etli CNPAF512	932	Open in IMG/M
3300010371\|Ga0134125_11873211	Not Available	652	Open in IMG/M
3300010373\|Ga0134128_10010272	All Organisms → cellular organisms → Bacteria	11215	Open in IMG/M
3300010375\|Ga0105239_10188761	Not Available	2307	Open in IMG/M
3300010400\|Ga0134122_11499679	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	693	Open in IMG/M
3300010403\|Ga0134123_10279970	Not Available	1468	Open in IMG/M
3300011119\|Ga0105246_10441505	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1091	Open in IMG/M
3300012483\|Ga0157337_1044214	Not Available	501	Open in IMG/M
3300012496\|Ga0157353_1010571	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → Pseudolabrys taiwanensis	759	Open in IMG/M
3300012955\|Ga0164298_10273766	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1031	Open in IMG/M
3300012957\|Ga0164303_10588683	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	730	Open in IMG/M
3300012960\|Ga0164301_10635643	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	793	Open in IMG/M
3300012961\|Ga0164302_11010967	Not Available	649	Open in IMG/M
3300012985\|Ga0164308_10566188	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → Pseudolabrys taiwanensis	961	Open in IMG/M
3300012988\|Ga0164306_10601170	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	861	Open in IMG/M
3300013102\|Ga0157371_10793754	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → Pseudolabrys taiwanensis	713	Open in IMG/M
3300013104\|Ga0157370_11682013	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → Nocardioides → unclassified Nocardioides → Nocardioides sp. TF02-7	570	Open in IMG/M
3300013105\|Ga0157369_10571460	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1168	Open in IMG/M
3300013306\|Ga0163162_10112358	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2823	Open in IMG/M
3300015373\|Ga0132257_100198938	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2373	Open in IMG/M
3300015374\|Ga0132255_102201077	Not Available	841	Open in IMG/M
3300016445\|Ga0182038_11086230	Not Available	711	Open in IMG/M
3300017959\|Ga0187779_10002621	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	10981	Open in IMG/M
3300018083\|Ga0184628_10336197	Not Available	793	Open in IMG/M
3300021078\|Ga0210381_10055472	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → unclassified Pseudolabrys → Pseudolabrys sp. Root1462	1200	Open in IMG/M
3300021560\|Ga0126371_10633519	Not Available	1218	Open in IMG/M
3300022756\|Ga0222622_11055372	Not Available	597	Open in IMG/M
3300023067\|Ga0247743_1042468	Not Available	642	Open in IMG/M
3300025321\|Ga0207656_10625994	All Organisms → cellular organisms → Bacteria	550	Open in IMG/M
3300025457\|Ga0208850_1010530	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1767	Open in IMG/M
3300025911\|Ga0207654_10556170	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	815	Open in IMG/M
3300025922\|Ga0207646_11201689	Not Available	665	Open in IMG/M
3300025925\|Ga0207650_10837554	Not Available	780	Open in IMG/M
3300025936\|Ga0207670_11275901	Not Available	623	Open in IMG/M
3300025938\|Ga0207704_10078113	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2128	Open in IMG/M
3300025941\|Ga0207711_10429276	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1229	Open in IMG/M
3300025945\|Ga0207679_10360698	Not Available	1269	Open in IMG/M
3300025986\|Ga0207658_10299241	Not Available	1385	Open in IMG/M
3300026023\|Ga0207677_11329678	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → Pseudolabrys taiwanensis	661	Open in IMG/M
3300026078\|Ga0207702_11814435	Not Available	602	Open in IMG/M
3300026475\|Ga0257147_1059932	Not Available	574	Open in IMG/M
3300026835\|Ga0207782_114700	Not Available	613	Open in IMG/M
3300026836\|Ga0207612_1001234	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → Pseudolabrys taiwanensis	1045	Open in IMG/M
3300026839\|Ga0207764_120500	Not Available	590	Open in IMG/M
3300026873\|Ga0207620_1002403	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1271	Open in IMG/M
3300026921\|Ga0207860_1040662	Not Available	508	Open in IMG/M
3300026933\|Ga0207578_1011640	Not Available	644	Open in IMG/M
3300026960\|Ga0207582_1009407	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → Pseudolabrys taiwanensis	862	Open in IMG/M
3300027036\|Ga0207467_1000890	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1894	Open in IMG/M
3300027039\|Ga0207855_1045435	Not Available	593	Open in IMG/M
3300027330\|Ga0207777_1018439	All Organisms → cellular organisms → Bacteria	1366	Open in IMG/M
3300027330\|Ga0207777_1054560	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	706	Open in IMG/M
3300027378\|Ga0209981_1049794	Not Available	633	Open in IMG/M
3300027395\|Ga0209996_1016748	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → Pseudolabrys taiwanensis	1008	Open in IMG/M
3300027425\|Ga0207522_103549	Not Available	514	Open in IMG/M
3300027427\|Ga0207472_103186	Not Available	601	Open in IMG/M
3300027438\|Ga0207564_105754	Not Available	583	Open in IMG/M
3300027450\|Ga0207478_100580	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → Pseudolabrys taiwanensis	823	Open in IMG/M
3300027703\|Ga0207862_1185026	Not Available	620	Open in IMG/M
