Metagenome / Metatranscriptome Family F080249

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F080249
Family Type	Metagenome / Metatranscriptome
Number of Sequences	115
Average Sequence Length	73 residues
Representative Sequence	MGDDKKKTGTPDRNLISFKEKYEFDYAVKQLQKQVPDTTKQEAKQALTEAAKKISPSEGREKIMRAARKKLRS
Number of Associated Samples	96
Number of Associated Scaffolds	115

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	52.83 %
% of genes near scaffold ends (potentially truncated)	16.52 %
% of genes from short scaffolds (< 2000 bps)	55.65 %
Associated GOLD sequencing projects	90
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.63

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (87.826 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Aquatic → Freshwater → Groundwater → Contaminated → Groundwater (11.304 % of family members)
Environment Ontology (ENVO)	Unclassified (26.087 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (30.435 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 46.53% β-sheet: 0.00% Coil/Unstructured: 53.47%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.63
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.63
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 115 Family Scaffolds
PF01726	LexA_DNA_bind	4.35
PF00496	SBP_bac_5	1.74
PF02195	ParBc	1.74
PF14082	DUF4263	1.74
PF03401	TctC	0.87
PF08843	AbiEii	0.87
PF03887	YfbU	0.87
PF01555	N6_N4_Mtase	0.87
PF13458	Peripla_BP_6	0.87
PF06421	LepA_C	0.87
PF13489	Methyltransf_23	0.87
PF13776	DUF4172	0.87
PF00353	HemolysinCabind	0.87
PF00903	Glyoxalase	0.87
PF12705	PDDEXK_1	0.87
PF00899	ThiF	0.87
PF00892	EamA	0.87
PF01402	RHH_1	0.87
PF01588	tRNA_bind	0.87
PF00145	DNA_methylase	0.87
PF10412	TrwB_AAD_bind	0.87
PF12307	DUF3631	0.87
PF00270	DEAD	0.87
PF03473	MOSC	0.87
PF07715	Plug	0.87
PF13177	DNA_pol3_delta2	0.87
PF00271	Helicase_C	0.87
PF03404	Mo-co_dimer	0.87
PF06808	DctM	0.87
PF00378	ECH_1	0.87
PF00872	Transposase_mut	0.87
PF00589	Phage_integrase	0.87
PF08327	AHSA1	0.87
PF13393	tRNA-synt_His	0.87
PF05713	MobC	0.87
PF13031	DUF3892	0.87
PF10881	DUF2726	0.87
PF00580	UvrD-helicase	0.87
PF01381	HTH_3	0.87
PF09848	DUF2075	0.87
PF05990	DUF900	0.87
PF04909	Amidohydro_2	0.87
PF03713	DUF305	0.87
PF02796	HTH_7	0.87
PF12161	HsdM_N	0.87
PF13649	Methyltransf_25	0.87
PF09665	RE_Alw26IDE	0.87
PF08937	DUF1863	0.87
PF13676	TIR_2	0.87
PF00202	Aminotran_3	0.87
PF01207	Dus	0.87
PF01098	FTSW_RODA_SPOVE	0.87
PF00132	Hexapep	0.87
PF00176	SNF2-rel_dom	0.87
PF16189	Creatinase_N_2	0.87
PF04998	RNA_pol_Rpb1_5	0.87
PF01844	HNH	0.87
PF09492	Pec_lyase	0.87
PF07669	Eco57I	0.87
PF08808	RES	0.87

COG ID	Name	Functional Category	% Frequency in 115 Family Scaffolds
COG0210	Superfamily I DNA or RNA helicase	Replication, recombination and repair [L]	0.87
COG0270	DNA-cytosine methylase	Replication, recombination and repair [L]	0.87
COG0481	Translation elongation factor EF-4, membrane-bound GTPase	Translation, ribosomal structure and biogenesis [J]	0.87
COG0772	Peptodoglycan polymerase FtsW/RodA/SpoVE	Cell cycle control, cell division, chromosome partitioning [D]	0.87
COG0863	DNA modification methylase	Replication, recombination and repair [L]	0.87
COG1041	tRNA G10 N-methylase Trm11	Translation, ribosomal structure and biogenesis [J]	0.87
COG1074	3Ã¢â‚¬â„¢-5Ã¢â‚¬â„¢ helicase subunit RecB of the DNA repair enzyme RecBCD (exonuclease V)	Replication, recombination and repair [L]	0.87
COG2189	Adenine specific DNA methylase Mod	Replication, recombination and repair [L]	0.87
COG2253	Predicted nucleotidyltransferase component of viral defense system	Defense mechanisms [V]	0.87
COG2517	Predicted RNA-binding protein, contains C-terminal EMAP domain	General function prediction only [R]	0.87
COG3181	Tripartite-type tricarboxylate transporter, extracytoplasmic receptor component TctC	Energy production and conversion [C]	0.87
COG3328	Transposase (or an inactivated derivative)	Mobilome: prophages, transposons [X]	0.87
COG3544	Uncharacterized conserved protein, DUF305 family	Function unknown [S]	0.87
COG3973	DNA helicase IV	Replication, recombination and repair [L]	0.87
COG4782	Esterase/lipase superfamily enzyme	General function prediction only [R]	0.87
COG5654	Predicted toxin component of a toxin-antitoxin system, contains RES domain	Defense mechanisms [V]	0.87
COG0042	tRNA-dihydrouridine synthase	Translation, ribosomal structure and biogenesis [J]	0.87
COG0073	tRNA-binding EMAP/Myf domain	Translation, ribosomal structure and biogenesis [J]	0.87
COG0086	DNA-directed RNA polymerase, beta' subunit/160 kD subunit	Transcription [K]	0.87

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	87.83 %
Unclassified	root	N/A	12.17 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	87.83 %
Unclassified	root	N/A	12.17 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	87.83 %
Unclassified	root	N/A	12.17 %

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	26.96 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	17.39 %
Unclassified	root	N/A	12.17 %
FCB group	clade	All Organisms → cellular organisms → Bacteria → FCB group	5.22 %
Bacteria incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis	4.35 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1.74 %
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	0.87 %
Spirochaetes	phylum	All Organisms → cellular organisms → Bacteria → Spirochaetes	0.87 %

Name	Rank	Taxonomy	Distribution
Blastocatellia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia	26.96 %
Unclassified	root	N/A	12.17 %
Bacteroidetes/Chlorobi group	clade	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group	5.22 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	5.22 %
Bacteria candidate phyla	clade	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla	4.35 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	2.61 %
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	0.87 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.87 %
unclassified Spirochaetota	no rank	All Organisms → cellular organisms → Bacteria → Spirochaetes → unclassified Spirochaetota	0.87 %
Firmicutes	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	0.87 %

Name	Rank	Taxonomy	Distribution
unclassified Blastocatellia	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia	26.96 %
Unclassified	root	N/A	12.17 %
Bacteroidetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	5.22 %
Patescibacteria group	clade	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group	3.48 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2.61 %
Xanthomonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales	1.74 %
Candidatus Peregrinibacteria	phylum	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Peregrinibacteria	0.87 %
Spirochaetota bacterium	species	All Organisms → cellular organisms → Bacteria → Spirochaetes → unclassified Spirochaetota → Spirochaetota bacterium	0.87 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	0.87 %
Rubrobacteria	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria	0.87 %
Bacilli	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli	0.87 %
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	0.87 %

Name	Rank	Taxonomy	Distribution
Blastocatellia bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium	26.96 %
Unclassified	root	N/A	12.17 %
unclassified Bacteroidetes	no rank	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes	4.35 %
Parcubacteria group	clade	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → Parcubacteria group	3.48 %
Rhodanobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Rhodanobacteraceae	1.74 %
Alphaproteobacteria bacterium 65-7	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 65-7	0.87 %
Bacillales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales	0.87 %
Rubrobacterales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales	0.87 %
Xanthobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae	0.87 %
Candidatus Peregrinibacteria	phylum	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Peregrinibacteria	0.87 %
Spirochaetota bacterium	species	All Organisms → cellular organisms → Bacteria → Spirochaetes → unclassified Spirochaetota → Spirochaetota bacterium	0.87 %
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	0.87 %

Name	Rank	Taxonomy	Distribution
Blastocatellia bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium	26.96 %
Unclassified	root	N/A	12.17 %
Bacteroidetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium	4.35 %
Candidatus Parcubacteria	phylum	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → Parcubacteria group → Candidatus Parcubacteria	1.74 %
Rhodanobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Rhodanobacteraceae	1.74 %
Candidatus Nomurabacteria	phylum	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → Parcubacteria group → Candidatus Nomurabacteria	0.87 %
unclassified Parcubacteria group	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → Parcubacteria group → unclassified Parcubacteria group	0.87 %
Rubrobacteraceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae	0.87 %
Paenibacillaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales → Paenibacillaceae	0.87 %
Pseudolabrys	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys	0.87 %
Alphaproteobacteria bacterium 65-7	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 65-7	0.87 %
Candidatus Peregrinibacteria	phylum	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Peregrinibacteria	0.87 %
Spirochaetota bacterium	species	All Organisms → cellular organisms → Bacteria → Spirochaetes → unclassified Spirochaetota → Spirochaetota bacterium	0.87 %
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	0.87 %

