Metagenome / Metatranscriptome Family F081936

Basic Information
Family ID	F081936
Family Type	Metagenome / Metatranscriptome
Number of Sequences	114
Average Sequence Length	80 residues
Representative Sequence	LLDRKLDAKKPSPPNVEASVNPKVEQLAHVLEITLIVVPDSADLLNFNFRFLIIYRLKFTKIATRTELIQVKINASIISLGT
Number of Associated Samples	103
Number of Associated Scaffolds	114

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Archaea
% of genes with valid RBS motifs	0.00 %
% of genes near scaffold ends (potentially truncated)	51.75 %
% of genes from short scaffolds (< 2000 bps)	85.96 %
Associated GOLD sequencing projects	97
AlphaFold2 3D model prediction	No

Most Common Taxonomy
Group	Archaea (85.965 % of family members)
NCBI Taxonomy ID	2157
Taxonomy	All Organisms → cellular organisms → Archaea

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (14.912 % of family members)
Environment Ontology (ENVO)	Unclassified (31.579 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (45.614 % of family members)

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 29.27% β-sheet: 30.49% Coil/Unstructured: 40.24%
Feature Viewer

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Pfam ID	Name	% Frequency in 114 Family Scaffolds
PF07681	DoxX	3.51
PF01243	Putative_PNPOx	3.51
PF01596	Methyltransf_3	1.75
PF00582	Usp	0.88
PF00096	zf-C2H2	0.88
PF13462	Thioredoxin_4	0.88

COG ID	Name	Functional Category	% Frequency in 114 Family Scaffolds
COG2259	Uncharacterized membrane protein YphA, DoxX/SURF4 family	Function unknown [S]	3.51
COG4270	Uncharacterized membrane protein	Function unknown [S]	3.51
COG2518	Protein-L-isoaspartate O-methyltransferase	Posttranslational modification, protein turnover, chaperones [O]	1.75
COG4122	tRNA 5-hydroxyU34 O-methylase TrmR/YrrM	Translation, ribosomal structure and biogenesis [J]	1.75
COG4123	tRNA1(Val) A37 N6-methylase TrmN6	Translation, ribosomal structure and biogenesis [J]	1.75

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	85.96 %
Unclassified	root	N/A	14.04 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	85.96 %
Unclassified	root	N/A	14.04 %

Name	Rank	Taxonomy	Distribution
Archaea	superkingdom	All Organisms → cellular organisms → Archaea	85.96 %
Unclassified	root	N/A	14.04 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	14.04 %
TACK group	clade	All Organisms → cellular organisms → Archaea → TACK group	1.75 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	14.04 %
Thaumarchaeota	phylum	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota	1.75 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	14.04 %
Nitrososphaeria	class	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria	1.75 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	14.04 %
Nitrososphaerales	order	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales	1.75 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	14.04 %
Nitrososphaeraceae	family	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae	1.75 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	14.04 %
Nitrososphaera	genus	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae → Nitrososphaera	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	14.04 %
Candidatus Nitrososphaera evergladensis	species	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae → Nitrososphaera → Candidatus Nitrososphaera evergladensis	0.88 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2088090015\|GPICI_9079131	All Organisms → cellular organisms → Archaea	1147	Open in IMG/M
2140918002\|contig05051	All Organisms → cellular organisms → Archaea	2706	Open in IMG/M
2162886007\|SwRhRL2b_contig_1108932	All Organisms → cellular organisms → Archaea	1910	Open in IMG/M
2162886007\|SwRhRL2b_contig_2635989	All Organisms → cellular organisms → Archaea	800	Open in IMG/M
3300000550\|F24TB_15096836	All Organisms → cellular organisms → Archaea	576	Open in IMG/M
3300000953\|JGI11615J12901_10020558	Not Available	591	Open in IMG/M
3300003349\|JGI26129J50193_1000104	All Organisms → cellular organisms → Archaea	5102	Open in IMG/M
3300003379\|JGI26142J50222_100183	All Organisms → cellular organisms → Archaea	2488	Open in IMG/M
3300003382\|JGI26139J50223_100148	All Organisms → cellular organisms → Archaea	3529	Open in IMG/M
3300003392\|JGI26134J50242_100112	All Organisms → cellular organisms → Archaea	4519	Open in IMG/M
3300003396\|JGI26137J50245_100031	All Organisms → cellular organisms → Archaea	7517	Open in IMG/M
3300003503\|JGI26141J51220_1012920	All Organisms → cellular organisms → Archaea	559	Open in IMG/M
3300003996\|Ga0055467_10099351	All Organisms → cellular organisms → Archaea	826	Open in IMG/M
3300004157\|Ga0062590_102476229	All Organisms → cellular organisms → Archaea	549	Open in IMG/M
3300004643\|Ga0062591_101993390	All Organisms → cellular organisms → Archaea	598	Open in IMG/M
3300005093\|Ga0062594_101887014	All Organisms → cellular organisms → Archaea	633	Open in IMG/M
3300005269\|Ga0065706_1000376	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae → Nitrososphaera → Candidatus Nitrososphaera evergladensis	2925	Open in IMG/M
3300005289\|Ga0065704_10032771	All Organisms → cellular organisms → Archaea	745	Open in IMG/M
3300005289\|Ga0065704_10378357	All Organisms → cellular organisms → Archaea	776	Open in IMG/M
3300005295\|Ga0065707_10878006	All Organisms → cellular organisms → Archaea	573	Open in IMG/M