3300027907\|Ga0207428_10130597	All Organisms → cellular organisms → Bacteria	1922	Open in IMG/M
3300027910\|Ga0209583_10675463	Not Available	535	Open in IMG/M
3300028819\|Ga0307296_10572352	Not Available	618	Open in IMG/M
3300028889\|Ga0247827_10054178	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1849	Open in IMG/M
3300031099\|Ga0308181_1112024	Not Available	602	Open in IMG/M
3300031231\|Ga0170824_112437773	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	541	Open in IMG/M
3300031446\|Ga0170820_13593254	Not Available	584	Open in IMG/M
3300031474\|Ga0170818_100402290	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	514	Open in IMG/M
3300031740\|Ga0307468_100182887	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1394	Open in IMG/M
3300031908\|Ga0310900_10013411	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	4106	Open in IMG/M
3300031940\|Ga0310901_10590080	Not Available	507	Open in IMG/M
3300032174\|Ga0307470_10940094	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	682	Open in IMG/M
3300032180\|Ga0307471_103271337	Not Available	574	Open in IMG/M
3300032205\|Ga0307472_100671497	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	927	Open in IMG/M
3300032897\|Ga0335071_10447143	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1245	Open in IMG/M
3300033412\|Ga0310810_10149225	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2717	Open in IMG/M
3300034090\|Ga0326723_0083189	Not Available	1374	Open in IMG/M
3300034125\|Ga0370484_0069572	All Organisms → cellular organisms → Bacteria → Proteobacteria	893	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	67.19%
Host-Associated	Host-Associated	32.81%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	59.38%
Plants	Host-Associated → Plants	32.81%
Aquatic	Environmental → Aquatic	7.81%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	58.59%
Rhizosphere	Host-Associated → Plants → Rhizosphere	17.19%
Rhizoplane	Host-Associated → Plants → Rhizoplane	14.84%
Marine	Environmental → Aquatic → Marine	3.12%
Sediment	Environmental → Aquatic → Sediment	3.12%
Freshwater	Environmental → Aquatic → Freshwater	1.56%
Peat	Environmental → Terrestrial → Peat	0.78%
Roots	Host-Associated → Plants → Roots	0.78%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	39.84%
Loam	Environmental → Terrestrial → Soil → Loam	14.84%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	14.06%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	11.72%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	3.91%
Wetlands	Environmental → Aquatic → Marine → Wetlands	3.12%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	3.12%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	3.12%
Soil	Host-Associated → Plants → Rhizosphere → Soil	3.12%
Sediment	Environmental → Aquatic → Freshwater → Sediment	0.78%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	0.78%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	0.78%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	0.78%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	17.19%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	14.06%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	11.72%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	9.38%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	7.81%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	7.03%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	7.03%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	3.12%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	3.12%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	3.12%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	3.12%
Unclassified	Environmental → Aquatic → Marine → Wetlands → Unclassified	2.34%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	2.34%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	2.34%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	1.56%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	0.78%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	0.78%
Sediment	Environmental → Aquatic → Marine → Wetlands → Sediment	0.78%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	0.78%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	0.78%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	0.78%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	8.59%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	7.81%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	7.03%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	5.47%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	4.69%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	4.69%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	3.91%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	3.12%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	3.12%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	3.12%
Natural And Restored Wetlands	Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands	2.34%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	2.34%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	2.34%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	2.34%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	2.34%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	2.34%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	2.34%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	2.34%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	1.56%
