NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300027450

3300027450: Soil microbial communities from Kellog Biological Station, Michigan, USA - Nitrogen cycling UWRJ-G07K3-12 (SPAdes)



Overview

Basic Information
IMG/M Taxon OID3300027450 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0095510 | Gp0072113 | Ga0207478
Sample NameSoil microbial communities from Kellog Biological Station, Michigan, USA - Nitrogen cycling UWRJ-G07K3-12 (SPAdes)
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size17370141
Sequencing Scaffolds13
Novel Protein Genes15
Associated Families15

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
Not Available8
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → Pseudolabrys taiwanensis1
All Organisms → cellular organisms → Bacteria1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium2
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameSoil Microbial Communities From Arlington Agricultural Research Station In Wisconsin And Kellogg Biological Station In Michigan, Replicating The Bioenergy Cropping Systems Trials (Bcsts)
TypeEnvironmental
TaxonomyEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil → Soil Microbial Communities From Arlington Agricultural Research Station In Wisconsin And Kellogg Biological Station In Michigan, Replicating The Bioenergy Cropping Systems Trials (Bcsts)

Alternative Ecosystem Assignments
Environment Ontology (ENVO)terrestrial biome → agricultural field → agricultural soil
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Soil (non-saline)

Location Information
LocationUSA: Michigan
CoordinatesLat. (o)42.4Long. (o)-85.37Alt. (m)N/ADepth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011297Metagenome / Metatranscriptome292Y
F018416Metagenome / Metatranscriptome235Y
F021340Metagenome219Y
F021569Metagenome / Metatranscriptome218Y
F024822Metagenome / Metatranscriptome204N
F025063Metagenome / Metatranscriptome203N
F031553Metagenome / Metatranscriptome182Y
F041476Metagenome160Y
F052268Metagenome143Y
F057972Metagenome / Metatranscriptome135N
F059765Metagenome133Y
F065246Metagenome / Metatranscriptome128Y
F074937Metagenome / Metatranscriptome119N
F081534Metagenome / Metatranscriptome114N
F096141Metagenome / Metatranscriptome105Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0207478_100143Not Available1101Open in IMG/M
Ga0207478_100580All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → Pseudolabrys taiwanensis823Open in IMG/M
Ga0207478_100742Not Available774Open in IMG/M
Ga0207478_101158All Organisms → cellular organisms → Bacteria695Open in IMG/M
Ga0207478_101521Not Available650Open in IMG/M
Ga0207478_101620Not Available640Open in IMG/M
Ga0207478_101703All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium632Open in IMG/M
Ga0207478_102123Not Available598Open in IMG/M
Ga0207478_102461Not Available574Open in IMG/M
Ga0207478_102892All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium548Open in IMG/M
Ga0207478_103127Not Available535Open in IMG/M
Ga0207478_103242Not Available530Open in IMG/M
Ga0207478_103351All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium524Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0207478_100143Ga0207478_1001432F031553MTLSFSTALARPIVLAILAVALAACTSRTQPAGMESMMRPIANGTPTGSPNAIVLRGTFVKLTGFPCHRSDPYVGGETVTFGGSDGSRTTIVTGSANWIGLPATSSAPLGQCRQVAPFTAELPPAARYVVLINDRRLPAVTLAELRAGGLRHTFRLPS
Ga0207478_100580Ga0207478_1005802F065246KIFDERCFAIRPTPVVQQSADAAGGGGDRLGCKADNRVPKNANVRILAQSGAWSGVDVDEDGYADGQVRTADLTSDLATMPPWGSS
Ga0207478_100742Ga0207478_1007421F024822VREPFIRIAGAILCALALSGCVDSSGPLLSDAQPVLGEQLRLQFYSLRKGTADEPEQATYKWDRGAYQRTGGGMTDISSFSVHPLARDIFVVQSAAAKRPGMFEYAVARRLVDGVYQVIAIDEADAGRVTRARFCKRASDSSCRIQT
Ga0207478_101158Ga0207478_1011582F021340KLQTFQAHRTIARANVARSQFWHVAIVTLFFVIVLGASLFLGTVMVIGTFHGVDPSNELTANGRAGRIARTLQDGTLCHYMIFDNKTAQTVEDRIGRCDENKPKPKQEKPATFTWGK
Ga0207478_101521Ga0207478_1015211F025063GSGDLIAWGPGGRSLVFARNGRIERAGCAPVRIRLVTVLTEKVEWALDDPGFCGPILSLSRSQAATYFSAASGDRLSVYLTGTVGIPHLTFEGVGMLSASAPAAFLLRPDASPRTSSGASREAGTMLGWKGIGGPVSVGDGEHVLSVHRVLAWSSDGSRVALLGRMGARSGVFVLFAGSGSGPRVPRYVMPAGRTIDGTFDAVGRLYVATDGAIYV
Ga0207478_101620Ga0207478_1016201F096141MCKGVPRRPKVSSSQRFGALQRLYITAAVFTAVSLVTPYNEQIFAASPDAAEGPEKTVPQGRDPPGNDNEDHSNPTTEHKGVIKPPQTGDEGIYTQAPNPNAGTEEEVIPPPGTPESQQPKVEPR
Ga0207478_101620Ga0207478_1016202F018416PTSSLAVKRCGLGAVIAAAYPLTHEYDAAHRLGHEALRPHYSPATLIYLNDIRGHSAVLALFDEVIAAR
Ga0207478_101703Ga0207478_1017031F057972MQEVRADGFDRLDPLGAASADPTIAPLPLLEPELPQYPLAMVEWHDAWFDLDLESPDGCRQDYLVHTIGFLVSEGPRFVSLAQEVLPDGEGLRAVTHIPLAIVERSGRANATLMFDVELLKVG
Ga0207478_102123Ga0207478_1021232F021569MRVVLLVVILALASLGWNWDARAEFNCFETPGEGSRCACIGANDCTEMKSSDNCKSEAACDKGELGAIICSC
Ga0207478_102461Ga0207478_1024611F059765DGLKIRLGRILAEEEGDGHVDWSKVDCLSKELLGELQMPVPLIVDEYLRGSDRRRQDMVFGHAQRGQLLQFLRSNGISML
Ga0207478_102892Ga0207478_1028922F052268DPEARVYPGLPGSWAGVPYDFVSGGAGLQFPGLPDEVVGCLSAS
Ga0207478_103127Ga0207478_1031271F011297LDMSTIAKIEADRIYDLILPETDGKETVTVPLSYLETVKTTGQKLESLAPAYITRALEKLSETAKVHRFRRKAVIPKESLAFVAAAFRKAAEAAERGPS
Ga0207478_103242Ga0207478_1032421F074937LLTRSNHLAMTDDSGGSGKTSPRLSWLQVGLLALSVVILAAVLGAILLRSGGDDTPSASAAPLDKRPVKVVITATESAGEEVTDGGIAGSGIFKASGAISDHGADTTYRKLTGPDDSVILLRYVTKGKKGTISYAVKIDTTRRPVRPRWRIWSATGAYKGLQGRGDESENAAYTVS
Ga0207478_103351Ga0207478_1033511F041476MFIKSSWISFIGVMLFVASASAASSVLQGIVKDAKGHPIEGADIRIVATKTGGLPTTIKT
Ga0207478_103723Ga0207478_1037231F081534MRRAFALLGTSAAIAVAWIALLPSQAIATVTGPCTVSIAGVDVTSGHDTPGGAVPLQSGSLVPIDGTARSRVTDLTYTVHIAGGEVQVGTVTIAQDGLGWSGTVDLESISNATVGLFEVTTEVQTTGQDCSGVAYVCVEG
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