3300005334\|Ga0068869_101075583	All Organisms → cellular organisms → Archaea	703	Open in IMG/M
3300005336\|Ga0070680_101757012	Not Available	538	Open in IMG/M
3300005343\|Ga0070687_100638908	All Organisms → cellular organisms → Archaea	736	Open in IMG/M
3300005345\|Ga0070692_10073175	All Organisms → cellular organisms → Archaea	1830	Open in IMG/M
3300005353\|Ga0070669_101643825	Not Available	559	Open in IMG/M
3300005367\|Ga0070667_101524240	Not Available	628	Open in IMG/M
3300005441\|Ga0070700_100590642	All Organisms → cellular organisms → Archaea	868	Open in IMG/M
3300005458\|Ga0070681_11378154	All Organisms → cellular organisms → Archaea	629	Open in IMG/M
3300005530\|Ga0070679_100968341	All Organisms → cellular organisms → Archaea	794	Open in IMG/M
3300005549\|Ga0070704_101922704	All Organisms → cellular organisms → Archaea	548	Open in IMG/M
3300005615\|Ga0070702_100537515	Not Available	865	Open in IMG/M
3300006969\|Ga0075419_10185958	All Organisms → cellular organisms → Archaea	1371	Open in IMG/M
3300006969\|Ga0075419_10443253	All Organisms → cellular organisms → Archaea	895	Open in IMG/M
3300009093\|Ga0105240_10669381	All Organisms → cellular organisms → Archaea	1136	Open in IMG/M
3300009147\|Ga0114129_10555405	All Organisms → cellular organisms → Archaea	1493	Open in IMG/M
3300009147\|Ga0114129_10555532	All Organisms → cellular organisms → Archaea	1492	Open in IMG/M
3300009147\|Ga0114129_12641090	All Organisms → cellular organisms → Archaea	599	Open in IMG/M
3300009156\|Ga0111538_13500304	All Organisms → cellular organisms → Archaea	545	Open in IMG/M
3300009176\|Ga0105242_10053940	All Organisms → cellular organisms → Archaea	3284	Open in IMG/M
3300009176\|Ga0105242_10247620	All Organisms → cellular organisms → Archaea	1604	Open in IMG/M
3300009553\|Ga0105249_11387403	All Organisms → cellular organisms → Archaea	774	Open in IMG/M
3300010323\|Ga0134086_10074292	All Organisms → cellular organisms → Archaea	1178	Open in IMG/M
3300010329\|Ga0134111_10083236	All Organisms → cellular organisms → Archaea	1208	Open in IMG/M
3300010396\|Ga0134126_11380346	All Organisms → cellular organisms → Archaea	779	Open in IMG/M
3300010397\|Ga0134124_10404104	Not Available	1300	Open in IMG/M
3300010399\|Ga0134127_10092529	All Organisms → cellular organisms → Archaea	2627	Open in IMG/M
3300010400\|Ga0134122_10326593	All Organisms → cellular organisms → Archaea	1327	Open in IMG/M
3300010403\|Ga0134123_11453751	All Organisms → cellular organisms → Archaea	728	Open in IMG/M
3300012204\|Ga0137374_10030395	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae	5916	Open in IMG/M
3300012895\|Ga0157309_10050475	All Organisms → cellular organisms → Archaea	1030	Open in IMG/M
3300012898\|Ga0157293_10031094	All Organisms → cellular organisms → Archaea	1075	Open in IMG/M
3300012900\|Ga0157292_10005111	All Organisms → cellular organisms → Archaea	2655	Open in IMG/M
3300012904\|Ga0157282_10022423	All Organisms → cellular organisms → Archaea	1319	Open in IMG/M
3300012908\|Ga0157286_10004626	All Organisms → cellular organisms → Archaea	2397	Open in IMG/M
3300012909\|Ga0157290_10127048	Not Available	788	Open in IMG/M
3300012910\|Ga0157308_10049241	Not Available	1088	Open in IMG/M
3300012913\|Ga0157298_10184751	All Organisms → cellular organisms → Archaea	655	Open in IMG/M
3300013096\|Ga0157307_1087824	All Organisms → cellular organisms → Archaea	642	Open in IMG/M
3300015372\|Ga0132256_103796832	All Organisms → cellular organisms → Archaea	508	Open in IMG/M
3300017654\|Ga0134069_1167967	All Organisms → cellular organisms → Archaea	739	Open in IMG/M
3300017656\|Ga0134112_10172038	All Organisms → cellular organisms → Archaea	839	Open in IMG/M
3300017997\|Ga0184610_1060966	All Organisms → cellular organisms → Archaea	1135	Open in IMG/M
3300018028\|Ga0184608_10092871	All Organisms → cellular organisms → Archaea	1251	Open in IMG/M
3300018054\|Ga0184621_10141935	All Organisms → cellular organisms → Archaea	864	Open in IMG/M
3300018067\|Ga0184611_1249676	All Organisms → cellular organisms → Archaea	627	Open in IMG/M
3300018076\|Ga0184609_10431673	Not Available	608	Open in IMG/M
3300018465\|Ga0190269_11905118	Not Available	513	Open in IMG/M
3300019873\|Ga0193700_1001394	All Organisms → cellular organisms → Archaea	3306	Open in IMG/M
3300020005\|Ga0193697_1060919	All Organisms → cellular organisms → Archaea	933	Open in IMG/M
3300020016\|Ga0193696_1035793	All Organisms → cellular organisms → Archaea	1325	Open in IMG/M
3300021078\|Ga0210381_10357350	Not Available	534	Open in IMG/M
3300022756\|Ga0222622_10042975	All Organisms → cellular organisms → Archaea	2502	Open in IMG/M
3300022756\|Ga0222622_11326774	Not Available	529	Open in IMG/M
3300022892\|Ga0247753_1027440	All Organisms → cellular organisms → Archaea	664	Open in IMG/M
3300023071\|Ga0247752_1030212	All Organisms → cellular organisms → Archaea	800	Open in IMG/M
3300023077\|Ga0247802_1062729	All Organisms → cellular organisms → Archaea	604	Open in IMG/M
3300025795\|Ga0210114_1050118	All Organisms → cellular organisms → Archaea	861	Open in IMG/M
3300025796\|Ga0210113_1085091	All Organisms → cellular organisms → Archaea	629	Open in IMG/M
3300025901\|Ga0207688_10670908	All Organisms → cellular organisms → Archaea	655	Open in IMG/M
3300025908\|Ga0207643_10379111	All Organisms → cellular organisms → Archaea	891	Open in IMG/M
3300025917\|Ga0207660_11522547	Not Available	540	Open in IMG/M