Arctic Peat Soil	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil	1.56%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	1.56%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	1.56%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	1.56%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	1.56%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	1.56%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	1.56%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	0.78%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog	0.78%
Wetland	Environmental → Aquatic → Marine → Wetlands → Sediment → Wetland	0.78%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.78%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.78%
Unplanted Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Unplanted Soil	0.78%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Switchgrass Rhizosphere	0.78%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	0.78%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.78%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	0.78%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	0.78%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	0.78%
Untreated Peat Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Untreated Peat Soil	0.78%
Soil	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Soil	0.78%
Peat Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil	0.78%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Miscanthus Rhizosphere	0.78%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.78%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Rhizosphere	0.78%
Corn, Switchgrass And Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	0.78%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.78%
Miscanthus Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere	0.78%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	0.78%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2140918013	Soil microbial communities from Great Prairies - Iowa soil (MSU Assemblies)	Environmental	Open in IMG/M
3300000043	Arabidopsis rhizosphere microbial communities from the University of North Carolina - sample from Arabidopsis cpr5 young rhizosphere	Host-Associated	Open in IMG/M
3300000317	Wetland microbial communities from Twitchell Island in the Sacramento Delta, sample from surface sediment Feb2011 Site L2 Tule	Environmental	Open in IMG/M
3300000733	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 80	Environmental	Open in IMG/M
3300000890	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300001394	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 210 deep-092012	Environmental	Open in IMG/M
3300001430	Switchgrass rhizosphere bulk soil microbial communities from Kellogg Biological Station, Michigan, USA, with spike-in - S5	Environmental	Open in IMG/M
3300001904	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2	Host-Associated	Open in IMG/M
3300001991	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2	Host-Associated	Open in IMG/M
3300003989	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Muzzi_CordA_D2	Environmental	Open in IMG/M
3300004024	Wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Browns_ThreeSqB_D2	Environmental	Open in IMG/M
3300004070	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - RushOxbow_ThreeSqA_D2	Environmental	Open in IMG/M
3300004114	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5	Environmental	Open in IMG/M
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental	Open in IMG/M
3300005293	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Bulk Soil Replicate 1 : eDNA_1	Host-Associated	Open in IMG/M
3300005294	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 Bulk Soil	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005334	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2	Host-Associated	Open in IMG/M
3300005337	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG	Environmental	Open in IMG/M
3300005340	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG	Environmental	Open in IMG/M
3300005347	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG	Host-Associated	Open in IMG/M
3300005434	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG	Environmental	Open in IMG/M
3300005439	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG	Environmental	Open in IMG/M
3300005440	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaG	Environmental	Open in IMG/M
3300005445	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG	Environmental	Open in IMG/M
3300005530	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG	Environmental	Open in IMG/M
3300005549	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG	Environmental	Open in IMG/M
3300005614	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2	Host-Associated	Open in IMG/M
3300005719	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2	Host-Associated	Open in IMG/M