Name	Rank	Taxonomy	Distribution
Blastocatellia bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium	26.96 %
Unclassified	root	N/A	12.17 %
Bacteroidetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium	4.35 %
Rhodanobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Rhodanobacteraceae	1.74 %
unclassified Pseudolabrys	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → unclassified Pseudolabrys	0.87 %
Parcubacteria group bacterium RIFCSPHIGHO2_01_FULL_47_10b	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → Parcubacteria group → unclassified Parcubacteria group → Parcubacteria group bacterium RIFCSPHIGHO2_01_FULL_47_10b	0.87 %
Rubrobacter	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → Rubrobacter	0.87 %
Paenibacillus	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales → Paenibacillaceae → Paenibacillus	0.87 %
unclassified Parcubacteria	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → Parcubacteria group → Candidatus Parcubacteria → unclassified Parcubacteria	0.87 %
Candidatus Nomurabacteria	phylum	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → Parcubacteria group → Candidatus Nomurabacteria	0.87 %
Alphaproteobacteria bacterium 65-7	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 65-7	0.87 %
Candidatus Peregrinibacteria	phylum	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Peregrinibacteria	0.87 %
Spirochaetota bacterium	species	All Organisms → cellular organisms → Bacteria → Spirochaetes → unclassified Spirochaetota → Spirochaetota bacterium	0.87 %
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	0.87 %

Name	Rank	Taxonomy	Distribution
Blastocatellia bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium	26.96 %
Unclassified	root	N/A	12.17 %
Bacteroidetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium	4.35 %
Rhodanobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Rhodanobacteraceae	1.74 %
Pseudolabrys sp. Root1462	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → unclassified Pseudolabrys → Pseudolabrys sp. Root1462	0.87 %
Candidatus Parcubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → Parcubacteria group → Candidatus Parcubacteria → unclassified Parcubacteria → Candidatus Parcubacteria bacterium	0.87 %
Paenibacillus antibioticophila	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales → Paenibacillaceae → Paenibacillus → Paenibacillus antibioticophila	0.87 %
Rubrobacter xylanophilus	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → Rubrobacter → Rubrobacter xylanophilus	0.87 %
Parcubacteria group bacterium RIFCSPHIGHO2_01_FULL_47_10b	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → Parcubacteria group → unclassified Parcubacteria group → Parcubacteria group bacterium RIFCSPHIGHO2_01_FULL_47_10b	0.87 %
Candidatus Nomurabacteria	phylum	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → Parcubacteria group → Candidatus Nomurabacteria	0.87 %
Alphaproteobacteria bacterium 65-7	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 65-7	0.87 %
Candidatus Peregrinibacteria	phylum	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Peregrinibacteria	0.87 %
Spirochaetota bacterium	species	All Organisms → cellular organisms → Bacteria → Spirochaetes → unclassified Spirochaetota → Spirochaetota bacterium	0.87 %
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	0.87 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2010549000\|RicEn_FSXC3319_g1	All Organisms → cellular organisms → Bacteria	798	Open in IMG/M
3300000571\|JGI1358J11329_10010129	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → Rubrobacter → Rubrobacter xylanophilus	5748	Open in IMG/M
3300000571\|JGI1358J11329_10070268	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium	1259	Open in IMG/M
3300000574\|JGI1357J11328_10042026	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → Parcubacteria group → Candidatus Parcubacteria	1900	Open in IMG/M
3300001380\|JGI1356J14229_10203481	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium	564	Open in IMG/M
3300001605\|Draft_10137896	Not Available	1616	Open in IMG/M
3300001605\|Draft_10668548	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium	524	Open in IMG/M
3300002461\|AADWTP_10030597	All Organisms → cellular organisms → Bacteria → Proteobacteria	4407	Open in IMG/M
3300002502\|C687J35174_10793266	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium	568	Open in IMG/M
3300003313\|P32013IDBA_1018464	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	2720	Open in IMG/M
3300003319\|soilL2_10207108	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium	1757	Open in IMG/M
3300003320\|rootH2_10186964	All Organisms → cellular organisms → Bacteria	1511	Open in IMG/M
3300004210\|Ga0066639_10347205	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → Parcubacteria group → Candidatus Nomurabacteria	884	Open in IMG/M
3300005336\|Ga0070680_100006611	All Organisms → cellular organisms → Bacteria → Proteobacteria	8815	Open in IMG/M
3300005336\|Ga0070680_100759888	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales → Paenibacillaceae → Paenibacillus → Paenibacillus antibioticophila	835	Open in IMG/M
3300005337\|Ga0070682_100618771	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium	858	Open in IMG/M
3300005337\|Ga0070682_101028346	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium	685	Open in IMG/M
3300005441\|Ga0070700_100480156	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium	952	Open in IMG/M
3300005455\|Ga0070663_100256920	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium	1385	Open in IMG/M
3300005458\|Ga0070681_10035025	All Organisms → cellular organisms → Bacteria → Proteobacteria	5042	Open in IMG/M
3300005518\|Ga0070699_101476828	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → Parcubacteria group → unclassified Parcubacteria group → Parcubacteria group bacterium RIFCSPHIGHO2_01_FULL_47_10b	623	Open in IMG/M
3300005539\|Ga0068853_100014546	All Organisms → cellular organisms → Bacteria → Proteobacteria	6450	Open in IMG/M
3300005544\|Ga0070686_101004395	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium	684	Open in IMG/M
3300006178\|Ga0075367_10153825	All Organisms → cellular organisms → Bacteria	1428	Open in IMG/M
3300006353\|Ga0075370_10932383	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium	531	Open in IMG/M
3300006417\|Ga0069787_10117000	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	16895	Open in IMG/M
3300006847\|Ga0075431_101306433	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium	686	Open in IMG/M
3300006871\|Ga0075434_100270375	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium	1719	Open in IMG/M
3300007351\|Ga0104751_1220776	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium	655	Open in IMG/M
3300008886\|Ga0115930_1000327	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	70744	Open in IMG/M
3300009031\|Ga0103682_10018444	All Organisms → cellular organisms → Bacteria	4324	Open in IMG/M
3300009093\|Ga0105240_10420849	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium	1501	Open in IMG/M
3300009101\|Ga0105247_11363617	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium	572	Open in IMG/M
3300009156\|Ga0111538_11822330	All Organisms → cellular organisms → Bacteria	766	Open in IMG/M
3300009692\|Ga0116171_10370891	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium	767	Open in IMG/M
3300010045\|Ga0126311_10002747	All Organisms → cellular organisms → Bacteria	8909	Open in IMG/M
3300010356\|Ga0116237_10090906	All Organisms → cellular organisms → Bacteria	3166	Open in IMG/M
3300010371\|Ga0134125_10620628	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium	1194	Open in IMG/M
3300010373\|Ga0134128_10002813	All Organisms → cellular organisms → Bacteria → Proteobacteria	21377	Open in IMG/M
3300010397\|Ga0134124_11313829	All Organisms → cellular organisms → Bacteria	747	Open in IMG/M
3300010397\|Ga0134124_11822844	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium	643	Open in IMG/M
3300010397\|Ga0134124_12590652	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium	550	Open in IMG/M
3300012202\|Ga0137363_10043387	All Organisms → cellular organisms → Bacteria	3181	Open in IMG/M
3300012202\|Ga0137363_10385705	Not Available	1165	Open in IMG/M
3300012205\|Ga0137362_10803121	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium	806	Open in IMG/M
3300012212\|Ga0150985_106845717	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium	767	Open in IMG/M
3300012212\|Ga0150985_119547222	All Organisms → cellular organisms → Bacteria	2026	Open in IMG/M
3300012469\|Ga0150984_103830429	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	771	Open in IMG/M
3300012469\|Ga0150984_109032288	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium	656	Open in IMG/M
3300012469\|Ga0150984_115325741	All Organisms → cellular organisms → Bacteria	1669	Open in IMG/M
3300012685\|Ga0137397_10200357	All Organisms → cellular organisms → Bacteria	1485	Open in IMG/M
3300012943\|Ga0164241_10000027	All Organisms → cellular organisms → Bacteria → Proteobacteria	400514	Open in IMG/M
3300012943\|Ga0164241_10004280	All Organisms → cellular organisms → Bacteria → Proteobacteria	13921	Open in IMG/M
3300012943\|Ga0164241_10441592	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium	935	Open in IMG/M
3300012986\|Ga0164304_10619789	All Organisms → cellular organisms → Bacteria	810	Open in IMG/M
3300013297\|Ga0157378_12100590	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium	615	Open in IMG/M
3300013772\|Ga0120158_10285981	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium	805	Open in IMG/M
3300014059\|Ga0119868_1017927	All Organisms → cellular organisms → Bacteria	2286	Open in IMG/M
3300014208\|Ga0172379_10011802	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Peregrinibacteria	10335	Open in IMG/M
3300014208\|Ga0172379_10634703	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium	658	Open in IMG/M
3300017651\|Ga0182742_1002396	All Organisms → cellular organisms → Bacteria → Proteobacteria	20804	Open in IMG/M
3300018429\|Ga0190272_11027362	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium	790	Open in IMG/M
3300018481\|Ga0190271_10616410	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium	1205	Open in IMG/M
3300019360\|Ga0187894_10069601	All Organisms → cellular organisms → Bacteria → Proteobacteria	1973	Open in IMG/M
3300019775\|Ga0197853_1041513	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	51391	Open in IMG/M
3300020027\|Ga0193752_1006768	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Rhodanobacteraceae	6690	Open in IMG/M
3300020213\|Ga0163152_10209485	All Organisms → cellular organisms → Bacteria	1052	Open in IMG/M
3300020215\|Ga0196963_10187964	Not Available	891	Open in IMG/M
3300020591\|Ga0180223_1001428	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → unclassified Pseudolabrys → Pseudolabrys sp. Root1462	18511	Open in IMG/M
3300021074\|Ga0194044_10001161	All Organisms → cellular organisms → Bacteria	13413	Open in IMG/M
3300021339\|Ga0193706_1013353	All Organisms → cellular organisms → Bacteria	2729	Open in IMG/M
3300021363\|Ga0193699_10463802	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium	520	Open in IMG/M
3300021403\|Ga0210397_11357512	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	552	Open in IMG/M
3300021605\|Ga0194054_10251031	Not Available	585	Open in IMG/M
3300022549\|Ga0212091_10469112	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium	524	Open in IMG/M
3300023049\|Ga0136601_1000836	All Organisms → cellular organisms → Bacteria	11554	Open in IMG/M
3300023270\|Ga0247784_1000047	All Organisms → cellular organisms → Bacteria → Proteobacteria	43042	Open in IMG/M
3300024347\|Ga0179591_1146559	All Organisms → cellular organisms → Bacteria	4059	Open in IMG/M
3300025015\|Ga0209210_1030223	All Organisms → cellular organisms → Bacteria	2033	Open in IMG/M
3300025317\|Ga0209541_10100981	All Organisms → cellular organisms → Bacteria	2931	Open in IMG/M
3300025323\|Ga0209542_10543610	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium	852	Open in IMG/M
3300025536\|Ga0207952_1044967	All Organisms → cellular organisms → Bacteria	784	Open in IMG/M
3300025912\|Ga0207707_10004898	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Rhodanobacteraceae	11766	Open in IMG/M
3300026041\|Ga0207639_10008725	All Organisms → cellular organisms → Bacteria → Proteobacteria	6959	Open in IMG/M
3300027815\|Ga0209726_10277003	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium	832	Open in IMG/M
3300027819\|Ga0209514_10008628	All Organisms → cellular organisms → Bacteria	11508	Open in IMG/M
3300027819\|Ga0209514_10029460	All Organisms → cellular organisms → Bacteria	4444	Open in IMG/M
3300027819\|Ga0209514_10047240	All Organisms → cellular organisms → Bacteria	3059	Open in IMG/M
3300027835\|Ga0209515_10021767	All Organisms → cellular organisms → Bacteria	6031	Open in IMG/M
3300027835\|Ga0209515_10043331	All Organisms → cellular organisms → Bacteria	3597	Open in IMG/M
3300027835\|Ga0209515_10162376	All Organisms → cellular organisms → Bacteria	1383	Open in IMG/M
3300027909\|Ga0209382_11067047	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium	837	Open in IMG/M
3300028028\|Ga0265292_1000252	All Organisms → cellular organisms → Bacteria	91748	Open in IMG/M
3300028738\|Ga0302292_1180313	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → Parcubacteria group → Candidatus Parcubacteria → unclassified Parcubacteria → Candidatus Parcubacteria bacterium	703	Open in IMG/M
3300029288\|Ga0265297_10253177	All Organisms → cellular organisms → Bacteria → Spirochaetes → unclassified Spirochaetota → Spirochaetota bacterium	1251	Open in IMG/M
3300029989\|Ga0311365_10705767	Not Available	874	Open in IMG/M
3300031521\|Ga0311364_10631917	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium	1079	Open in IMG/M
3300031740\|Ga0307468_100010938	All Organisms → cellular organisms → Bacteria	3552	Open in IMG/M
3300031949\|Ga0214473_11484110	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	685	Open in IMG/M
3300032144\|Ga0315910_10003941	All Organisms → cellular organisms → Bacteria	12503	Open in IMG/M
3300032157\|Ga0315912_11295626	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium	576	Open in IMG/M
3300032173\|Ga0315268_10001563	All Organisms → cellular organisms → Bacteria	26325	Open in IMG/M
3300032770\|Ga0335085_10000076	All Organisms → cellular organisms → Bacteria	339163	Open in IMG/M
3300033134\|Ga0335073_10572971	All Organisms → cellular organisms → Bacteria	1269	Open in IMG/M
3300033233\|Ga0334722_10001016	All Organisms → cellular organisms → Bacteria	37292	Open in IMG/M
3300034155\|Ga0370498_032206	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 65-7	1134	Open in IMG/M