3300025921\|Ga0207652_10705258	All Organisms → cellular organisms → Archaea	900	Open in IMG/M
3300025925\|Ga0207650_10178697	All Organisms → cellular organisms → Archaea	1690	Open in IMG/M
3300025937\|Ga0207669_11836867	All Organisms → cellular organisms → Archaea	518	Open in IMG/M
3300025942\|Ga0207689_11420679	All Organisms → cellular organisms → Archaea	581	Open in IMG/M
3300025945\|Ga0207679_10196894	All Organisms → cellular organisms → Archaea	1680	Open in IMG/M
3300026095\|Ga0207676_10009797	All Organisms → cellular organisms → Archaea	6814	Open in IMG/M
3300026720\|Ga0207440_103154	All Organisms → cellular organisms → Archaea	509	Open in IMG/M
3300026726\|Ga0207614_101713	All Organisms → cellular organisms → Archaea	531	Open in IMG/M
3300026731\|Ga0207523_100762	All Organisms → cellular organisms → Archaea	753	Open in IMG/M
3300026861\|Ga0207503_1014105	All Organisms → cellular organisms → Archaea	518	Open in IMG/M
3300027252\|Ga0209973_1009229	All Organisms → cellular organisms → Archaea	1143	Open in IMG/M
3300027360\|Ga0209969_1018729	All Organisms → cellular organisms → Archaea	1024	Open in IMG/M
3300027360\|Ga0209969_1027710	All Organisms → cellular organisms → Archaea	859	Open in IMG/M
3300027395\|Ga0209996_1032248	All Organisms → cellular organisms → Archaea	764	Open in IMG/M
3300027436\|Ga0207493_101944	All Organisms → cellular organisms → Archaea	502	Open in IMG/M
3300027992\|Ga0247750_1026074	All Organisms → cellular organisms → Archaea	612	Open in IMG/M
3300028380\|Ga0268265_10852758	Not Available	891	Open in IMG/M
3300028380\|Ga0268265_10854735	All Organisms → cellular organisms → Archaea	890	Open in IMG/M
3300028705\|Ga0307276_10206572	Not Available	518	Open in IMG/M
3300028793\|Ga0307299_10126740	All Organisms → cellular organisms → Archaea	959	Open in IMG/M
3300028811\|Ga0307292_10412369	All Organisms → cellular organisms → Archaea	575	Open in IMG/M
3300031091\|Ga0308201_10080342	All Organisms → cellular organisms → Archaea	897	Open in IMG/M
3300031538\|Ga0310888_10440816	All Organisms → cellular organisms → Archaea	770	Open in IMG/M
3300031847\|Ga0310907_10621746	All Organisms → cellular organisms → Archaea	590	Open in IMG/M
3300031892\|Ga0310893_10202859	All Organisms → cellular organisms → Archaea	800	Open in IMG/M
3300031913\|Ga0310891_10050939	All Organisms → cellular organisms → Archaea	1160	Open in IMG/M
3300031913\|Ga0310891_10058683	All Organisms → cellular organisms → Archaea	1097	Open in IMG/M
3300031913\|Ga0310891_10099825	Not Available	890	Open in IMG/M
3300031940\|Ga0310901_10011615	All Organisms → cellular organisms → Archaea	2371	Open in IMG/M
3300031943\|Ga0310885_10340146	All Organisms → cellular organisms → Archaea	785	Open in IMG/M
3300032000\|Ga0310903_10072583	All Organisms → cellular organisms → Archaea	1392	Open in IMG/M
3300032013\|Ga0310906_10376133	All Organisms → cellular organisms → Archaea	931	Open in IMG/M
3300032179\|Ga0310889_10069043	All Organisms → cellular organisms → Archaea	1433	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	67.54%
Host-Associated	Host-Associated	32.46%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	57.89%
Plants	Host-Associated → Plants	32.46%
Aquatic	Environmental → Aquatic	9.65%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	57.89%
Rhizoplane	Host-Associated → Plants → Rhizoplane	18.42%
Rhizosphere	Host-Associated → Plants → Rhizosphere	14.04%
Sediment	Environmental → Aquatic → Sediment	6.14%
Marine	Environmental → Aquatic → Marine	2.63%
Freshwater	Environmental → Aquatic → Freshwater	0.88%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	47.37%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	14.91%
Loam	Environmental → Terrestrial → Soil → Loam	10.53%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	8.77%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	6.14%
Soil	Host-Associated → Plants → Rhizosphere → Soil	5.26%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	3.51%
Wetlands	Environmental → Aquatic → Marine → Wetlands	2.63%
Sediment	Environmental → Aquatic → Freshwater → Sediment	0.88%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	25.44%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	14.91%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	10.53%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	9.65%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	8.77%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	8.77%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	6.14%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	5.26%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	3.51%
Unclassified	Environmental → Aquatic → Marine → Wetlands → Unclassified	2.63%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	1.75%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	0.88%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.88%
Unclassified	Environmental → Terrestrial → Soil → Loam → Unclassified	0.88%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	14.91%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	9.65%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	8.77%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	7.02%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	5.26%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	4.39%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	4.39%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	4.39%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	3.51%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	3.51%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	3.51%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Switchgrass Rhizosphere	3.51%