3300005938	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Permafrost soil replicate 2 DNA2013-191	Environmental	Open in IMG/M
3300006049	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1	Host-Associated	Open in IMG/M
3300006354	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2012	Environmental	Open in IMG/M
3300006358	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2	Host-Associated	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300006904	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD3	Host-Associated	Open in IMG/M
3300006914	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5	Host-Associated	Open in IMG/M
3300007821	Permafrost core soil microbial communities from Svalbard, Norway - sample 2-10-2 Soapdenovo	Environmental	Open in IMG/M
3300009092	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-4 metaG	Host-Associated	Open in IMG/M
3300009094	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2)	Host-Associated	Open in IMG/M
3300009098	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG	Host-Associated	Open in IMG/M
3300009101	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG	Host-Associated	Open in IMG/M
3300009177	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG	Host-Associated	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010371	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-1	Environmental	Open in IMG/M
3300010373	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-4	Environmental	Open in IMG/M
3300010375	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG	Host-Associated	Open in IMG/M
3300010400	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-2	Environmental	Open in IMG/M
3300010403	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-3	Environmental	Open in IMG/M
3300011119	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG	Host-Associated	Open in IMG/M
3300012483	Arabidopsis rhizosphere microbial communities from North Carolina - M.Col.4.yng.040610	Host-Associated	Open in IMG/M
3300012496	Unplanted soil (control) microbial communities from North Carolina - M.Soil.4.yng.090610	Environmental	Open in IMG/M
3300012955	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_216_MG	Environmental	Open in IMG/M
3300012957	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_207_MG	Environmental	Open in IMG/M
3300012960	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_231_MG	Environmental	Open in IMG/M
3300012961	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_202_MG	Environmental	Open in IMG/M
3300012985	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_246_MG	Environmental	Open in IMG/M
3300012988	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_242_MG	Environmental	Open in IMG/M
3300013102	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG	Host-Associated	Open in IMG/M
3300013104	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG	Host-Associated	Open in IMG/M
3300013105	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG	Host-Associated	Open in IMG/M
3300013306	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG	Host-Associated	Open in IMG/M
3300014200	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin06_30_metaG	Environmental	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300016445	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108	Environmental	Open in IMG/M
3300017944	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0815_BV2_10_20_MG	Environmental	Open in IMG/M
3300017959	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP10_10_MG	Environmental	Open in IMG/M
3300018083	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_5_b1	Environmental	Open in IMG/M
3300021078	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_5_coex redo	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300022756	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_5_b1	Environmental	Open in IMG/M
3300023067	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S221-509R-5	Environmental	Open in IMG/M
3300025321	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025457	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 210-2 shallow-092012 (SPAdes)	Environmental	Open in IMG/M
3300025911	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025922	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025925	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025936	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes)	Environmental	Open in IMG/M
3300025938	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025941	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025945	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025986	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026023	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026078	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026475	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - CO-12-A	Environmental	Open in IMG/M
3300026835	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 60 (SPAdes)	Environmental	Open in IMG/M
3300026836	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G08A2-10 (SPAdes)	Environmental	Open in IMG/M
3300026839	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 52 (SPAdes)	Environmental	Open in IMG/M