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	73.91%
Host-Associated	Host-Associated	18.26%
Engineered	Engineered	7.83%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	46.09%
Aquatic	Environmental → Aquatic	27.83%
Plants	Host-Associated → Plants	17.39%
Wastewater	Engineered → Wastewater	5.22%
Solid Waste	Engineered → Solid Waste	1.74%
Microbial	Host-Associated → Microbial	0.87%
Lab Enrichment	Engineered → Lab Enrichment	0.87%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	40.00%
Freshwater	Environmental → Aquatic → Freshwater	24.35%
Rhizosphere	Host-Associated → Plants → Rhizosphere	10.43%
Rhizoplane	Host-Associated → Plants → Rhizoplane	4.35%
Marine	Environmental → Aquatic → Marine	2.61%
Peat	Environmental → Terrestrial → Peat	2.61%
Deep Subsurface	Environmental → Terrestrial → Deep Subsurface	1.74%
Roots	Host-Associated → Plants → Roots	1.74%
Landfill	Engineered → Solid Waste → Landfill	1.74%
Anaerobic Digestor	Engineered → Wastewater → Anaerobic Digestor	1.74%
Industrial Wastewater	Engineered → Wastewater → Industrial Wastewater	1.74%
Non-Marine Saline And Alkaline	Environmental → Aquatic → Non-Marine Saline And Alkaline	0.87%
Plant Litter	Environmental → Terrestrial → Plant Litter	0.87%
Cave	Environmental → Terrestrial → Cave	0.87%
Bacteria	Host-Associated → Microbial → Bacteria	0.87%
Rhizome	Host-Associated → Plants → Rhizome	0.87%
Activated Sludge	Engineered → Wastewater → Activated Sludge	0.87%
Nutrient Removal	Engineered → Wastewater → Nutrient Removal	0.87%
Defined Media	Engineered → Lab Enrichment → Defined Media	0.87%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	26.09%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater	16.52%
Loam	Environmental → Terrestrial → Soil → Loam	9.57%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	6.96%
Lake	Environmental → Aquatic → Freshwater → Lake	6.09%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	3.48%
Soil	Host-Associated → Plants → Rhizosphere → Soil	3.48%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	2.61%
Drinking Water	Environmental → Aquatic → Freshwater → Drinking Water	1.74%
Unclassified	Environmental → Aquatic → Marine → Unclassified	1.74%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	1.74%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	1.74%
Bulk Soil	Host-Associated → Plants → Roots → Bulk Soil	1.74%
Unclassified	Engineered → Solid Waste → Landfill → Unclassified	1.74%
Unclassified	Engineered → Wastewater → Anaerobic Digestor → Unclassified	1.74%
Petrochemical	Engineered → Wastewater → Industrial Wastewater → Petrochemical	1.74%
Oceanic	Environmental → Aquatic → Marine → Oceanic	0.87%
Saline	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline	0.87%
Sand	Environmental → Terrestrial → Soil → Sand	0.87%
Unclassified	Environmental → Terrestrial → Deep Subsurface → Unclassified	0.87%
Aquifer	Environmental → Terrestrial → Deep Subsurface → Aquifer	0.87%
Unclassified	Environmental → Terrestrial → Plant Litter → Unclassified	0.87%
Unclassified	Environmental → Terrestrial → Cave → Unclassified	0.87%
Unclassified	Host-Associated → Microbial → Bacteria → Unclassified	0.87%
Endophytes	Host-Associated → Plants → Rhizoplane → Endophytes	0.87%
Unclassified	Host-Associated → Plants → Rhizome → Unclassified	0.87%
Unclassified	Engineered → Wastewater → Activated Sludge → Unclassified	0.87%
Biological Phosphorus Removal	Engineered → Wastewater → Nutrient Removal → Biological Phosphorus Removal	0.87%
Anaerobic Media	Engineered → Lab Enrichment → Defined Media → Anaerobic Media	0.87%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	21.74%
Contaminated	Environmental → Aquatic → Freshwater → Groundwater → Contaminated	11.30%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	7.83%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	6.96%
Unclassified	Environmental → Aquatic → Freshwater → Groundwater → Unclassified	5.22%
Unclassified	Environmental → Aquatic → Freshwater → Lake → Unclassified	4.35%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	3.48%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	2.61%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	2.61%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment	1.74%
Unclassified	Environmental → Aquatic → Marine → Unclassified → Unclassified	1.74%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	1.74%
Unclassified	Environmental → Terrestrial → Soil → Loam → Unclassified	1.74%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	1.74%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	1.74%
Unclassified	Host-Associated → Plants → Roots → Bulk Soil → Unclassified	1.74%
Unclassified	Engineered → Solid Waste → Landfill → Unclassified → Unclassified	1.74%
Unclassified	Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified	1.74%
Unclassified	Engineered → Wastewater → Industrial Wastewater → Petrochemical → Unclassified	1.74%
Unclassified	Environmental → Aquatic → Freshwater → Drinking Water → Unclassified	0.87%
Chlorinated	Environmental → Aquatic → Freshwater → Drinking Water → Chlorinated	0.87%
Unclassified	Environmental → Aquatic → Marine → Oceanic → Unclassified	0.87%
Unclassified	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified	0.87%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	0.87%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	0.87%
Uranium Contaminated	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated	0.87%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	0.87%
Desert	Environmental → Terrestrial → Soil → Sand → Desert	0.87%
Unclassified	Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified	0.87%
Unclassified	Environmental → Terrestrial → Deep Subsurface → Aquifer → Unclassified	0.87%
Unclassified	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified	0.87%
Unclassified	Environmental → Terrestrial → Cave → Unclassified → Unclassified	0.87%
Unclassified	Host-Associated → Microbial → Bacteria → Unclassified → Unclassified	0.87%
Unclassified	Host-Associated → Plants → Rhizoplane → Endophytes → Unclassified	0.87%
Unclassified	Host-Associated → Plants → Rhizome → Unclassified → Unclassified	0.87%
Unclassified	Engineered → Wastewater → Activated Sludge → Unclassified → Unclassified	0.87%
Activated Sludge	Engineered → Wastewater → Nutrient Removal → Biological Phosphorus Removal → Activated Sludge	0.87%
Unclassified	Engineered → Lab Enrichment → Defined Media → Anaerobic Media → Unclassified	0.87%