Natural And Restored Wetlands	Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands	2.63%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	2.63%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	2.63%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	2.63%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	1.75%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Switchgrass Rhizosphere	1.75%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	1.75%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	1.75%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	0.88%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	0.88%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.88%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	0.88%
Rhizosphere And Bulk Soil	Environmental → Terrestrial → Soil → Loam → Unclassified → Rhizosphere And Bulk Soil	0.88%
Corn, Switchgrass And Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	0.88%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.88%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.88%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	0.88%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	0.88%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	0.88%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2088090015	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
2140918002	Rhizosphere and bulk soil microbial communities from the Great Lakes - Sample MSB1	Environmental	Open in IMG/M
2162886007	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2	Host-Associated	Open in IMG/M
3300000550	Amended soil microbial communities from Kansas Great Prairies, USA - BrdU amended with acetate total DNA F2.4 TB clc assemly	Environmental	Open in IMG/M
3300000953	Soil microbial communities from Great Prairies - Kansas Corn soil	Environmental	Open in IMG/M
3300003349	Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Endophyte Co-N S PM	Host-Associated	Open in IMG/M
3300003379	Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant Co S PM	Host-Associated	Open in IMG/M
3300003382	Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M1 S AM	Host-Associated	Open in IMG/M
3300003392	Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant Co PM	Host-Associated	Open in IMG/M
3300003396	Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M3 PM	Host-Associated	Open in IMG/M
3300003503	Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M3 S AM	Host-Associated	Open in IMG/M
3300003996	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNW_CattailB_D2	Environmental	Open in IMG/M
3300004157	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - - Combined assembly of AARS Block 2	Environmental	Open in IMG/M
3300004643	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 3	Environmental	Open in IMG/M
3300005093	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of KBS All Blocks	Environmental	Open in IMG/M
3300005269	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL3 Bulk Soil	Environmental	Open in IMG/M
3300005289	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2	Host-Associated	Open in IMG/M
3300005295	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL3	Environmental	Open in IMG/M
3300005334	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2	Host-Associated	Open in IMG/M
3300005336	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG	Environmental	Open in IMG/M
3300005343	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG	Environmental	Open in IMG/M
3300005345	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-2 metaG	Environmental	Open in IMG/M
3300005353	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG	Host-Associated	Open in IMG/M
3300005367	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG	Host-Associated	Open in IMG/M
3300005441	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG	Environmental	Open in IMG/M
3300005458	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG	Environmental	Open in IMG/M
3300005530	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG	Environmental	Open in IMG/M
3300005549	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG	Environmental	Open in IMG/M
3300005615	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-3 metaG	Environmental	Open in IMG/M
3300006969	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD3	Host-Associated	Open in IMG/M
3300009093	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG	Host-Associated	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300009156	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)	Host-Associated	Open in IMG/M
3300009176	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG	Host-Associated	Open in IMG/M
3300009553	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG	Host-Associated	Open in IMG/M
3300010323	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_40cm_2_24_1 metaG	Environmental	Open in IMG/M
3300010329	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_2_11112015	Environmental	Open in IMG/M