3300026873	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G05A5-12 (SPAdes)	Environmental	Open in IMG/M
3300026921	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 28 (SPAdes)	Environmental	Open in IMG/M
3300026933	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G10K4-12 (SPAdes)	Environmental	Open in IMG/M
3300026960	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G01A5-10 (SPAdes)	Environmental	Open in IMG/M
3300027036	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G07A5-10 (SPAdes)	Environmental	Open in IMG/M
3300027039	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 14 (SPAdes)	Environmental	Open in IMG/M
3300027330	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 35 (SPAdes)	Environmental	Open in IMG/M
3300027378	Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M1 PM (SPAdes)	Host-Associated	Open in IMG/M
3300027395	Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M2 PM (SPAdes)	Host-Associated	Open in IMG/M
3300027425	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G05A2-10 (SPAdes)	Environmental	Open in IMG/M
3300027427	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G08A2-11 (SPAdes)	Environmental	Open in IMG/M
3300027438	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G08A3a-11 (SPAdes)	Environmental	Open in IMG/M
3300027450	Soil microbial communities from Kellog Biological Station, Michigan, USA - Nitrogen cycling UWRJ-G07K3-12 (SPAdes)	Environmental	Open in IMG/M
3300027703	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 81 (SPAdes)	Environmental	Open in IMG/M
3300027907	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes)	Host-Associated	Open in IMG/M
3300027910	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2014 (SPAdes)	Environmental	Open in IMG/M
3300028819	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_153	Environmental	Open in IMG/M
3300028889	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day2	Environmental	Open in IMG/M
3300031099	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_152 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031231	Coassembly Site 11 (all samples) - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031446	Fir Summer Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031474	Fir Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031740	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05	Environmental	Open in IMG/M
3300031908	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C24D1	Environmental	Open in IMG/M
3300031940	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C24D2	Environmental	Open in IMG/M
3300032174	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_05	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300032205	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05	Environmental	Open in IMG/M
3300032897	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.5	Environmental	Open in IMG/M
3300033412	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - NC	Environmental	Open in IMG/M
3300034090	Peat soil microbial communities from Michigan Hollow, Ithaca, NY, United States - MHF00N	Environmental	Open in IMG/M
3300034125	Peat soil microbial communities from wetlands in Alaska, United States - Sheep_creek_tus_01_15	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
Iowa-Corn-GraphCirc_01274010	2140918013	Soil	IFDQRRFAIRPTPVVQQSADGGGSIGRQNCKPENRIPRNANVRILMQSGAWSGVDIDEDGNVDGQVRTSDLTSDLATMPPWG
ARcpr5yngRDRAFT_0253071	3300000043	Arabidopsis Rhizosphere	VQQSADGGGVGSIDRQNCKSDNRVPRNANVRILVQSGAWSSVDIDEDGNADGQVKTSDLTSSLATMPPWDPSL*
WSSedL2TaDRAFT_10438551	3300000317	Wetland	TPVVQESSGRGGGHQGCNSDIHVPRNANVRILAQSGVWSDVDIDEDGNADGQVRTSDLTSNLATMPPWGPSS*
JGI12408J11912_10009541	3300000733	Tropical Forest Soil	FQESGGGGGLIDRRNCRSDNRVPRNANVRILVQSGAWSSVDLDEDGNPDGYVRTSDLTSNFATMPPWEPS*
JGI11643J12802_100526981	3300000890	Soil	SRNQKIFDQRRFALRATPVVQDTAEAGGFTDRQNCKSGNSVPRNSNVRILGQSSGWCSVDIDEDGNVDGRIKTSDLTPSLATMPPWA*
JGI11643J12802_102718781	3300000890	Soil	TPVVQQSADAGGGGSDRQNCKSDSRVPKNANVRILVQSGAWSGVDVDEDGNADGQVKTADLTSDLATMPPWG*
JGI20191J14862_10230001	3300001394	Arctic Peat Soil	RNQKIFDQRRFAIRTTPVVQESGGGGGDRQGCKSDIRVPRNANVRILVQSGAWSGVDIDEDGYADGQVRTSDLTSNLATMPPWGPSL*
JGI24032J14994_1035621	3300001430	Corn, Switchgrass And Miscanthus Rhizosphere	ERXFAIRPTPVVQQSADAGGLIDRQGCKSDKSVPRNANVRILVQSGAWSSVDIDEDGNADGQVKTADLTSNLATMPPWG*
JGI24736J21556_10316832	3300001904	Corn Rhizosphere	DRSRNQKIFDERRFAIRPTPVVQQSADAGGLIDRQGCKSDKSVPRNANVRILVQSGAWSSVDIDEDGNADGQVKTADLTSNLATMPPWG*
JGI24743J22301_100526991	3300001991	Corn, Switchgrass And Miscanthus Rhizosphere	VQQSADAAGGGGDRLGCKADNRVPKNANVRILAQSGAWSGVDVDEDGYADGQVRTADLTSDLATMPPWGSS*
Ga0055473_102979301	3300003989	Natural And Restored Wetlands	RRFALRETPVFQESGGRRGLIGRQKCRRSNRVPKNANVRVLAQSGDWCSVDIDEDGKADGYIRTSDLTSDLATMPPWRPS*
Ga0055436_100356754	3300004024	Natural And Restored Wetlands	KSRNQKIFDQRRFAIRATPVVQDGGKDRQGCKPDKSVPRNASVRILAQSGAWCSVDVDEDGNADGQVKTADLTSNLATMPPWGSPS*
Ga0055488_100359743	3300004070	Natural And Restored Wetlands	IRATPVVQDGGKDRQGCKPDKSVPRNASVRILAQSGAWCSVDVDEDGNADGQVKTADLTSNLATMPPWGSPS*
Ga0062593_1001211794	3300004114	Soil	IRPTPVVQQSADAGGSIGRQGCKPDKSVPRNANVRILVQSGAWCGVDVDEDGNADGQVKTADLTSNLATMPPWGSPS*