Habitat	Taxonomy	Distribution
Groundwater	Environmental → Aquatic → Freshwater → Groundwater → Contaminated → Groundwater	11.30%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	9.57%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	5.22%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	4.35%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	4.35%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	3.48%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Groundwater	2.61%
Fen	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Fen	2.61%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere	2.61%
Freshwater	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater	1.74%
Anoxic Zone Freshwater	Environmental → Aquatic → Freshwater → Lake → Unclassified → Anoxic Zone Freshwater	1.74%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment	1.74%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Groundwater	1.74%
Marine	Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine	1.74%
Compost	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Compost	1.74%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	1.74%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	1.74%
Soil	Environmental → Terrestrial → Soil → Loam → Unclassified → Soil	1.74%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere	1.74%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	1.74%
Populus Endosphere	Host-Associated → Plants → Roots → Bulk Soil → Unclassified → Populus Endosphere	1.74%
Landfill Leachate	Engineered → Solid Waste → Landfill → Unclassified → Unclassified → Landfill Leachate	1.74%
Anaerobic Digestor Sludge	Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge	1.74%
Hydrocarbon Resource Environments	Engineered → Wastewater → Industrial Wastewater → Petrochemical → Unclassified → Hydrocarbon Resource Environments	1.74%
Freshwater Microbial Mat	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Microbial Mat	0.87%
Freshwater	Environmental → Aquatic → Freshwater → Drinking Water → Unclassified → Freshwater	0.87%
Groundwater	Environmental → Aquatic → Freshwater → Drinking Water → Chlorinated → Groundwater	0.87%
Contaminated Groundwater	Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Contaminated Groundwater	0.87%
Deep Ocean	Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean	0.87%
Saline Lake	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Lake	0.87%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	0.87%
Ore Pile And Mine Drainage Contaminated Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Ore Pile And Mine Drainage Contaminated Soil	0.87%
Sugarcane Root And Bulk Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Sugarcane Root And Bulk Soil	0.87%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Permafrost	0.87%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	0.87%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.87%
Soil	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated → Soil	0.87%
Untreated Peat Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Untreated Peat Soil	0.87%
Bog	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Bog	0.87%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	0.87%
Soil	Environmental → Terrestrial → Soil → Sand → Desert → Soil	0.87%
Serpentinite Rock And Fluid	Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Serpentinite Rock And Fluid	0.87%
Deep Subsurface Aquifer	Environmental → Terrestrial → Deep Subsurface → Aquifer → Unclassified → Deep Subsurface Aquifer	0.87%
Plant Litter	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified → Plant Litter	0.87%
Microbial Mat On Rocks	Environmental → Terrestrial → Cave → Unclassified → Unclassified → Microbial Mat On Rocks	0.87%
Micrasterias Crux-Melitensis (Mzch 98) Associated	Host-Associated → Microbial → Bacteria → Unclassified → Unclassified → Micrasterias Crux-Melitensis (Mzch 98) Associated	0.87%
Rice Endophytes	Host-Associated → Plants → Rhizoplane → Endophytes → Unclassified → Rice Endophytes	0.87%
Sugarcane Root And Bulk Soil	Host-Associated → Plants → Rhizome → Unclassified → Unclassified → Sugarcane Root And Bulk Soil	0.87%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.87%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.87%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.87%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.87%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	0.87%
Activated Sludge	Engineered → Wastewater → Activated Sludge → Unclassified → Unclassified → Activated Sludge	0.87%
Enhanced Biological Phosphorus Removal Bioreactor	Engineered → Wastewater → Nutrient Removal → Biological Phosphorus Removal → Activated Sludge → Enhanced Biological Phosphorus Removal Bioreactor	0.87%
Enriched Sediment	Engineered → Lab Enrichment → Defined Media → Anaerobic Media → Unclassified → Enriched Sediment	0.87%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2010549000	Rice endophytes microbial communities from Berkeley, California, USA	Host-Associated	Open in IMG/M
3300000571	Subsurface groundwater microbial communities from S. Glens Falls, New York, USA - GMW60B uncontaminated upgradient, 5.4 m	Environmental	Open in IMG/M
3300000574	Subsurface groundwater microbial communities from S. Glens Falls, New York, USA - GMW46 contaminated, 5.4 m	Environmental	Open in IMG/M
3300000961	Marine microbial communities from the Deep Pacific Ocean - MP1649	Environmental	Open in IMG/M
3300001380	Subsurface groundwater microbial communities from S. Glens Falls, New York, USA - GMW37 contaminated, 5.8 m	Environmental	Open in IMG/M
3300001605	Tailings pond microbial communities from Northern Alberta - Syncrude Mildred Lake Settling Basin	Engineered	Open in IMG/M
3300002461	Freshwater microbial communities from a drinking water treatment plant in Ann Arbor, Michigan, USA	Environmental	Open in IMG/M
3300002502	Soil microbial communities from Rifle, Colorado - Rifle CSP2_plank highO2_0.1	Environmental	Open in IMG/M