3300010396	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-2	Environmental	Open in IMG/M
3300010397	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-4	Environmental	Open in IMG/M
3300010399	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-3	Environmental	Open in IMG/M
3300010400	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-2	Environmental	Open in IMG/M
3300010403	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-3	Environmental	Open in IMG/M
3300012204	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_100_16 metaG	Environmental	Open in IMG/M
3300012895	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S208-509C-2	Environmental	Open in IMG/M
3300012898	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S194-509B-1	Environmental	Open in IMG/M
3300012900	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S179-409R-1	Environmental	Open in IMG/M
3300012904	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S029-104C-1	Environmental	Open in IMG/M
3300012908	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S089-202R-1	Environmental	Open in IMG/M
3300012909	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S149-409B-1	Environmental	Open in IMG/M
3300012910	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S198-509B-2	Environmental	Open in IMG/M
3300012913	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S043-104R-2	Environmental	Open in IMG/M
3300013096	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S178-409R-2	Environmental	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300017654	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_40cm_2_24_1 metaG	Environmental	Open in IMG/M
3300017656	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_11112015	Environmental	Open in IMG/M
3300017997	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_100_coex	Environmental	Open in IMG/M
3300018028	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_30_coex	Environmental	Open in IMG/M
3300018054	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_30_b1	Environmental	Open in IMG/M
3300018067	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_5_coex	Environmental	Open in IMG/M
3300018076	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_60_coex	Environmental	Open in IMG/M
3300018465	Populus adjacent soil microbial communities from riparian zone of Blue River, Arizona, USA - 249 IS	Environmental	Open in IMG/M
3300019873	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U3s1	Environmental	Open in IMG/M
3300020005	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L3m2	Environmental	Open in IMG/M
3300020016	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L3m1	Environmental	Open in IMG/M
3300021078	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_5_coex redo	Environmental	Open in IMG/M
3300022756	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_5_b1	Environmental	Open in IMG/M
3300022892	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S169-409R-5	Environmental	Open in IMG/M
3300023071	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S019-104C-5	Environmental	Open in IMG/M
3300023077	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S076-202R-6	Environmental	Open in IMG/M
3300025795	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNW_TuleA_D2 (SPAdes)	Environmental	Open in IMG/M
3300025796	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNW_CattailC_D2 (SPAdes)	Environmental	Open in IMG/M
3300025901	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4 (SPAdes)	Host-Associated	Open in IMG/M
3300025908	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025917	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes)	Environmental	Open in IMG/M
3300025921	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes)	Environmental	Open in IMG/M
3300025925	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025937	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025942	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025945	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026095	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026720	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G10A2w-12 (SPAdes)	Environmental	Open in IMG/M
3300026726	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G07A3-10 (SPAdes)	Environmental	Open in IMG/M
3300026731	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G05A4-10 (SPAdes)	Environmental	Open in IMG/M
3300026861	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G06A5a-12 (SPAdes)	Environmental	Open in IMG/M
3300027252	Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant Co S PM (SPAdes)	Host-Associated	Open in IMG/M
3300027360	Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M3 PM (SPAdes)	Host-Associated	Open in IMG/M
3300027395	Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M2 PM (SPAdes)	Host-Associated	Open in IMG/M
3300027436	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G05A3-11 (SPAdes)	Environmental	Open in IMG/M
3300027992	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S125-311R-5	Environmental	Open in IMG/M
3300028380	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300028705	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_115	Environmental	Open in IMG/M
3300028793	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_159	Environmental	Open in IMG/M