Ga0062595_1006051361	3300004479	Soil	DQRRFAIRPTPVVQQSADGGGGGSIDRQNCKSDNRVPRNANVRILAQSGAWSSVDIDEDGNADGQVKTSDLTSSLVTMPPWDPSL*
Ga0065715_109119811	3300005293	Miscanthus Rhizosphere	RRFAIRPTPVVQQSADAGGSIGRQGCKPDKSVPRNANVRILVQSGAWCGVDVDEDGNADGQVKTADLTSNLATMPPWGSPS*
Ga0065705_102396893	3300005294	Switchgrass Rhizosphere	RSRNQKIFDERRFAIRPTPVVQQSADAGGLIDRQGCKSDKSVPRNANVRILVQSGAWSSVDIDEDGNADGQVKTADLTSNLATMPPWG*
Ga0066388_1063218192	3300005332	Tropical Forest Soil	PTPVVQQSADAAGGGGDRLGCKPDSRVARNTNVRILAQSGAWSSVDVDEDGIADGQVKTADLTSDLATMPPWG*
Ga0068869_1002313261	3300005334	Miscanthus Rhizosphere	RRFAIRPTPVVQQSADAGGLIDRQGCKSDKSVPRNANVRILVQSGAWSSVDIDEDGNADGQVKTADLTSNLATMPPWG*
Ga0070682_1005900931	3300005337	Corn Rhizosphere	RRFAIRPTPVVQQSADGGSGGSIDRQNCKSDNRVPRNANVRILAQSGAWSSVDIDEDGNADGQVKTSDLTSSLVTMPPWDPSL*
Ga0070689_1021278951	3300005340	Switchgrass Rhizosphere	VDRSRNQKIFDQRRFAIRPTPVVQQSADGGGGGSIDRQNCKSDNRVPRNANVRILAQSGAWSSVDIDEDGNADGQVKTSDLTSSLVTMPPWDPSL*
Ga0070668_1004742112	3300005347	Switchgrass Rhizosphere	GAWGAGEVDKDRNQKIFDQRRFAIRATAVVLEGGAGGCKADSRVPKNANVRVLAQSGEWSSVDVDEDGNPDGRIKLADLTTSLATMPPWA*
Ga0070709_115042361	3300005434	Corn, Switchgrass And Miscanthus Rhizosphere	KIFDQRRFAIRPTPVVQQSADGGGGGSIDRQNCKSDNRVPRNANVRILVQSGAWSSVDIDEDGNADGQVKTADLTSRLATMPPWDPSL*
Ga0070711_1005708822	3300005439	Corn, Switchgrass And Miscanthus Rhizosphere	SRNQKIFDQRRFAIRPTPVVQQSADGGGVGSIDRQNCKSDNRVPRNANVRILVQSGAWSSVDIDEDGNADGQVKTSDLTSSLATMPPWDPSL*
Ga0070705_1017024642	3300005440	Corn, Switchgrass And Miscanthus Rhizosphere	IRPTPVVQQSADAGGGGSDRQNCKSDSRVPKNANVRILVQSGAWSGVDVDEDGSADGQVKTADLTSDLATMPPWGS*
Ga0070708_1006904272	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	RNQKIFDQRRFAIRPTPVVQQSADGGGGGSIDRQNCKSDNRVPRNANVRILAQSGAWSSVDIDEDGNADGQVKTSDLTSSLVTMPPWDPSL*
Ga0070679_1019851991	3300005530	Corn Rhizosphere	RRFAIRATPVVQQSADAGGDGSIARQNCKSEHRVPRNANVRVLVQSGVWSGVDIDEDGNADGQVRTADLTSDLATMPAWG*
Ga0070704_1007645042	3300005549	Corn, Switchgrass And Miscanthus Rhizosphere	QQSADAGGSIGRQGCKPDKSVPRNANVRILVQSGAWCGVDVDEDGNADGQVKTADLTSNLATMPPWGSPS*
Ga0068856_10000230720	3300005614	Corn Rhizosphere	TPVVQQSADAAGGGGDRLGCKADNRVPKNANVRILAQSGAWSGVDVDEDGYADGQVRTADLTSDLATMPPWGSS*
Ga0068856_1017482381	3300005614	Corn Rhizosphere	TPVVQQSADAGGLIDRQGCKSDKSVPRNANVRILVQSGAWSSVDIDEDGNADGQVKTADLTSNLATMPPWG*
Ga0068856_1021207432	3300005614	Corn Rhizosphere	GAWGAGEVDKDRNQKIFDQRRFAIRATAVVEEGGAGGCKSDSRVPKNANVRVLAQSGEWSSVDVDEDGNPDGRIKLADLTTSLATMPPWA*
Ga0068861_1021002042	3300005719	Switchgrass Rhizosphere	QKIFDQRRFAIRATAVVLEGGAGGCKADSRVPKNANVRVLAQSGEWSSVDVDEDGNPDGRIKLADLTTSLATMPPWA*
Ga0066795_100049991	3300005938	Soil	TTPVVQESGGGGGDRQGCKSDMRVPRNANVRILVQSGAWSGVDIDEDGNADGQVRTSDLTSNLATMPPWGPSS*
Ga0075417_102573842	3300006049	Populus Rhizosphere	DTSRNQKIFDQRRFALRATPVVQDTAEAGGFADRQNCKSGNSVPRNSNVRILGQSSAWCSVDIDEDGNVDGRIKTSDLTASLATMPPWA*
Ga0075021_102140571	3300006354	Watersheds	AGDVDRSRNQKIFDQRRFAIRETPVESGRGGGCKSDNRVPRNANVRILVQSGAWSGVDIDEDGNVDGQVRTSDLTSNLATMPAWGQSS*
Ga0068871_1010257722	3300006358	Miscanthus Rhizosphere	EVDRSRNQKIFDGRRFAIRPTPVVQQSADAGGLIDRQGCKSDKSVPRNANVRILVQSGAWSSVDIDEDGNADGQVKTADLTSNLATMPPWG*
Ga0075425_1000518161	3300006854	Populus Rhizosphere	FALRATPVVQDTAEAGGFADRQNCKSGNSVPRNSNVRILGQSSAWCSVDIDEDGNVDGRIKTSDLTASLATMPPWA*
Ga0075424_1002561992	3300006904	Populus Rhizosphere	PVVQQSADAAGGGGDRLGCKPDNRLARNTNVRILVQSGAWSGVDVDEDGIADGQVKTADLTPDLATMPPWGPS*
Ga0075436_1004947821	3300006914	Populus Rhizosphere	EEVDTSRNQKIFDQRRFALRATPVVQDTAEAGGFTDRQNCKSGNSVPRNSNVRILGQSSGWCSVDIDEDGNVDGRIKTSDLTPSLATMPPWA*
Ga0075436_1005235162	3300006914	Populus Rhizosphere	GEIDKSRNQKIFDQRRFAIRLTPVVQQSADAAGGGGERQSCKPDSRVARNANVRILVQSGAWSGVDVDEDGIADGQVKTADLTSDLATMPPWGSSG*
Ga0104323_1119151	3300007821	Soil	PVVQESSGGGGDRQGCKSDIRVPRNANVRILVQSGAWSGVDIDEDGNADGQVRTSDLTSNLATMPPWGPSS*
Ga0105250_104952802	3300009092	Switchgrass Rhizosphere	IFDERRFAIRATAVVQEGGTGGCKSDSRVPKNANVRVLAQSGGWSSVDVDEDGNPDGRIKLADLTTSLATMPPWA*
Ga0111539_116634372	3300009094	Populus Rhizosphere	DRNQKIFDQRRFAIRATAVVEEGGAGGCKSDSRVPKNANVRVLAQSGEWSSVDVDEDGNPDGRIKLADLTTSLATMPPWA*
Ga0105245_100273037	3300009098	Miscanthus Rhizosphere	FDQRRFAIRPTPVVQQSADGGGSIDRQNCKSDNRVPKNANVRILVQSGAWSSVDIDEDGNPDGHVKTAALTSNLAMMPPWGPSL*
Ga0105247_103445602	3300009101	Switchgrass Rhizosphere	VVQQSADGGGGGSIDRQNCKSDNRVPRNANVRILAQSGAWSSVDIDEDGNADGQVKTSDLTSSLVTMPPWDPSL*
Ga0105248_125002542	3300009177	Switchgrass Rhizosphere	RRFAIRPTPVVQQSADAGGLIDRQGCKSDKSVPRNANVRILVQSGAWSSVDIDEDGNADGQVKIADLTSNLATMPPWG*
Ga0126384_106111031	3300010046	Tropical Forest Soil	IRVTPVFQESGGGGGLIDRQNCKSDNRVPRNANVRILAQSGAWSSVDIDEDGNPDGHVRTSDLTSNLATMPPWEPSS*
Ga0126376_112535301	3300010359	Tropical Forest Soil	AIRPTPVVQLSADGEGGALIGRQSCKSDNRVPRNANVRILTQSGAWCGVDIDEDGNPDGQIKTADLTSNLATMPPWGPS*
Ga0126377_129100971	3300010362	Tropical Forest Soil	IFDQRRFALRATPVVQDTAEAGGFTDRQNCKSGNSVPRNSNVRILGQSSAWCSVDIDEDGSVDGRIKTSDLTPSLVTMPPWA*
Ga0134125_109706471	3300010371	Terrestrial Soil	RNQKIFEQRRFAIRTTPVESAGGGDRQGCKSDNRVPRNANVRVLVQSGAWSGVDIDEDGNVDGRVRTSDLTSNLATMPAWGQS*
Ga0134125_118732111	3300010371	Terrestrial Soil	RIFDQRRFAIKATPVVQESSAGGCKSDSRVAKNANVRVLAQSGEWSSVDVDEDGNPDGRIKLSDLTASLATMPPWGPSA*
Ga0134128_100102721	3300010373	Terrestrial Soil	KIFDQRRFAIRPTPVVQQSADGGSGGSIDRQNCKSDNRVPRNANVRILAQSGAWSSVDIDEDGNADGQVKTSDLTSSLVTMPPWDPSL*