3300003313	Ore pile and mine drainage contaminated soil microbial communities from Mina do Sossego, Brazil - P3 sample	Environmental	Open in IMG/M
3300003319	Sugarcane bulk soil Sample L2	Environmental	Open in IMG/M
3300003320	Sugarcane root Sample H2	Host-Associated	Open in IMG/M
3300004210	Groundwater microbial communities from aquifer - Crystal Geyser CG10_big_fil_rev_8/21/14_0.10	Environmental	Open in IMG/M
3300005336	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG	Environmental	Open in IMG/M
3300005337	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG	Environmental	Open in IMG/M
3300005441	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG	Environmental	Open in IMG/M
3300005455	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG	Host-Associated	Open in IMG/M
3300005458	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG	Environmental	Open in IMG/M
3300005518	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG	Environmental	Open in IMG/M
3300005539	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2	Host-Associated	Open in IMG/M
3300005544	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3L metaG	Environmental	Open in IMG/M
3300006178	Populus root and rhizosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2	Host-Associated	Open in IMG/M
3300006353	Populus root and rhizosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5	Host-Associated	Open in IMG/M
3300006417	Combined Assembly of Gp0110018, Gp0110022, Gp0110020	Engineered	Open in IMG/M
3300006847	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5	Host-Associated	Open in IMG/M
3300006871	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3	Host-Associated	Open in IMG/M
3300007351	Combined Assembly of Gp0115775, Gp0115815	Environmental	Open in IMG/M
3300008886	Microbial communities associated with unicellular green alga Micrasterias crux-melitensis, Germany - (MZCH: 98)	Host-Associated	Open in IMG/M
3300009031	Microbial communities from groundwater in Rifle, Colorado, USA - 3D_0.1um	Environmental	Open in IMG/M
3300009093	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG	Host-Associated	Open in IMG/M
3300009101	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG	Host-Associated	Open in IMG/M
3300009156	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)	Host-Associated	Open in IMG/M
3300009692	Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from Japan - AD_JPNHW2_MetaG	Engineered	Open in IMG/M
3300010045	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot61	Environmental	Open in IMG/M
3300010356	AD_USDEca	Engineered	Open in IMG/M
3300010371	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-1	Environmental	Open in IMG/M
3300010373	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-4	Environmental	Open in IMG/M
3300010397	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-4	Environmental	Open in IMG/M
3300012202	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaG	Environmental	Open in IMG/M
3300012205	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaG	Environmental	Open in IMG/M
3300012212	Combined assembly of Hopland grassland soil	Host-Associated	Open in IMG/M
3300012469	Combined assembly of Soil carbon rhizosphere	Host-Associated	Open in IMG/M
3300012685	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz1.16 metaG	Environmental	Open in IMG/M
3300012943	Backyard soil microbial communities from Emeryville, California, USA - Original compost - Back yard soil (BY)	Environmental	Open in IMG/M
3300012986	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_217_MG	Environmental	Open in IMG/M
3300013122 (restricted)	Freshwater microbial communities from Kabuno Bay, South-Kivu, Congo ? kab_092012_10.3m	Environmental	Open in IMG/M
3300013123 (restricted)	Freshwater microbial communities from Kabuno Bay, South-Kivu, Congo ? kab_022012_11m	Environmental	Open in IMG/M
3300013297	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG	Host-Associated	Open in IMG/M
3300013772	Permafrost microbial communities from Nunavut, Canada - A10_80_0.25M	Environmental	Open in IMG/M
3300014059	Activated sludge microbial communities from Shanghai, China - membrane bioreactor - Membrane foulants	Engineered	Open in IMG/M
3300014208	Groundwater microbial communities from an aquifer near a municipal landfill in Southern Ontario, Canada - Groundwater well OW334 metaG	Environmental	Open in IMG/M
3300014838	Permafrost microbial communities from Stordalen Mire, Sweden - 812S3M metaG (Illumina Assembly)	Environmental	Open in IMG/M
3300014968	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG	Host-Associated	Open in IMG/M
3300017651	Enriched Miracle-Growth compost microbial communities from Emeryville, California, USA - eDNA 5th pass 37_C BE-Lig MG (version 2)	Environmental	Open in IMG/M
3300018429	Populus adjacent soil microbial communities from riparian zone of Shoshone River, Wyoming, USA - 504 T	Environmental	Open in IMG/M
3300018481	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 356 T	Environmental	Open in IMG/M
3300019360	White microbial mat communities from a lava cave in the Kipuka Kanohina Cave System on the Island of Hawaii, USA - GBC170108-1 metaG	Environmental	Open in IMG/M
3300019775	Lab enriched sediment microbial communities from hydrocarbon-contaminated retail site, Toronto, Canada - S1, HI.1247_001	Engineered	Open in IMG/M
3300020027	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H1c1	Environmental	Open in IMG/M
3300020213	Freshwater microbial mat bacterial communities from Lake Vanda, McMurdo Dry Valleys, Antarctica - Oligotrophic Lake LV.19.MP8.IB-2	Environmental	Open in IMG/M
3300020215	Soil microbial communities from Anza Borrego desert, Southern California, United States - S1_5	Environmental	Open in IMG/M
3300020415	Marine microbial communities from Tara Oceans - TARA_B100001146 (ERX555973-ERR599166)	Environmental	Open in IMG/M
3300020443	Marine microbial communities from Tara Oceans - TARA_B100001179 (ERX556000-ERR598944)	Environmental	Open in IMG/M
3300020591	Enriched Organic Plus compost microbial communities from Emeryville, California, USA - eDNA 5th pass 30_C Kraft OP (version 2)	Environmental	Open in IMG/M