3300028811	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_149	Environmental	Open in IMG/M
3300031091	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_355 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031538	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D1	Environmental	Open in IMG/M
3300031847	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D4	Environmental	Open in IMG/M
3300031892	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C0D2	Environmental	Open in IMG/M
3300031913	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D4	Environmental	Open in IMG/M
3300031940	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C24D2	Environmental	Open in IMG/M
3300031943	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D2	Environmental	Open in IMG/M
3300032000	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C0D3	Environmental	Open in IMG/M
3300032013	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D3	Environmental	Open in IMG/M
3300032179	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D2	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
GPICI_01781610	2088090015	Soil	LPDRKLETTTAIPPNVEASMNPKVEQLAHALEITLIVVPATADLLILNFKSLIICKLKFTKTATRIELIQVKKNTPSISLGT
MSB1_00153000	2140918002	Rhizosphere And Bulk Soil	LPDRKLETTTANPPNVEASMNPKVEQLAHALEITLIVVPATADLLILNFKSLIICKLKFTKTATRIELIQVKKNTPSISLGT
SwRhRL2b_0932.00003520	2162886007	Switchgrass Rhizosphere	LLDRKLDAKKPSPPNVEASVNPKVEQLAHVLEITLIVVPDSADLLNFNFRFLIIYRLKFTKIATRTELIQVKINASIISLGT
SwRhRL2b_0646.00004260	2162886007	Switchgrass Rhizosphere	LPDRKLETTIANPPNVEARMNPKVEQLAQALEITLIVVPATADLLILNFKSLIICKLKFTKTATRIELIQDKKKYYQAYHW
F24TB_150968361	3300000550	Soil	LLDRKLDAKKPSPPNVEASVNPKVEQLPHVLEITLIVVPDSADLLNFNFRFLIIYRLKFTKIATRTELIQVKINASIISLGT*
JGI11615J12901_100205581	3300000953	Soil	LLDRKLDVKKPSPPNVEARVNPNVEQLAHVLESTLIVVPERADLLSFNFRFLIKNRLKFTNIVTRTEL
JGI26129J50193_10001043	3300003349	Arabidopsis Thaliana Rhizosphere	LLDRKLDAKKPSPPNVEASVNPKVEQLAHVLEITLIVVPDSADLLNFNLRFLIIYRLKFTKTAIRTELIQVKINASIISLGT*
JGI26142J50222_1001835	3300003379	Arabidopsis Thaliana Rhizosphere	LLDRKLNAKKPSPPNVEASVNPKVEQLAHVLEITLIVVPDSADLLNFNFRFLIIYRLKFTKIAIRTELIQVKINASIISLGT*
JGI26139J50223_1001487	3300003382	Arabidopsis Thaliana Rhizosphere	LLDRKLNAKKPSPPNVEASVNPKVEQLAHVLEITLIVVPDSADLLNFNLRFLIIYRLKFTKIAIRTELIQVKINASIISLGT*
JGI26134J50242_1001121	3300003392	Arabidopsis Thaliana Rhizosphere	NAKKPSPPNVEASVNPKVEQLAHVLEITLIVVPDSADLLNFNFRFLIIYRLKFTKIAIRTELIQVKINASIISLGT*
JGI26137J50245_1000314	3300003396	Arabidopsis Thaliana Rhizosphere	LLDRKLDAKKPSPPNVEASVNPKVEQLAHVLEITLIVVPESADLLNFNFRFLIIYRLKFTKIAIRTELIQVKINASIISLGT*
JGI26141J51220_10129201	3300003503	Arabidopsis Thaliana Rhizosphere	LLDRKLDAKKPSPPNVEASVNPKVEQLAHVLEITLIVVPDSADLLNFNXRFLIIYRLKFTKXAIRTELIQVKINASIISLGT*
Ga0055467_100993511	3300003996	Natural And Restored Wetlands	LLDRKLDAKKPSPPNVEASVNPKVEQLAHVLEITLIVVPDSADLLNFNFRFLIIYRLKFTKIAIRTELIQVKINTSIISLGT*
Ga0062590_1024762291	3300004157	Soil	LLDRKLDVKKPSPPNVEARVNPNVEQLAHVLESTLIVVPERADLLSFNFRFLIKNRLKFTNIVTRTELIQVKINALNISLGT*
Ga0062591_1019933901	3300004643	Soil	LDRKLDVKKPSPPNVEARVNPNVEQLAHVLESTLIVVPERADLLSFNFRFLIKNRLKFTNIVTRTELIQVKINALNISLGT*
Ga0062594_1018870141	3300005093	Soil	LDAKKPSPPNVEARVNPKVEQLAHVLESTLIVVPERADLLSFNFRFLIKNRLKFTNIVTRTELIQVKINALNISLGT*
Ga0065706_10003767	3300005269	Switchgrass Rhizosphere	LLDRKLDAKKPSPPNVEARVNPKVEQLAHVLEITLIVVPDSADLLNFNFRFLIIYRLKFTKIATRTELIQVKINASIISLGT*
Ga0065704_100327711	3300005289	Switchgrass Rhizosphere	LPDRKLETTTANPPKVEASMNPKVEQLAHVLEITLIVVPATADLLILNFKSLIICKLKFTKTATRIELIQDKK
Ga0065704_103783572	3300005289	Switchgrass Rhizosphere	ANPPKVEASMNPKVEQLAHALEITLIVVPATADLLILNFKFLIICKLKFTKTATRIELIQDKKNTPSISLGT*
Ga0065707_108780061	3300005295	Switchgrass Rhizosphere	LPDRKLETTTANPPKVEASMNPKVEQLAHVLEITLIVVPATADLLILNFKSLIICKLKFTKTATRIELIQV
Ga0068869_1010755831	3300005334	Miscanthus Rhizosphere	LLDRKLDAKKPSPPNVEASVNPKVEQLAHVLEITLIVVPDSADLLNFNFRFLIIYRLKFTKIATRTELIQVKINASITSLGT*
Ga0070680_1017570121	3300005336	Corn Rhizosphere	LLDRKLDAKKPSPPNVEARVNPKVEQLAHVLESTLIVVPERADLLSFNFRFLIKNRLKFTKIVTRTELIQVRINA
Ga0070687_1006389082	3300005343	Switchgrass Rhizosphere	LLDRKLDAKKPSPPNVEASVNPKVEQLAHVLEITLIVVPDSADLLNFNFRFLIIYRLKFTKIAIRTELIQVKINASIISLGT*
Ga0070692_100731753	3300005345	Corn, Switchgrass And Miscanthus Rhizosphere	LLDRKLDAKKPSPPNVEARVNPKVEQLAHVLESTLIVVPERADLLSFNFRFLIKNRLKFTKIVTRTELIQVRINASNISLGT*
Ga0070669_1016438251	3300005353	Switchgrass Rhizosphere	LLDRKLNAKKPSPPNVEASVNPKVEQLAHVLEITLIVVPDSADLLNFNFRFLIIYRLKFTKIAIRTELIQVKINASII
Ga0070667_1015242401	3300005367	Switchgrass Rhizosphere	LLDRKLDAKKPSPPNVEASVNPKVEQLAHVLEITLIVVPDSADLLNFNFRFLIIYRLKFTKIAIRTELIQVKINASII
Ga0070700_1005906422	3300005441	Corn, Switchgrass And Miscanthus Rhizosphere	LLDRNLDAKKPSPPNVEASVNPKVEQLAHVLEITLIVVPDSADLLNFNFRFLIIYRLKFTKIATRTELIQVKINASITSLGT*
Ga0070681_113781541	3300005458	Corn Rhizosphere	LLDRKLDAKKPSPPNVEARVNPKVEQLAHVLESTLIVVPERADLLSFNFRFLIKNRLKFTNIVTRTELIQVKINALNISLGT*
Ga0070679_1009683412	3300005530	Corn Rhizosphere	LLDRKLDAKKPSPPNVEARVNPKVEQLAHVLESTLIVVPERADLLSFNFRFLIKNRLKFTNIVTRTELIQVKINASNISLGT*
Ga0070704_1019227042	3300005549	Corn, Switchgrass And Miscanthus Rhizosphere	DAKKPSPPNVEASVNPKVEQLAHVLEITLIVVPDSADLLNFNFRFLIIYRLKFTKIAIRTELIQVKINASIISLGT*
Ga0070702_1005375152	3300005615	Corn, Switchgrass And Miscanthus Rhizosphere	LLDRKLDAKKPSPPNVEASVNPKVEQLAHVLEITLIVVPDSADLLNFNFRFLIIYRLKFTKIAIRTELIQVKIN