Ga0105239_101887614	3300010375	Corn Rhizosphere	GEGDKNRNQKIFDQRRFAIRATAVVLEGGAGGCKADSRVPKNANVRVLAQSGEWSSVDVDEDGNPDGRIKLADLTTSLATMPPWA*
Ga0134122_114996791	3300010400	Terrestrial Soil	QRRFAIRPTPVVQQSADGGGSIDRQNCKSDNRVPKNANVRILVQSGAWSSVDIDEDGNPDGHVKTADLTSNLAMMPPWGPSL*
Ga0134123_102799703	3300010403	Terrestrial Soil	WGAGEVDKERNQKIFDQRRFAIRATAVVQEGGAGGCKSDSRVPKNANVRVLAQSGEWSSVDVDEDGNPDGRIKLADLTTSLATMPPWA*
Ga0105246_104415051	3300011119	Miscanthus Rhizosphere	RPTPVVQQSADGGSGGSIDRQNCKSDNRVPKNANVRILVQSGAWSSVDIDEDGNPDGHVKTADLTSNLAMMPPWGPSL*
Ga0157337_10442142	3300012483	Arabidopsis Rhizosphere	AIRPTPVVQQSADAGGLIDRQGCKSDKSVPRNANVRILVQSGAWSSVDIDEDGNADGQVKTADLTSNLATMPPWG*
Ga0157353_10105712	3300012496	Unplanted Soil	QKIFDERRFAIRPTPVVQQSADAGGLIDRQGCKSDKSVPRNANVRILVQSGAWSSVDIDEDGNADGQVKTADLTSNLATMPPWG*
Ga0164298_102737662	3300012955	Soil	AIRPTPAVQQSADGGGGASIDRQNCKSDNRVPRNANVRILAQSGAWSSVDIDEDGNADGQVKTSDLTSSLVTMPPWDPSL*
Ga0164303_105886831	3300012957	Soil	KIFDQRRFAIRPTPVVQQSADGGGGGSIDRQNCKSDNRVPRNANVRILAQSGAWSSVDIDEDGNADGQVKTSDLTSSLVTMPPWDPSL*
Ga0164301_106356431	3300012960	Soil	ATPVVQQSADAGGAGSIDRQNCKPNSHVPRNANVRILQQSGGWCSVDIDEDGNADGQIKTTDLTSDLATMPPWAPS*
Ga0164302_110109671	3300012961	Soil	KDRNQRIFDQRRFAIRATPVVQESSGGGCKSDSRVPKNANVRVLAQSGEWSSVDVDEDGNPDGRIKLSDLTASLTTMPPWA*
Ga0164308_105661881	3300012985	Soil	IFDQRRFAIRPTPVVQQSADAGGLIDRQGCKSDKSVPRNANVRILVQSGAWSSVDIDEDGNADGQVKTADLTSNLATMPPWG*
Ga0164306_106011702	3300012988	Soil	AIRPTPVVQQSADGGGSIDRQNCKSDNRVPKNANVRILVQSGAWSSVDIDEDGNPDGHVKTADLTSNLAMMPPWGPSL*
Ga0157371_107937542	3300013102	Corn Rhizosphere	DERRFAIRPTPVVQQSADAGGLIDRQGCKSDKSVPRNANVRILVQSGAWSSVDIDEDGNADGQVKIADLTSNLATMPPWG*
Ga0157370_116820131	3300013104	Corn Rhizosphere	IRTTLVESGAGGGDRQGCKSDNRVPRNANVRVLAQSGAWSGVDIDEDGNVDGRVRTSDLTSNLATMPAWG*
Ga0157369_105714601	3300013105	Corn Rhizosphere	DKSRNQKIFDQRRFAIRLTPVVQQSADAAGGGGDRLGCKADNRVPKNANVRILAQSGAWSGVDVDEDGYADGQVRTADLTSDLATMPPWGSS*
Ga0163162_101123581	3300013306	Switchgrass Rhizosphere	TPVVQQSADAGGLIDRQGCKSDKSVPRNANVRILVQSGAWSSVDIDEDGNADGQVKTADLTSNLATMPPRG*
Ga0181526_109821671	3300014200	Bog	VQESGGGGSDRQGCKSDMRVPRNANVRILVQSGAWSGVDIDEDGKVDGQVRTSDLTSNLATMPPWGPS*
Ga0132257_1001989381	3300015373	Arabidopsis Rhizosphere	AIRQTPVVQQSADAAGGGGDRLGCKPDSHVARNTNVRILAQSGAWSGVDVDEDGIVDGQVKTADLTSDLATMPPWGPAA*
Ga0132255_1022010772	3300015374	Arabidopsis Rhizosphere	NQKIFDQRRFAIRPTPVVQQSADAAGGGGDRLGCKPDNRLARNTNVRILVQSGAWSGVDVDEDGIADGQVKTADLTSDLATMPPWGPS*
Ga0182038_110862302	3300016445	Soil	RTTPVVQGNNGNPLGCKSDTRVPRNANIRILVQSDVWSDVDIDEDGNADGRVRTADLTSNLATMPPWKP
Ga0187786_100520631	3300017944	Tropical Peatland	PVVQESGGGGGCKVDNRVPRNANVRILVQSDVWSGVDIDEDGNVDGQIRTSDLTSNLATMPPWGSSS
Ga0187779_100026211	3300017959	Tropical Peatland	PVVQQSADAGGGGPVDRQNCKPDSRVPRNANVRILQQSGAWCSVDVDEDGNADGQIKTSDLTFDLATMPPWAS
Ga0184628_103361971	3300018083	Groundwater Sediment	RNQKIFDQRRFAIRTTPVESSGGGGCKPDSRVPRNANVRILAQSGAWSGVDIDEDGNADGQVRTSDLTSNLATMPPWGPSS
Ga0210381_100554721	3300021078	Groundwater Sediment	AWGAGKVDGSRNQKIFDQRRFAIRTTSVVQESGGGSGQSCKSDNRVPRNANVRILDQAGGWSSVDVDEDGNADGRIKASDLTPSLATMPAWNPTS
Ga0126371_106335191	3300021560	Tropical Forest Soil	RRFAVRATPVVQESGGSGGLIDHQNCKSDNRVPRNANVRILDQSGAWSSVDIDEDGNPDGNVRTSDLTSSLAKMPPWAPTS
Ga0222622_110553722	3300022756	Groundwater Sediment	QRRFAIRTTSVVQESGGGSGQSCKSDNRVPRNANVRILDQAGGWSSVDVDEDGNADGRIKASDLTPSLATMPAWNPTS
Ga0247743_10424681	3300023067	Soil	KIFDERCFAIRPTPVVQQSADAGGLIDRQGCKSDKSVPRNANVRILVQSGAWSSVDIDEDGNADGQVKTADLTSNLATMPPWG
Ga0207656_106259942	3300025321	Corn Rhizosphere	KIFDQRRFAIRTTPVVQQSADAGGGGSIDRQGCKPDSRVTRNNNVRVLAQSGAWCGVDVDEDGSVDGQIRTADLTPDLATMPPWGSPA
Ga0208850_10105303	3300025457	Arctic Peat Soil	KIFDQRRFAIRTTPVESGGGGGDRQGCKSDIRVPRNANVRILVQSGAWSGVDIDEDGNADGQVRTSDLTSNLATMPPWGQSS
Ga0207654_105561701	3300025911	Corn Rhizosphere	EVDRSRNQKIFDQRRFAIRPTPVVQQSADGGGGGSIDRQNCKSDNRVPRNANVRILAQSGAWSSVDIDEDGNADGQVKTSDLTSSLVTMPPWDPSL
Ga0207646_112016891	3300025922	Corn, Switchgrass And Miscanthus Rhizosphere	KSRNQKIFDQRRFAIRLTPVVQQSADAAGGGGDRLGCKADNRVPKNANVRILAQSGAWSGVDVDEDGYADGQVRTADLTSDLATMPPWGSS
Ga0207650_108375541	3300025925	Switchgrass Rhizosphere	IFDQRRFAIRPTPVVQQSADAAGGGGDRLGCKPDNRLARNTNVRILVQSGAWSGVDVDEDGIADGQVKTADLTPDLATMPPWGPS
Ga0207670_112759011	3300025936	Switchgrass Rhizosphere	GAGEVDKDRDQRIFDQRRFAIRATAVVQEGGAGGCKSDSRVPKNANVRVFAQSGEWSSVDVDEDGNPDGRIKLADLTTSLATMPPWA
Ga0207704_100781131	3300025938	Miscanthus Rhizosphere	PVVQQSADGGGGGSIDRQNCKSDNRVPRNANVRILAQSGAWSSVDIDEDGNADGQVKTSDLTSSLVTMPPWDPSL
Ga0207711_104292761	3300025941	Switchgrass Rhizosphere	VDTSRNQKIFDQRRFAIRPTPVVQQSADGGGSIDRQNCKSDNRVPKNANVRILVQSGAWSSVDIDEDGNPDGHVKTADLTSNLAMMPPWGPSL
Ga0207679_103606981	3300025945	Corn Rhizosphere	EDLRQRRFAIRATAVVLEGGAGGCKADSRVPKNANVRVLAQSGEWSSVDVDEDGNPDGRIKLADLTTSLATMPPWA
Ga0207658_102992413	3300025986	Switchgrass Rhizosphere	GEVDKDRNQKIFDQRRFAIRATAVVLEGGAGGCKADSRVPKNANVRVLAQSGEWSSVDVDEDGNPDGRIKLADLTTSLATMPPWA
Ga0207677_113296782	3300026023	Miscanthus Rhizosphere	DERRFAIRPTPVVQQSADAGGLTDRQGCKSDKSVPRNANVRILVQSGAWSSVYIDEDGNADGQVKTADLTSNLATMPPWG
Ga0207702_118144352	3300026078	Corn Rhizosphere	GAWGAGEVDKDRNQKIFDERRFAIRATAVVQEGGTGGCKSDSRVPKNANVRVLAQSGGWSSVDVDEDGNPDGRIKLADLTTSLATMPPWA