3300021074	Anoxic zone freshwater microbial communities from boreal shield lake in IISD Experimental Lakes Area, Ontario, Canada - Jun2016-L442-17m	Environmental	Open in IMG/M
3300021339	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U3c1	Environmental	Open in IMG/M
3300021363	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L3c2	Environmental	Open in IMG/M
3300021403	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-O	Environmental	Open in IMG/M
3300021605	Anoxic zone freshwater microbial communities from boreal shield lake in IISD Experimental Lakes Area, Ontario, Canada - Sep2016-L227-10m	Environmental	Open in IMG/M
3300022549	Cold Creek_combined assembly	Environmental	Open in IMG/M
3300023049	Saline lake microbial communities from Rauer Islands, Antarctica - Metagenome Filla 2 #699	Environmental	Open in IMG/M
3300023270	Plant litter microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-L169-409R-5	Environmental	Open in IMG/M
3300024347	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_08_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300025015	Contaminated groundwater microbial communities from Rifle, Colorado, USA - Rifle Groundwater A1 (SPAdes)	Environmental	Open in IMG/M
3300025317	Groundwater microbial communities from Rifle, Colorado - Rifle CSP2_plank lowO2_0.1 (SPAdes)	Environmental	Open in IMG/M
3300025323	Soil microbial communities from Rifle, Colorado - Rifle CSP2_plank highO2_0.1 (SPAdes)	Environmental	Open in IMG/M
3300025536	Serpentinite rock and fluid subsurface biosphere microbial communities from McLaughlin Reserve, California, USA - CR12Aug_8Ca (SPAdes)	Environmental	Open in IMG/M
3300025912	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes)	Environmental	Open in IMG/M
3300026041	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300027815	Subsurface groundwater microbial communities from S. Glens Falls, New York, USA - GMW46 contaminated, 5.4 m (SPAdes)	Environmental	Open in IMG/M
3300027819	Subsurface groundwater microbial communities from S. Glens Falls, New York, USA - GMW37 contaminated, 5.8 m (SPAdes)	Environmental	Open in IMG/M
3300027835	Subsurface groundwater microbial communities from S. Glens Falls, New York, USA - GMW60B uncontaminated upgradient, 5.4 m (SPAdes)	Environmental	Open in IMG/M
3300027909	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5 (SPAdes)	Host-Associated	Open in IMG/M
3300028028	Leachate microbial communities from a municipal landfill in Southern Ontario, Canada - Leachate well 296A	Engineered	Open in IMG/M
3300028738	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Fen_N2_1	Environmental	Open in IMG/M
3300029288	Leachate microbial communities from a municipal landfill in Southern Ontario, Canada - Leachate well 137-91	Engineered	Open in IMG/M
3300029989	III_Fen_N1 coassembly	Environmental	Open in IMG/M
3300031521	III_Fen_E2 coassembly	Environmental	Open in IMG/M
3300031740	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05	Environmental	Open in IMG/M
3300031949	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT98D197	Environmental	Open in IMG/M
3300032144	Garden soil microbial communities collected in Santa Monica, California, United States - Edamame soil	Environmental	Open in IMG/M
3300032157	Garden soil microbial communities collected in Santa Monica, California, United States - V. faba soil	Environmental	Open in IMG/M
3300032173	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - C1_top	Environmental	Open in IMG/M
3300032770	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.5	Environmental	Open in IMG/M
3300033134	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.2	Environmental	Open in IMG/M
3300033233	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - C3_bottom	Environmental	Open in IMG/M
3300034155	Peat soil microbial communities from wetlands in Alaska, United States - Frozen_pond_05D_17	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID	Sample Taxon ID	Habitat	Sequence
RicEn_196220	2010549000	Rice Endophytes	MIDATQRETPMTDNKQNKGTPDRNLISFKQKYEFDYAVKQLQKQIPDTTRQEAKDALAAAAKKISPSEGREKIMRAARKTLRD
JGI1358J11329_100101292	3300000571	Groundwater	MADNKNKVKEDRNLISFKENYEVYYAVNQLKKQFTDETKADIKEALFDAAKQVSPSEGREKIMRLARKELNN*
JGI1358J11329_100702682	3300000571	Groundwater	MTDNKKKTGKPDSYLISFKERYEFDYAVGQLQKQVSDTTKQEAKDALTKAAKKVNPSEGREKIMRAARKILNS*
JGI1357J11328_1000220211	3300000574	Groundwater	MADNKNKTGKPDIYLISFKEAYEVNYAVKQLQKQFPEKTKQVVKEALFEAAKIVDPSEGREKVMKQARKNLRD*
JGI1357J11328_100420262	3300000574	Groundwater	MADDKKKVKEDRNLISFKEHYEVYYAVNQLKKQFPDETKADIKDALFDAAKQVKPSEGREKIMRLARKDLRD*
JGI12026J13078_10122782	3300000961	Deep Ocean	MADNKSKRGKPDSYLISFKERYEVDYAVKQLQKQFPAKTKTEVKKALTKAASEIDPSRGRERVMKGARKLIKK*
JGI1356J14229_102034811	3300001380	Groundwater	MSDDKKKVKEDRNLISFKENYEVDYAVNQLKKQFPDETKKEIKEALFDAAKQVSPSEGREKIMRIARKD
Draft_101378962	3300001605	Hydrocarbon Resource Environments	MKLTTGEGKTMTDDKKNRGNPDRNLISFKEKYEFDYAVKQLQKQVPDTTRQEAKEALVSAAKQISPSEGREKIMRAARKVLRD*
Draft_106685481	3300001605	Hydrocarbon Resource Environments	GGEYGLMGSASINETHHRGGKTMADDKKNRGNPDRNLISFKEKYEFDYAVKQLQKQVPDTTRQDAKAALTAAAKQISPSEGREKIMRAARKVLRD*
AADWTP_100305977	3300002461	Freshwater	MADDKKNIGKPDRNLISFKEKYEFNYAAKQLQNQVADTTRQEAKDALTAAAKKVSPSEGREKIMRAARKILRD*
C687J35174_107932661	3300002502	Soil	MADDKNKKKEDANLISFKENYEVYYAVNQLKKEFPDETKADIKEALFDAAKQVKPSEGREKIMRLVRKDLKD*
P32013IDBA_10184643	3300003313	Ore Pile And Mine Drainage Contaminated Soil	VADDKSKTGTPDRNLISFKQKYEVDYAVRQLQKRFPEETRAAVKEALFSAAKKVSPSEGREKVMRAASKKLG*
soilL2_102071081	3300003319	Sugarcane Root And Bulk Soil	MADDKKNVGNPDRNLISFKEKYEFDYAAKQLQKQVPDTTRQEAKEALTKAARQVSPSEGREKVMRAARKILKD*
rootH2_101869641	3300003320	Sugarcane Root And Bulk Soil	MADDKKKVGRQDDNLISFKQKYEFAYAQATKNKFPDETKQEVKDALTDAARKISPSEGREKIMRQARKNQGLVLSQLYK
Ga0066639_103472052	3300004210	Groundwater	MADNKNKVKEDRNLISFKENYEVYYAVNQLKKQFPDETKSNIKEALFDAAKQVSPSEGREKIMRLTRKELNS*
Ga0070680_1000066112	3300005336	Corn Rhizosphere	MADDKKKVGQPDRNLISFKEKYEFDYAAKQLQKQVPDTTKQEARNALIKAARQVSPSEGREKVMRAARKILKD*