Ga0075419_101859582	3300006969	Populus Rhizosphere	LPDRKLETTTANPPNVEARMNPKVEQLAQALEITLIVVPATADLLILNFKSLIICKLKFTKTATRIELIQDKKNTPSISLGT*
Ga0075419_104432532	3300006969	Populus Rhizosphere	MSVEISLIIVLPDRKLETTTANPPNVEASMNPKVEQLAHALEITLIVVPATADLLILNFKSLIICKLKFTKTATRIELIQVKKNTPSISLGT
Ga0105240_106693812	3300009093	Corn Rhizosphere	LLDRKLDAKKPSPPNVEARVNPKVEQLAHVLEITLIVVPDSADLLNFNFRFLIIYRLKFTKIAIRTELIQVKINASIISLGT*
Ga0114129_105554052	3300009147	Populus Rhizosphere	LPDRKLETTTANPPNVEASMNPKVEQLAHALEITLIVVPATADLLILNFKSLIICKLKFTKTATRIELIQVKKNTPSISLGT*
Ga0114129_105555323	3300009147	Populus Rhizosphere	LLDRKLDAKKPSPPNVEASVNPKVEQLAHVLEIRLIVVPDSADLLNFNFRFLIIYRLKFTKIAIRTELIQVKINASIISLGT*
Ga0114129_126410901	3300009147	Populus Rhizosphere	MVDIPLNVI*LLDRKLDAKKPSPPNVEASVNPKVEQLAHVLEITLIVVPDSADLLNFNFRFLIIYRLKFTKIATRTELIQALNRNK
Ga0111538_135003041	3300009156	Populus Rhizosphere	KLDAKKPSPPNVEASVNPKVEQLAHVLEITLIVVPDSADLLNFNFRFLIIYRLKFTKIATRTELIQVKINASITSLGT*
Ga0105242_100539406	3300009176	Miscanthus Rhizosphere	LLDRKLDVKKPSPPNVEARVNPNVEQLAHVLESTLIVVPERADLLSFNFRFLIKNRLKFTKIVTRTELIQVRINASNISLGT*
Ga0105242_102476202	3300009176	Miscanthus Rhizosphere	LLDRKLDAKKPSPPNVEASVNPKVEQLAHVLEITLIVVPDSADLLNFNFRFLIIYRLKFTKIAIRTELIQVKINASIMSLGT*
Ga0105249_113874031	3300009553	Switchgrass Rhizosphere	KKPSPPNVEASVNPKVEQLAHVLEITLIVVPDSADLLNFNFRFLIIYRLKFTKIATRTELIQVKINASIISLGT*
Ga0134086_100742922	3300010323	Grasslands Soil	LPDRKLETTTANPPNVEASMNPKVEQLAHALEITLIVVPATADLLILNFKSLIICKLKFTKTTTRIELIQVKINTPSISLGT*
Ga0134111_100832361	3300010329	Grasslands Soil	LPDRKLETTTANPPNVEASMNPKVEQLAHALEITLIVVPATADLLILNFKSLIICKLKFTKTATRIELIQDKKNTPSISLGT*
Ga0134126_113803461	3300010396	Terrestrial Soil	LLDRKLDVKKPSPPNVEARVNPKVEQLAHVLESTLIVVPERADLLSFNFRFLIKNRLKFTKIVTRTELIQVRINASNISLGT*
Ga0134124_104041042	3300010397	Terrestrial Soil	LLDRKLDVKKPSPPNVEARVNPNVEQLAHVLESTLIVVPERADLLSFNFRFLIKNRLKFTNIVTRTELIQVKINAP
Ga0134127_100925293	3300010399	Terrestrial Soil	LLDRKLDAKKPSPPNVEASMNPKVEQLAHVLEITLIVVPDSADLLNFNFRFLIIYRLKFTKIAIRTELIQVKINASIISLGT*
Ga0134122_103265932	3300010400	Terrestrial Soil	LLDRKLDAKKPSPPNVEARVNPKVEQLAHVLESTLIVVPERADLLSFNFRFLIKNRLKFTKIVTRTELIQVG*
Ga0134123_114537512	3300010403	Terrestrial Soil	LLDRKLDVKKPSPPNVEARVNPNVEQLAHVLESTLIVVPERADLLSFNFRFLIKNRLKFTNIVTRTELIQVKINASNISLGT*
Ga0137374_100303952	3300012204	Vadose Zone Soil	LPDRKLETTTANPPNVEASMNPKVEQVAHALEITLIVVPATADLLIFNFRSLMICKLKFTKTATRIELIQVKINTPSISLGT*
Ga0157309_100504752	3300012895	Soil	LLDRNLDAKKPSPPNVEASVNPKVEQLAHVLEITLIVVPDSADLLNFNFRFLIIYRLKFTKIAIRTELIQVKINASIISLGT*
Ga0157293_100310942	3300012898	Soil	LLDRKLDAKKPSPPNVEASVNPKVEQLAHVLEITLIVVPDSADLLNFNFRFLIIYRLKFTKTAIRTELIQVKINASIISLGT*
Ga0157292_100051111	3300012900	Soil	AKKPSPPNVEASVNPKVEQLAHVLEITLIVVPDSADLLNFNFRFLIIYRLKFTKIAIRTELIQVKINASIISLGT*
Ga0157282_100224232	3300012904	Soil	LLDRKLDAKKPSPPNVEASVNPKVEQLAHVLEITFIVVPDSADLLNFNFRFLIIYRLKFTKIAIRTELIQVKINASIISLGT*
Ga0157286_100046263	3300012908	Soil	LLDRKLNAKKPSPPNVEASVNPKVEQLAHVLEITLIVVPDSADLLNFNFRFLIIYRLKFTKTAIRTELIQVKINASIISLGT*
Ga0157290_101270482	3300012909	Soil	LLDRKLDAKKPSPPNVEASVNPKVEQLAHVLEITLIVVPDSADLLNFNFRFLIIYRLKFTKIAIRTELIQVKI
Ga0157308_100492412	3300012910	Soil	LLDRKLNAKKPSPPNVEASVNPKVEQLAHVLEITLIVVPDSADLLNFNFRFLIIYRLKFTKIAIRTELIQVKINASIISL
Ga0157298_101847511	3300012913	Soil	LLDRKLNAKKPSPPNVEASVNPKVEQLAHVLEITLIVVPDSADLLNFNLRFLIIYRLKFTKTAIRTELIQVKINASIISLGT*
Ga0157307_10878241	3300013096	Soil	KKPSPPNVEASVNPKVEQLAHVLEITLIVVPDSADLLNFNFRFLIIYRLKFTKIATRTELIQVKINASITSLGT*
Ga0132256_1037968321	3300015372	Arabidopsis Rhizosphere	LPDRKLETTTANPPNVEARMNPKVEQLAQALVITLIVVPATADLLILNFKSLIICKLKFTKTATRIELIQDKKNTPSISLG
Ga0134069_11679671	3300017654	Grasslands Soil	VEISLIIVXLPDRKLETTTANPPNVEASMNPKVEQLAHALEITLIVVPATADLLILNFKSLIICKLKFTKTATRIELIQDKKNTPSI
Ga0134112_101720381	3300017656	Grasslands Soil	LPDRKLETTTANPPNVEASMNPKVEQLAHALEITLIVVPATADLLILNFKSLIICKLKFTKTATRIELIQDKKNTPSISL
Ga0184610_10609662	3300017997	Groundwater Sediment	VEISLIIVXLPDRKLETTTANPPNVEASMNPKVEQLAHALEITLIVVPATADLLILNFKSLIICKLKFTKTATRIELIQDKKNTPSISLGT
Ga0184608_100928712	3300018028	Groundwater Sediment	LLDRKLDAKKPSPPNVEASVNPKVEQLAHVLEITLIVVPDSADLLNFNFRFLIIYRLKFTKIATRTELIQV
Ga0184621_101419352	3300018054	Groundwater Sediment	LPDRKLETTTANPPNVEASMNPKVEQLAHALEITLIVVPATADLLILNFKSLIICKLKFTKTATRIELIQDKKNTPSISLGT
Ga0184611_12496761	3300018067	Groundwater Sediment	VDIPLNVIXLLDRKLDAKKPSPPNVEASVNPKVEQLAHVLEITLIVVPDSADLLNFNFRFLIKYRLKFTKIATRTELIQVKINASIISLGT
Ga0184609_104316731	3300018076	Groundwater Sediment	LLDRKLDAKKPSPPNVEASVNPKVEQLAHVLERTLIVVPDSADLLNFNFRFLIVYRLKFTKIATRTELIQVKINA
Ga0190269_119051181	3300018465	Soil	MVDIPLNVIXLLDRKLDAKKPSPPNVEASVNPKVEQLAHVLEITLIVVPDSADLLNFNFRFLIIYRLKFTKIATRTEL
Ga0193700_10013943	3300019873	Soil	LPDRKLETTTANPPNVEASMNPKVEQLAHALEITLIVVPATAYLLILNFKSLIICKLKFTKTATRIELIQDKKNTPSISLGT
Ga0193697_10609191	3300020005	Soil	LLDRKLDAKKPSPPNVEASVNPKVEQLAHVLEITLIVVPDSADLLNFNFRFLIVYRLKFTKIATRTELIQV
Ga0193696_10357932	3300020016	Soil	VDIPLKVIWLLDRKLDAKKPSPPNVEASVNPKVEQLAHVLEITLIVVPDSADLLNFNFRFLIIYRLKFTKIATRTELIQV
Ga0210381_103573501	3300021078	Groundwater Sediment	LLDRKLDAKKPSPPNVEASVNPKVEQLAHVLERTLIIVPDSADLLNFNFRFLIIYRLKFTKIATRTELIQVKI
Ga0222622_100429754	3300022756	Groundwater Sediment	DRKLETTTANPPNVEASMNPKVEQLAHALEITLIVVPATADLLILNFKSLIICKLKFTKTATRIELIQDKKNTPSISLGT
Ga0222622_113267741	3300022756	Groundwater Sediment	LLDRKLDAKKPSPPNVEASVNPKVEQLAHVLERTLIIVPDSADLLNFNFRFLIIYRLKFTKIATRTELIQVK
Ga0247753_10274401	3300022892	Soil	AKKPSPPNVEASVNPKVEQLAHVLEITLIVVPDSADLLNFNFRFLIIYRLKFTKIAIRTELIQVKINASIISLGT