Ga0257147_10599322	3300026475	Soil	RSRNQKIFDQRRFAIRPTPVVQQSADGGGGGPIDRQNCKSDNRVPRNANVRILVQSGAWSSVDIDEDGNADGQVKTSDLTSSLATMPPWDPSL
Ga0207782_1147001	3300026835	Tropical Forest Soil	RFAFHTTPVFQESGRGGGLIDRRNCRSDNRVPRNANVRILVQSGAWSSVDLDEDGNPDGYVRTSDLTSNFATMPPWEPS
Ga0207612_10012342	3300026836	Soil	VDRSRNQKIFDERCFAIRPTPVVQQSADAAGDRLGCKADNRVPKNANVRILAQSGAWSGVDVDEDGYADGQVRTADLTSDLATMPPWGSS
Ga0207764_1205001	3300026839	Tropical Forest Soil	GAGEVDRSRNQKIFEQRRFAIRTTPVESGGGGGDRQSCKSDNRVPRNANVRILVQSGAWSDVDIDEDGNVDGQVRTSDLTSNLATMPPWGPSS
Ga0207620_10024033	3300026873	Soil	IDKSRNQKIFDQRRFAIRLTPVVQQSADAAGGGGDRLGCKADNRVPKNANVRILAQSGAWSGVDVDEDGYADGQVRTADLTSDLATMPPWGSS
Ga0207860_10406621	3300026921	Tropical Forest Soil	QKIFEQRRFAIRTTPVESGGGGGDRQSCKSDNRVPRNANVRILVQSGAWSDVDIDEDGNVDGQVRTSDLTSNLATMPPWGPSS
Ga0207578_10116401	3300026933	Soil	IRLTPVVQQSADAAGGGGDRLGCKADNRVPKNANVRILAQSGAWSGVDVDEDGYADGQVRTADLTSDLATMPPWGSS
Ga0207582_10094072	3300026960	Soil	QSRNQKIFDQRRFAIRATPVVQQSADAGGDGSIARQNCKSEHRVPRNANVRVLVQSGVWSGVDIDEDGNADGQVRTADLTSDLATMPPWGSS
Ga0207467_10008901	3300027036	Soil	VVQQSADAAGGGGDRLGCKADNRVPKNANVRILAQSGAWSGVDVDEDGYADGQVRTADLTSDLATMPPWGSS
Ga0207855_10454352	3300027039	Tropical Forest Soil	RRFAIRTTPVESGGGGGDRQSCKSDNRVPRNANVRILVQSGAWSDVDIDEDGNVDGQVRTSDLTSNLATMPPWGPSS
Ga0207777_10184391	3300027330	Tropical Forest Soil	KIFDQRRFAVRATPVFQTSGGGGRLIDRQNCRSDNRVPRNANVRILVQSDAWSSVDIDEDGNPDGYVRTSDLTSNLAKMPPWQPS
Ga0207777_10545602	3300027330	Tropical Forest Soil	RSRNQKIFDQRRFAVRTTPVFQESGGGGGLIDRRNCRSDNRVPRNANVRILVQSDAWSSVDIDEDGNPDGYVRTSDLTSNLATMPRWEPL
Ga0209981_10497941	3300027378	Arabidopsis Thaliana Rhizosphere	RNQKIFDQRRFAIRLTPVVQQSADAAGGGGDRLGCKADNRVPKNANVRILAQSGAWSGVDVDEDGNADGQVKTADLTSDLATMPPWGSS
Ga0209996_10167481	3300027395	Arabidopsis Thaliana Rhizosphere	WGGGEVDQSRNRTIFEQRRFVIRPTPVVQQSADAGGGGSDRQNCKSDSRVPKNANVRILVQSGAWSGVDVDEDGNADGQVKTADLTSDLATMPPWG
Ga0207522_1035492	3300027425	Soil	QKIFDQRRFAIRLTPVVQQSADAAGGGGDRLGCKADNRVPKNANVRILAQSGAWSGVDVDEDGYADGQVRTADLTSDLATMPPWGSS
Ga0207472_1031862	3300027427	Soil	VQQSADAAGGGGDRLGCKADNRVPKNANVRILAQSGAWSGVDVDEDGYADGQVRTADLTSDLATMPPWGSS
Ga0207564_1057541	3300027438	Soil	ERRFAIRPTPVVQQSADAGGLIDRQGCKSDKSVPRNANVRILVQSGAWSSVDIDEDGNADGQVKTADLTSNLATMPPWG
Ga0207478_1005802	3300027450	Soil	KIFDERCFAIRPTPVVQQSADAAGGGGDRLGCKADNRVPKNANVRILAQSGAWSGVDVDEDGYADGQVRTADLTSDLATMPPWGSS
Ga0207862_11850261	3300027703	Tropical Forest Soil	NQKIFDQRRFAVRTTPVFQESGGGGGLIDRRNCRSDNRVPRNANIRILVQSDAWSSVDIDEDGNPDGYVRTSDLTSNLATMPRWEPS
Ga0207428_101305973	3300027907	Populus Rhizosphere	NQTIFAQRRFVIRATPVVQQSADAGGGGDRHSCKPDSRVPRNANVRILAQSGAWSGVDVDEDGYADGQIRTVDLTPDLATMPPWGPTL
Ga0209583_106754631	3300027910	Watersheds	TRNQNIFDQRRFAIRATPVVQESGGGGGCKVDNRVPRNANVRILVQSGAWSGVDIDEDGNVDGQIRTSDLTSNLATMPPWGPS
Ga0307296_105723521	3300028819	Soil	GAWGAGKVDGSRNQKIFDQRRFAIRTTSVVQESGGGSGQSCKSDNRVPRNANVRILDQAGGWSSVDVDEDGNADGRIKASDLTPSLATMPAWNPTS
Ga0247827_100541784	3300028889	Soil	QRRFAIRLTPVVQQSADAAGGGGDRLGCKADNRVPKNANVRILAQSGAWSGVDVDEDGYADGQVRTADLTSDLATMPPWGSS
Ga0308181_11120242	3300031099	Soil	KVDGSRNQKIFDRRRFAIRTTSVVQESGGGSGQSCKSDNRVPRNANVRILDQAGGWSSVDVDEDGNADGRIKASDLTPSLATMPAWNPTS
Ga0170824_1124377732	3300031231	Forest Soil	GEVDRSRNQKIFDQRRFAIRATPVVQESGGGGGCKADNRVPRNANVRILVQSGAWSGVDIDEDGYADGQVRTSDLTSDLATMPPWGPS
Ga0170820_135932541	3300031446	Forest Soil	QKIFEQRRFAIRATPVESGGGGNCKLDNRVPKNANVRILAQSGAWSGVDIDEDGIADGQVRTSDLTSDLATMPPWGPSS
Ga0170818_1004022901	3300031474	Forest Soil	KIFDQRRFAIRATPVVQESGGGGGCKADNRVPRNANVRILVQSGAWSGVDIDEDGYADGQVRTSDLTSDLATMPPWGPS
Ga0307468_1001828872	3300031740	Hardwood Forest Soil	GEVDRSRNQNIFDQRRFAIRPTPVVQQSADGEGGGSIDRQNCKSDSRVPRNANVRILVQSGAWSGVDIDEDGNPDGQIRTADLTSSLATMPPWDPSL
Ga0310900_100134111	3300031908	Soil	RFAIRATAVVQEGGTGGCKSDSRVPKNANVRVLAQSGEWSSVDVDEDGNPDGRIKLADLTTSLATMPPWA
Ga0310901_105900802	3300031940	Soil	RRFAIRPTPVVQQSADAGGLIDRQGCKSDKSVPRNANVRILVQSGAWSSVDIDEDGNADGQVKTADLTSNLATMPPWG
Ga0307470_109400941	3300032174	Hardwood Forest Soil	RRFAIRPTPVVQQSADGGGGGPIDRQNCKSDNRVPRNANVRILVQSGAWSSVDIDEDGNADGQVKTSDLTSSLATMPPWDPSL
Ga0307471_1032713371	3300032180	Hardwood Forest Soil	SRNQKIFDQRRFAIRPTPVVQQSADGGGGGPIDRQNCKSDNRVPRNANVRILVQSGAWSSVDIDEDGNADGQVKTSDLTSSLATMPPWDPSL
Ga0307472_1006714972	3300032205	Hardwood Forest Soil	IDKSRNQQIFDQRRFAIRPTPVVQQSADAAGGGGERQSCKPDSRVARNANVRILVQSGAWSGVDVDEDGIADGQVKTADLTSDLATMPPWGTSG
Ga0335071_104471433	3300032897	Soil	RFAIRATLVESSAVGGDRQGCKSDNRVPRNANVRILVQSGAWSGVDIDEDGSVDGQVRTADLTSNFATMPAWGQSS
Ga0310810_101492255	3300033412	Soil	GAWGAGEVDKSRNQKIFDQRRFAIRATPVVQDGGKDRQGCKPDKSVPRNANVRILAQSGAWCGVDVDEDGNADGQVRTADLTSNLATMPPWGSPS
Ga0326723_0083189_1083_1373	3300034090	Peat Soil	AGEVDRSRNQKIFDQRRFAVRTTPVFQESGEGDGLIDRQNCKSDNRIPRNANVRILVQSGAWSGVDIDEDGNPDGRVRTSDLTSNLATMPPWEPSS
Ga0370484_0069572_1_216	3300034125	Untreated Peat Soil	PVAQESGGGGGDRQGCKSDIRVPRNANVRILVQSGAWSGVDIDEDGYADGQVRTSDLTSNLATMPPWGPSS

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.52
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.52
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NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F065246

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences

Hidden Markov Model


Click on a Sequence Logo column to get its information.
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