Ga0070680_1007598881	3300005336	Corn Rhizosphere	DRNLISFKEKYEFDYAVRQLQKQVSDTTKQEARNALTKAARQVSPSEGREKVMRAARKILKD*
Ga0070682_1006187712	3300005337	Corn Rhizosphere	MADNKQKRGTPDRNLISFREKYEFNYAVKQLQKQVSNTTRQEAKDALTAAAKKISPSEGREKIMRAARKKLRT*
Ga0070682_1010283462	3300005337	Corn Rhizosphere	MIRNKRGAPDRNLISFREKYEFEYALKQLQKQVPESSNHAAKEALTEAARKVSPSEGREKIMRALPAKS*
Ga0070700_1004801561	3300005441	Corn, Switchgrass And Miscanthus Rhizosphere	KYEFDYAVKQLQKQVPDTTKQEAKQALTEAAKKISPSEGREKIMRAARKKLRG*
Ga0070663_1002569201	3300005455	Corn Rhizosphere	MADDKKKVGQPDRNLISFEEKYEFDYAVRQLQKQVSDTTKQEARNALTKAARQVSPSEGREKVMRAARKILKD*
Ga0070681_100350252	3300005458	Corn Rhizosphere	MADDKKKVGQPDRNLISFKEKYEFDYAVRQLQKQVSDTTKQEARNALTKAARQVSPSEGREKVMRAARKILKD*
Ga0070699_1014768282	3300005518	Corn, Switchgrass And Miscanthus Rhizosphere	MSDNKKNIGKPDRNLISFKENYEVNYAVNQLKKQFPEETKQDTKDALFQAAKKVEPSEGREKIMREARKKLRD*
Ga0068853_1000145464	3300005539	Corn Rhizosphere	MDTPMPDDKRNIGKPDRNLISFKEKYEFNYALKQLQKQFPDETKQEVKDALTSAAKKVAPSEGREKIMQQARKNLRE*
Ga0070686_1010043951	3300005544	Switchgrass Rhizosphere	MTDNKKKTGKPDSYLISFKQKYEFDYAAKQLQKQVKGTTRQEAKDALTAAAKKISPSEGREKIMRAARKKLRS*
Ga0075367_101538251	3300006178	Populus Endosphere	MSDNKQNRGNPDRNLISFKQKYEFDYAVKQLQKQVPDTTRQEAKDALTKAARKISPSEGREKIMRAALKDLR
Ga0075370_109323832	3300006353	Populus Endosphere	SDNKQNRGNPDRNLISFKQKYEFDYAVKQLQKQVPDTTRQEAKDALTKAARKISPSEGREKIMRAALKDLRD*
Ga0069787_1011700016	3300006417	Enhanced Biological Phosphorus Removal Bioreactor	MADDKTKVGRQDDNLISFKQKYEVDYAVNQLKKAFPDESRKDVKEALFKAARENSPSEGREKIMRAARKNLRG*
Ga0075431_1013064332	3300006847	Populus Rhizosphere	MADDKKNVGSPDRNLISFKEKYEFDYAAKQLQKQVPDITRQEAKEALTRAARQVSPSEGREKVMRAARKILKS*
Ga0075434_1002703753	3300006871	Populus Rhizosphere	MVDNKKKTGKPDSYLISFKEKYEFNYAVKQLQKQVAGTTRQEAKDALTTAAKKISPSEGREKIMRRARKILRD*
Ga0104751_12207761	3300007351	Deep Subsurface Aquifer	MADNKKNTGKPDSYLISFKQKYEFNYAVKQLQNQVSDTTRQEAKEALTKAATKVSPSEGREKVMRAARKIL
Ga0115930_100032739	3300008886	Micrasterias Crux-Melitensis (Mzch 98) Associated	MADDKSKRGKPDSYLISFKEKYEFEYAAKQLQKQVAGTTRQEARDALTVAAKKISPSEGREKIMRAARKNLRD*
Ga0103682_100184441	3300009031	Groundwater	MADNKNKIQEDKNLISFKQKYEVDYAIKQLKKQFPNETKIDVKEALFDAAKQVKPSEGREKIMRIARKELRD*
Ga0105240_104208492	3300009093	Corn Rhizosphere	MDTPMPDDKRNIGKPDRNLISFKEKYEFNYALKQLQKQIPDETKQEVKDALTSAAKKVAPSEGREKIMQQARKNLRE*
Ga0105247_113636171	3300009101	Switchgrass Rhizosphere	GRPDSYLISFKQKYEFNYAVKQLQKQVEGTTRQQAKDALTAAAKKISPSEGREKIMRAARKRLRS*
Ga0111538_118223302	3300009156	Populus Rhizosphere	LISFKEKYEFDYAAKQLQKQVPDTTRQEAKDALTAVAKKVSPSEGREKIMRAARKILRD*
Ga0116171_103708912	3300009692	Anaerobic Digestor Sludge	MKVKKDMADDKIKKKEDANLISFKENYEVNYAVNQLKKEFPDESKQDIKDALFDAAKKVKPGEGREKIMQLARKNLK*
Ga0126311_1000274712	3300010045	Serpentine Soil	MRMTDNKKKTGKPDSYLISFKQKYEFNYAVKQLQKQVEGTTRQQAKDALTTAAKKISPSEGREKIMRAARKRLRS*
Ga0116237_100909066	3300010356	Anaerobic Digestor Sludge	MVDDKNKIKEDKNLISFKEKWEFDYAVNQLQKQVPDTTKQEAKDALIAAAKKISPSEGRDKIMRQARKNLKD*
Ga0134125_106206282	3300010371	Terrestrial Soil	MADNKQKRGTPDRNLISFREKYEFNYAVKQLQKQVSNTTRQEAKDALTAAAKKISPSEGREKILRAARKKLRT*
Ga0134128_1000281315	3300010373	Terrestrial Soil	MADDKKNVGQPDRNLISFKEKYEFDYAAKQLQKQVADTTKQEARDALTKAARQVSPSEGREKVMRAARKILKD*
Ga0134124_113138292	3300010397	Terrestrial Soil	MADNKKNIGKPDRNLINFKENYEVYYAVNQLKKQFPDETKTDIKEALFDAAKKVAPSEGREKVMKIARKILQD*
Ga0134124_118228442	3300010397	Terrestrial Soil	MGDNKQKRGNPDRYLISFKEKYEFDYAAKQLQKQVPETTRQEARDALSAVAKKISPSEGREKIMRAARKRLRD*
Ga0134124_125906521	3300010397	Terrestrial Soil	MGDDKKKTGTPDRNLISFKEKYEFDYAVKQLQKQVPDTTKQEAKQALTEAAKKISPSEGREKIMRAARKKLRS*
Ga0137363_100433871	3300012202	Vadose Zone Soil	MAMSDNKKNIGKPDRNLISFKENYEVDYAVKQLQKQVPDTTKQEAKDALFAAAKKVAPSEGREKIMRLARKALQA*
Ga0137363_103857052	3300012202	Vadose Zone Soil	MTDNKKNIGNPDRYLISFKEKYEVNYAVTQLQKQVPGTTRPEAKEALFEAAKQIDPSRGREKIMAAARKDLRS*
Ga0137362_108031211	3300012205	Vadose Zone Soil	MGDNKKNTGKPDRNLISFKEKYEFNYAVKQLQKQVPDTTRQEAKDALSAAARRISPSEGREKIMRAARKILK*
Ga0150985_1068457171	3300012212	Avena Fatua Rhizosphere	KTKRGAPDRNLINFKEKYEFDYAVKQLQNQVPDTTKQEAKEALTEAARKISPSEGREKIMREARKTLKD*
Ga0150985_1195472223	3300012212	Avena Fatua Rhizosphere	MGDDKTKRGTPDRNLISFKENYEFDYAVRQLQNQVPDTTKQQAKEALTEAARKTSPSEGREKIMRVARKILKE*
Ga0150984_1038304291	3300012469	Avena Fatua Rhizosphere	DKTKRGSPDRNLINFKEKYEFNYAVRQLQNQVPDTTKQDAKQALTEAAKKISPSEGREKIMREARKILKD*
Ga0150984_1090322881	3300012469	Avena Fatua Rhizosphere	PDRNLINFKEKYEFDYAVKQLQNQVPETTKQAAREALTDAARKISPSEGREKIMREARKILKD*
Ga0150984_1153257411	3300012469	Avena Fatua Rhizosphere	DKTKRGTPDRNLISFKENYEFDYAVRQLQNQVPDTTKQQAKEALTEAARKTSPSEGREKIMRVARKILKE*
Ga0137397_102003573	3300012685	Vadose Zone Soil	MADDKTKRGKEDRNLISFKEKYEVDYAVNQLKKEFPDETKTDIKESLFDAAKQVSPSEGREKIMRLARKDLND*
Ga0164241_1000002719	3300012943	Soil	MADDKKNVGHPDRNLISFKQRYEFDYAAKQLQKQVADTTRQEARDALTEAARLVSPSEGREKVMRAARKILKD*
Ga0164241_1000428014	3300012943	Soil	MADDKTKVGQPDRNLISFKEKYEFDYAAKQLQKQVPDTTRQEARDALTEAARRVSPSEGREKVMRAARKVLKS*
Ga0164241_104415922	3300012943	Soil	MSDDKTKRGTPDRNLINFKEKYEFSYAVKQLQKQVPETTKQHAKDALVEAARKISPSEGREKIMRAARKILND*
Ga0164304_106197891	3300012986	Soil	MADDKKKQKEDRNLISFKEKYEVDYAVNQLKKQFPDQTKTDVKEALFDAAKKVAPSEGREKIMRLARKTLKD*
(restricted) Ga0172374_10558743	3300013122	Freshwater	QVAIIHRVKGCNYYLILIKMADNKNKTKEDRNLISFKQNYEVYYAVNQLKKQFPDETKIEIKEILFDAARKVSPSEGREKIMRLARKELKN*
(restricted) Ga0172368_100215204	3300013123	Freshwater	VAIIHRVKGCNYYLILIKMADNKNKTKEDRNLISFKQNYEVYYAVNQLKKQFPDETKIEIKEILFDAARKVSPSEGREKIMRLARKELKN*
Ga0157378_121005902	3300013297	Miscanthus Rhizosphere	MADNKKKTGKPDSYLISFKEKYEFDYAANQLQKQVPDTTKQEAKNALTEAAKKVSPSEGREKVMRAARKILRS*
Ga0120158_102859812	3300013772	Permafrost	MADDKKNIGKPDRNLISFKEKYEFNYAVNQLQKQIPDTTKQESKDALNKAAKQISPSEGREKIMRAARKNLRS*
Ga0119868_10179271	3300014059	Activated Sludge	RNLISFKQKYEFDYAVKQLQKQVPDTTKQEAKEALTKAAKKISPSEGRAKIMRVAKKDLRS*
Ga0172379_1001180212	3300014208	Groundwater	MADNKKNIGKPDRNLISFKENYEVYYAVNQLQKQIPGTTKREAKDALFKAAKKTSPSEGREKIMRIARKDLRN*
Ga0172379_106347032	3300014208	Groundwater	MDIMADDKNKIKEDRNLISFKENYEVYYAVNQLKKQFPDETKQAIKEALFEAAKQVKPSEGREKIMRIVRKDLRD*