Ga0247752_10302122	3300023071	Soil	MVDILLNVIXLLDRNLDAKKPSPPNVEASVNPKVEQLAHVLEITLIVVPDSADLLNFNFRFLIIYRLKFTKIATRTELIQVKINASITSLGT
Ga0247802_10627292	3300023077	Soil	NVEASVNPKVEQLAHVLEITLIVVPDSADLLNFNFRFLIIYRLKFTKTAIRTELIQVKINASIISLGT
Ga0210114_10501181	3300025795	Natural And Restored Wetlands	VEASVNPKVEQLAHVLEITLIVVPDSADLLNFNFRFLIIYRLKFTKIAIRTELIQVKINTSIISLGT
Ga0210113_10850911	3300025796	Natural And Restored Wetlands	VIXLLDRKLDAKKPSPPNVEASVNPKVEQLAHVLEITLIVVPDSADLLNFNFRFLIIYRLKFTKIAIRTELIQVKINTSIISLGT
Ga0207688_106709081	3300025901	Corn, Switchgrass And Miscanthus Rhizosphere	IALNVIXLLDRKLDAKKPSPPNVEASVNPKVEQLAHVLEITLIVVPDSADLLNFNFRFLIIYRLKFTKIAIRTELIQVKINALNISLGT
Ga0207643_103791111	3300025908	Miscanthus Rhizosphere	LDRKLDAKKPSPPNVEARVNPKVEQLAHVLESTLIVVPERADLLSFNFRFLIKNRLKFTNIVTRTELIQVKINALNISLGT
Ga0207660_115225471	3300025917	Corn Rhizosphere	VQIANSKTIVEIPLKVIXLLDRKLDAKKPSPPNVEARVNPKVEQLAHVLESTLIVVPERADLLSFNFRFLIKNRLKFTKIVTRTELIQVRINA
Ga0207652_107052582	3300025921	Corn Rhizosphere	KLDAKKPSPPNVEASVNPKVEQLAHVLEITLIVVPDSADLLNFNFRFLIIYRLKFTKIAIRTELIQVKINASIISLGT
Ga0207650_101786971	3300025925	Switchgrass Rhizosphere	LLDRKLDVKKPSPPNVEARVNPNVEQLAHVLESTLIVVPERADLLSFNFRFLIKNRLKFTNIVTRTELIQVKINALNISLGT
Ga0207669_118368671	3300025937	Miscanthus Rhizosphere	MVDILLNVIXLLDRNLDAKKPSPPNVEASVNPKVEQLAHVLEITLIVVPDSADLLNFNFRFLIIYRLKFTKIAIRTELIQVKINASIISLGT
Ga0207689_114206792	3300025942	Miscanthus Rhizosphere	LLDRKLDAKKPSPPNVEASVNPKVEQLAHVLEITLIVVPDSADLLNFNFRFLIIYRLKFTKIAIRTELIQVKINASIMSLGT
Ga0207679_101968941	3300025945	Corn Rhizosphere	RKLDAKKPSPPNVEASVNPKVEQLAHVLEITLIVVPDSADLLNFNFRFLIIYRLKFTKIAIRTELIQVKINASIISLGT
Ga0207676_1000979710	3300026095	Switchgrass Rhizosphere	LLDRKLDAKKPSPPNVEASVNPKVEQLAHVLEITLIVVPDSADLLNFNFRFLIIYRLKFTKIAIRTELIQVKINASIISLGT
Ga0207440_1031541	3300026720	Soil	KVIXLLDRKLNAKKPSPPNVEASVNPKVEQLAHVLEITLIVVPDSADLLNFNFRFLIIYRLKFTKIAIRTELIQVKINASIISLGT
Ga0207614_1017131	3300026726	Soil	SKTIVDIALNVIXLLDRKLDAKKPSPPNVEASVNPKVEQLAHVLEITLIVVPDSADLLNFNFRFLIIYRLKFTKIAIRTELIQVKINASIISLGT
Ga0207523_1007621	3300026731	Soil	PPNVEASVNPKVEQLAHVLEITLIVVPDSADLLNFNLRFLIIYRLKFTKTAIRTELIQVKINASIISLGT
Ga0207503_10141051	3300026861	Soil	KVIXLLDRKLNAKKPSPPNVEASVNPKVEQLAHVLEITLIVVPDSADLLNFNFRFLIIYRLKFTKIAIRTELIQVKINASIMSLGT
Ga0209973_10092292	3300027252	Arabidopsis Thaliana Rhizosphere	KPSPPNVEASVNPKVEQLAHVLEITLIVVPDSADLLNFNLRFLIIYRLKFTKTAIRTELIQVKINASIISLGT
Ga0209969_10187291	3300027360	Arabidopsis Thaliana Rhizosphere	LDAKKPSPPNVEASVNPKVEQLAHVLEITLIVVPDSADLLNFNFRFLIIYRLKFTKIATRTELIQVKINASITSLGT
Ga0209969_10277101	3300027360	Arabidopsis Thaliana Rhizosphere	LDAKKPSPPNVEASVNPKVEQLAHVLEITLIVVPDSADLLNFNLRFLIIYRLKFTKTAIRTELIQVKINASIISLGT
Ga0209996_10322482	3300027395	Arabidopsis Thaliana Rhizosphere	LNVIXLLDRKLDAKKPSPPNVEASVNPKVEQLAHVLEITLIVVPDSADLLNFNLRFLIIYRLKFTKTAIRTELIQVKINASIISLGT
Ga0207493_1019441	3300027436	Soil	NAKKPSPPNVEASVNPKVEQLAHVLEITLIVVPDSADLLNFNFRFLIIYRLKFTKIATRTELIQVKINASIISLGT
Ga0247750_10260741	3300027992	Soil	IXLLDRKLDAKKPSPPNVEASVNPKVEQLAHVLEITLIVVPDSADLLNFNFRFLIIYRLKFTKIAIRTELIQVKINASIISLGT
Ga0268265_108527581	3300028380	Switchgrass Rhizosphere	LLDRNLDAKKPSPPNVEASVNPKVEQLAHVLEITLIVVPDSADLLNFNFRFLIIYRLKFTKIATRTELIQVKINASITSLGT
Ga0268265_108547351	3300028380	Switchgrass Rhizosphere	DRKLNAKKPSPPNVEASVNPKVEQLAHVLEITLIVVPDSADLLNFNFRFLIIYRLKFTKIAIRTELIQVKINASIISLGT
Ga0307276_102065721	3300028705	Soil	VDIPLNVIWLLDRKLDAKKPSPPNIEASVNPKVEQLAHVLERTLIVVPDSADLLNFNFRFLIVYRLKFTKIATRT
Ga0307299_101267401	3300028793	Soil	KLETTTANPPNVEASMNPKVEQVAHALEITLIVVPATADLLILNFKSLIICKLKFTKTTTRIELIQVKINTPSISLGT
Ga0307292_104123691	3300028811	Soil	VEISLIIIXLPDRKLETTTANPPNVEASMNPKVEQLAHALEITLIVVPATADLLILNFKSLIICKLKFTKTATRIELIQDKKNTPSISLGT
Ga0308201_100803422	3300031091	Soil	LPDRKLETTTANPPNVEASMNPKVEQLAHALEITLIVVPATADLLILNFKSLIICKLKFTKTATTIELIQDKKNTPSISLGT
Ga0310888_104408162	3300031538	Soil	AKKPSPPNVEASVNPKVEQLAHVLEITLIVVPDSADLLNFNLRFLIIYRLKFTKTAIRTELIQVKINASIISLGT
Ga0310907_106217461	3300031847	Soil	MVDIPLNVSXLLDRKLDAKKPNPPNVEASVNPKVEQLAHVLEITLIVVPDSADLLNFNFRFLIIYRLKFTKNATRTELIQVKINASIISLGT
Ga0310893_102028593	3300031892	Soil	DRNLDAKKPSPPNVEASVNPKVEQLAHVLEITLIVVPDSADLLNFNFRFLIIYRLKFTKIATRTELIQVKINASITSLGT
Ga0310891_100509392	3300031913	Soil	KKPNPPNVEASVNPKVEQLAHVLEITLIVVPDSADLLNFNFRFLIIYRLKFTKIATRTELIQVKINASIISLGT
Ga0310891_100586833	3300031913	Soil	LDRNLDAKKPSPPNVEASVNPKVEQLAHVLEITLIVVPDSADLLNFNFRFLIIYRLKFTKIATRTELIQVKINASITSLGT
Ga0310891_100998252	3300031913	Soil	LLDRKLDAKKPSPPNVEASVNPKVEQLAHVLEITLIVVPDSADLLNFNFRFLIIYRLKFTKIANRTELIQ
Ga0310901_100116153	3300031940	Soil	LLDRKLDAKKPNPPNVEASVNPKVEQLAHVLEITLIVVPDSADLLNFNFRFLIIYRLKFTKIATRTELIQVKINASITSLGT
Ga0310885_103401462	3300031943	Soil	DRKLDAKKPSPPNVEASVNPKVEQLAHVLEITLIVVPDSADLLNFNFRFLIIYRLKFTKIAIRTELIQVKINASIISLGT
Ga0310903_100725833	3300032000	Soil	NPPNVEASVNPKVEQLAHVLEITLIVVPDSADLLNFNFRFLIIYRLKFTKNATRTELIQVKINASIISLGT
Ga0310906_103761332	3300032013	Soil	LLDRKLDAKKPNPPNVEASVNPKVEQLAHVLEITLIVVPDSADLLNFNFRFLIIYRLKFTKNATRTELIQVKINASIISLGT
Ga0310889_100690434	3300032179	Soil	NVIXLLDRKLDAKKPSPPNVEASVNPKVEQLAHVLEITLIVVPDSADLLNFNFRFLIIYRLKFTKIATRTELIQVKINASITSLGT

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F081936

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences

Hidden Markov Model


Click on a Sequence Logo column to get its information.
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