Ga0182030_102257942	3300014838	Bog	MSDNKKKTGKPDSYLISFKEKYEVDYAVKQLQKQFPDEKKQVVKAALIKAATEVKPSDGREKIMKQARKDLKS*
Ga0157379_111371962	3300014968	Switchgrass Rhizosphere	MTDNKKKTGKPDSYLISFKEKYEVDYAVKQLQKEFPNEAKQKVKDALIEAAKQIDPSDGREKIMRQARKDLKD*
Ga0182742_10023968	3300017651	Compost	MADDKKKTGNPDRNLIAFNQKYEFNYAVRQLQKQIPDTTRQEAKEALTKAARQVSPSEGREKVMRAARKILKD
Ga0190272_110273622	3300018429	Soil	MADNKKKIGVPDRNLISFKEKYEFDYAVKQVQKKAPDGTTKQEAKDALTAAAKKISPSEGRKKIMREALKRLKD
Ga0190271_106164102	3300018481	Soil	MADDKKNVGQPDRNLISFKQKYEFNYAAAQLQKQVPDTTRQEAKDALTKAARQVTPSEGREKVMRAARKFLKD
Ga0187894_100696012	3300019360	Microbial Mat On Rocks	MSDDKSKVGKPDRYLISFKQKYEFDYAVNQLRKKFPEENQTAVKKALTEAAKKVSPSEGREKVMREARRKLRD
Ga0197853_104151345	3300019775	Enriched Sediment	MADDKKKVGRQDDNLIAFKQRYEFDYAAKQLQKQVVGATRQEAKEALTKAAKKVSPSEGREKVMREARKILRD
Ga0193752_10067687	3300020027	Soil	MSDDKRNIGKPDRNLISFNQKYEFDYAVGQLQKQFPSETKQEVKDALTEAARRVSPSEGREKIMRAARKNLRD
Ga0163152_102094852	3300020213	Freshwater Microbial Mat	MADDKKNIGKPDRNLISFKEKYEVNYAVNQLQKQIPDTTKQEAKDALFKAAKQISPSEGREKIMRAARKDLRS
Ga0196963_101879642	3300020215	Soil	MTDNKKKIGKPDRNLISFKENWEFSYAIRQLLVKNPRATKESVKDALTKAARKVEPSEG
Ga0211553_100267862	3300020415	Marine	MADNKSKRGKPDSYLISFKERYEVDYAVKQLQKQFSTKTKTEVKKALTKAASEIDPSRGRERIMNGARKILKK
Ga0211544_101894622	3300020443	Marine	MADNKSKRGKPDSYLISFKERYEVDYAVKQLQKQFPAKTKTEVKKALTKAANEIDPSRGRERIMKGARKLIKK
Ga0180223_10014289	3300020591	Compost	MADDKQNRGSPDRNLISFKQRYEFNYAVKQLQKQVSDTTRQEAKDALTAAAKANSPSEGREKIMRAARKILRD
Ga0194044_100011619	3300021074	Anoxic Zone Freshwater	MADNKNMVKEDRNLISFKENYEVYYAVNQLKKQFPDETKADIKEVLFGAAKQVSPSEGREKIMRLTRKELNS
Ga0193706_10133532	3300021339	Soil	MADDKKNVGQPDRNLISFKEKYEFDYAARQLQKQFPGETKQDVKEALTDAAKKVSPSEGREKIMRQARKNLRD
Ga0193699_104638021	3300021363	Soil	MADDKKNVGQPDRNLISFKEKYEFDYAVRQLKTQFPDETKQDVKEALTEAAKKVSPSEGREKIMRQARKN
Ga0210397_113575122	3300021403	Soil	REYLCYNIFYMSDNKKNTGKPDSYLISFKEKYEVNYAVNQLQKEFPNEKKQVVKDALFEAAKKVNPSDGRENIMRQARKNLKN
Ga0194054_102510312	3300021605	Anoxic Zone Freshwater	MSDNKNKVGWQDDNLISFKQDYEVNYAVKQLQKQFPEETKNEVKKALFDAAKKISPSEGREKIMKLARKNLRN
Ga0212091_104691121	3300022549	Groundwater	MADDKKKTGAPDRNLISFKQKYEFDYAVGQLRKQFPNEPRQEVKDALTAAATRISPSEGREKIMREARKRLKD
Ga0136601_100083611	3300023049	Saline Lake	MSDNKKNTGNPDRYLISFKEKYEVEYAIKQLQKKFPDKTRDKITKALNDAAKEVDPSRGREKIMIKARKNLR
Ga0247784_100004733	3300023270	Plant Litter	MADDKTKTGKEDDNLISFKQKYEVDYAVKQLQKQVPDTTRREAKDALFEAAKKTSPSEGREKVMRAARKILKD
Ga0179591_11465598	3300024347	Vadose Zone Soil	MADDKKNIGKPDRNLISFKEKYEFDYAVKQLQNQVSDTTRQEAKDALTAAAKKISPSEGREKIMRAARKQLRD
Ga0209210_10302231	3300025015	Contaminated Groundwater	MADDKKKVKEDRNLISFKEHYEVYYAVNQLKKQFPDETKADIKDALFDAAKQVKPSEGREKIMRLARKDLRD
Ga0209541_101009813	3300025317	Groundwater	MADDKNKVKEDRNLISFKENYEVYYAVNQLKKQFPDETKSDIKEALFDAAKQVSPSEGREKIMRLTRKELNS
Ga0209542_105436101	3300025323	Soil	MADDKNKKKEDANLISFKENYEVYYAVNQLKKEFPDETKADIKEALFDAAKQVKPSEGREKIMRLVRKDLKD
Ga0207952_10449672	3300025536	Serpentinite Rock And Fluid	MADDKKKVKEDRNLISFKENYEVNYAVNQLKKQFPDETKVDIKEALFDAAKQVSPSEGREKIMRLARKDLRD
Ga0207707_100048986	3300025912	Corn Rhizosphere	MADDKKKVGQPDRNLISFKEKYEFDYAVRQLQKQVSDTTKQEARNALTKAARQVSPSEGREKVMRAARKILKD
Ga0207639_100087255	3300026041	Corn Rhizosphere	MDTPMPDDKRNIGKPDRNLISFKEKYEFNYALKQLQKQFPDETKQEVKDALTSAAKKVAPSEGREKIMQQARKNLRE
Ga0209726_1000028912	3300027815	Groundwater	MADNKNKTGKPDIYLISFKEAYEVNYAVKQLQKQFPEKTKQVVKEALFEAAKIVDPSEGREKVMKQARKNLRD
Ga0209726_102770032	3300027815	Groundwater	MADDKKKIGVPDRNLISFKERYEFDYAVKQLQKQVPEATRQAAKEALTDAAKKVSPSEGREKIMRQARKNLRD
Ga0209514_1000862811	3300027819	Groundwater	MADDKTKRGVPDRNLISFKEKYEFDYAVKQLQNQVADTTRQEAKDALTAAAKKISPSEGREKIMREAKKNLRD
Ga0209514_100294605	3300027819	Groundwater	MSDDKKKVKEDRNLISFKENYEVDYAVNQLKKQFPDETKKEIKEALFDAAKQVSPSEGREKIMRIARKDLKD
Ga0209514_100472404	3300027819	Groundwater	MADNKKKIKEDANLISFKENYEVYYAVNQLKKQFPDETKADIKDALFDAAKQVKPSEGREKIMRLARKELND
Ga0209515_100217677	3300027835	Groundwater	MADNKNKVKEDRNLISFKENYEVYYAVNQLKKQFTDETKADIKEALFDAAKQVSPSEGREKIMRLARKELNN
Ga0209515_100433317	3300027835	Groundwater	MTDNKKKTGKPDSYLISFKERYEFDYAVGQLQKQVSDTTKQEAKDALTKAAKKVNPSEGREKIMRAARKILNS
Ga0209515_101623762	3300027835	Groundwater	MLTSMADDKKNIGKPDRNLISFKEKWEFDYAIRQLHVQDPDGTKQQAKNALTKAAKRIEPSEGRKRIMKEALKILKDN
Ga0209382_110670473	3300027909	Populus Rhizosphere	MADDKKNVGSPDRNLISFKEKYEFDYAAKQLQKQVPDITRQEAKEALTRAARQVSPSEGREKVMRAARKILKN
Ga0265292_100025274	3300028028	Landfill Leachate	MADDKTKIGKRDRNLISFKQKYEVAYAVNQLKKQFPDETKQDIKDVLFEAAKKISPSEGRDKIMRLARKNLQN
Ga0302292_11803132	3300028738	Fen	MSDNKNKIGRQDRNLISFKEKYEVDYAVRQLQKQFPDEAKQDVKKALIKAAIAVNPSEGREKIMRQARKNLK
Ga0265297_102531772	3300029288	Landfill Leachate	MSDNKKNIGKPDRNLISFKERYEFDYAVKQLQKKFPDETKQEVKDALTKAAKKVEPSEGREKIMREARKNLR
Ga0311365_107057671	3300029989	Fen	MADDKKNVGQPDRSLISFKEKYEFNYAAKQLQKQVPDTNKQEARDALTKAARQVSPSEGREKVMRAARKILRD
Ga0311364_106319171	3300031521	Fen	MADNKKNIGKPDRNLISFKEKYEFDYAVKQLQKQVSNTTKQEAKDALVAAAKAVSPSEGREKIMRAALKKLKN
Ga0307468_1000109382	3300031740	Hardwood Forest Soil	MADDKKNVGPADRHLISFKQKYEFDYAARQLQKQVPDATRQEARNALARAARQESPSEGRERIMRAARKILRA
Ga0214473_114841101	3300031949	Soil	ISFRQKYEFDYAVRQLQKQFQDTTRQEAKDALTEAARRISPSEGREKIMRAARKTLRN
Ga0315910_1000394111	3300032144	Soil	MADDKKKIGREDANVISFKQKYEVDYAVNQLQKAFPNETKKDVKEALFEAARKISPSEGREKIMRAARKNLRD
Ga0315912_112956261	3300032157	Soil	MADNKNKTGSPDRNLISFKQKYEFDYAVKQVQNKGPEGTTKQEAKDALTAAARKISPSEGRDKIMRDALKRLK
Ga0315268_1000156324	3300032173	Sediment	MTDDKKNIGKPDRNLISFKEKYEVDYAVNQLQKQVPGTTKQEAREALFDAARKVSPSEGREKIMRAARKDLRD
Ga0335085_10000076296	3300032770	Soil	MTDNKKNRGNPDRYLISFKEKYEFRYAAKQVQKKAPQGTTLQKATAALTAAAKKISPSEGRKKIMRAALKILKK
Ga0335073_105729711	3300033134	Soil	MADDKKNRGNPDRYLISFKEKWEFAYAVKQLKKKAADATTQEAKDALTAAARKISPSEGRKKIMREALKKLKG
Ga0334722_1000101628	3300033233	Sediment	LATLFNHLTLRYDCYMTDDKKNIGKPDRNLISFKEKYEVDYAVNQLQKQVPGTTKQEAREALFDAARKVSPSEGREKIMRAARKDLRD
Ga0370498_032206_352_573	3300034155	Untreated Peat Soil	MADDKTKIGKPDRNLISFKERYEFDYAVWQLQKQFPDETKKDVKDALTAAARKVSPSEGREKIMRQARKSLRD

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters