Metagenome / Metatranscriptome Family F084326

Basic Information
Family ID	F084326
Family Type	Metagenome / Metatranscriptome
Number of Sequences	112
Average Sequence Length	55 residues
Representative Sequence	IGFLNGGSSWEYAQMAATFRKGFGETGLLIVVLALVKPLSPPGDLSGQLICGPIEA
Number of Associated Samples	104
Number of Associated Scaffolds	112

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	27.03 %
% of genes near scaffold ends (potentially truncated)	66.07 %
% of genes from short scaffolds (< 2000 bps)	82.14 %
Associated GOLD sequencing projects	101
AlphaFold2 3D model prediction	No

Most Common Taxonomy
Group	Unclassified (61.607 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (25.893 % of family members)
Environment Ontology (ENVO)	Unclassified (29.464 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (36.607 % of family members)

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 33.93% β-sheet: 5.36% Coil/Unstructured: 60.71%
Feature Viewer

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Pfam ID	Name	% Frequency in 112 Family Scaffolds
PF13738	Pyr_redox_3	10.71
PF03237	Terminase_6N	6.25
PF04392	ABC_sub_bind	3.57
PF00027	cNMP_binding	2.68
PF06267	DUF1028	2.68
PF03411	Peptidase_M74	1.79
PF01494	FAD_binding_3	1.79
PF01042	Ribonuc_L-PSP	1.79
PF13408	Zn_ribbon_recom	0.89
PF00939	Na_sulph_symp	0.89
PF13531	SBP_bac_11	0.89
PF13340	DUF4096	0.89
PF12697	Abhydrolase_6	0.89
PF13561	adh_short_C2	0.89
PF01527	HTH_Tnp_1	0.89

COG ID	Name	Functional Category	% Frequency in 112 Family Scaffolds
COG0654	2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases	Energy production and conversion [C]	3.57
COG2984	ABC-type uncharacterized transport system, periplasmic component	General function prediction only [R]	3.57
COG3342	Uncharacterized conserved protein, Ntn-hydrolase superfamily	General function prediction only [R]	2.68
COG0251	Enamine deaminase RidA/Endoribonuclease Rid7C, YjgF/YER057c/UK114 family	Defense mechanisms [V]	1.79
COG0578	Glycerol-3-phosphate dehydrogenase	Energy production and conversion [C]	1.79
COG0644	Dehydrogenase (flavoprotein)	Energy production and conversion [C]	1.79
COG0665	Glycine/D-amino acid oxidase (deaminating)	Amino acid transport and metabolism [E]	1.79
COG3770	Murein endopeptidase MepA (D-alanyl-D-alanine-endopeptidase)	Cell wall/membrane/envelope biogenesis [M]	1.79
COG0471	Di- and tricarboxylate antiporter	Carbohydrate transport and metabolism [G]	0.89
COG1055	Na+/H+ antiporter NhaD or related arsenite permease	Inorganic ion transport and metabolism [P]	0.89

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	61.61 %
All Organisms	root	All Organisms	38.39 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	61.61 %
cellular organisms	root	All Organisms → cellular organisms	38.39 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	61.61 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	38.39 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	61.61 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	24.11 %
Bacteria incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis	0.89 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	61.61 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	20.54 %
Bacteria candidate phyla	clade	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla	0.89 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	61.61 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	18.75 %
Candidatus Rokubacteria	phylum	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	0.89 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	61.61 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	7.14 %
unclassified Candidatus Rokubacteria	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria	0.89 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	61.61 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	4.46 %
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	0.89 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	61.61 %
Bradyrhizobium pachyrhizi	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium pachyrhizi	0.89 %
unclassified Bradyrhizobium	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium	0.89 %
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	0.89 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	61.61 %
Bradyrhizobium sp. th.b2	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. th.b2	0.89 %
Bradyrhizobium pachyrhizi	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium pachyrhizi	0.89 %
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	0.89 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2166559005\|cont_contig114113	Not Available	525	Open in IMG/M
3300000550\|F24TB_11632455	Not Available	530	Open in IMG/M
3300001305\|C688J14111_10089386	Not Available	936	Open in IMG/M
3300001977\|JGI24746J21847_1003957	Not Available	2342	Open in IMG/M
3300002067\|JGI24735J21928_10202779	All Organisms → cellular organisms → Bacteria	575	Open in IMG/M
3300002568\|C688J35102_120541237	Not Available	1161	Open in IMG/M
3300005146\|Ga0066817_1033204	Not Available	522	Open in IMG/M
3300005147\|Ga0066821_1021781	Not Available	546	Open in IMG/M
3300005294\|Ga0065705_10677233	Not Available	664	Open in IMG/M
3300005328\|Ga0070676_10016591	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	4074	Open in IMG/M
3300005328\|Ga0070676_10513492	Not Available	852	Open in IMG/M
3300005331\|Ga0070670_100230483	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1612	Open in IMG/M
3300005332\|Ga0066388_100196012	All Organisms → cellular organisms → Bacteria	2637	Open in IMG/M
3300005332\|Ga0066388_102218502	Not Available	991	Open in IMG/M
3300005332\|Ga0066388_102957039	Not Available	868	Open in IMG/M
3300005338\|Ga0068868_101473603	All Organisms → cellular organisms → Bacteria → Proteobacteria	636	Open in IMG/M
3300005341\|Ga0070691_10144359	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1215	Open in IMG/M
3300005343\|Ga0070687_100776075	Not Available	677	Open in IMG/M
3300005406\|Ga0070703_10239980	All Organisms → cellular organisms → Bacteria	730	Open in IMG/M
3300005539\|Ga0068853_100025612	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	4952	Open in IMG/M
3300005577\|Ga0068857_101149172	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	751	Open in IMG/M
3300005713\|Ga0066905_102295265	Not Available	504	Open in IMG/M
3300005764\|Ga0066903_102884174	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	932	Open in IMG/M
3300005764\|Ga0066903_106859598	Not Available	591	Open in IMG/M
3300005937\|Ga0081455_10210773	All Organisms → cellular organisms → Bacteria	1448	Open in IMG/M
3300006353\|Ga0075370_10738470	Not Available	599	Open in IMG/M
3300006603\|Ga0074064_11808660	Not Available	656	Open in IMG/M
3300006791\|Ga0066653_10335193	All Organisms → cellular organisms → Bacteria	764	Open in IMG/M
3300006904\|Ga0075424_102206037	Not Available	580	Open in IMG/M
3300009011\|Ga0105251_10293663	Not Available	736	Open in IMG/M
3300009100\|Ga0075418_10475670	Not Available	1340	Open in IMG/M
3300009147\|Ga0114129_11367790	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	875	Open in IMG/M
3300009156\|Ga0111538_13805479	Not Available	522	Open in IMG/M
3300010046\|Ga0126384_12297815	Not Available	520	Open in IMG/M
3300010048\|Ga0126373_12881511	All Organisms → cellular organisms → Bacteria	537	Open in IMG/M
3300010359\|Ga0126376_10929628	All Organisms → cellular organisms → Bacteria	863	Open in IMG/M
3300010373\|Ga0134128_10028962	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	6525	Open in IMG/M
3300010396\|Ga0134126_12207503	Not Available	600	Open in IMG/M
3300011119\|Ga0105246_10013460	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	5130	Open in IMG/M
3300012199\|Ga0137383_10976040	Not Available	618	Open in IMG/M
3300012205\|Ga0137362_11082690	Not Available	681	Open in IMG/M
3300012357\|Ga0137384_11537419	Not Available	515	Open in IMG/M
3300012489\|Ga0157349_1014164	Not Available	684	Open in IMG/M
3300012892\|Ga0157294_10140433	Not Available	662	Open in IMG/M
3300012955\|Ga0164298_10005215	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	4624	Open in IMG/M
3300012957\|Ga0164303_11155151	Not Available	563	Open in IMG/M
3300012958\|Ga0164299_10024297	All Organisms → cellular organisms → Bacteria → Proteobacteria	2539	Open in IMG/M
3300012971\|Ga0126369_10498689	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium pachyrhizi	1275	Open in IMG/M
3300012971\|Ga0126369_12809705	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	570	Open in IMG/M
3300012989\|Ga0164305_10015256	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	3855	Open in IMG/M
3300015200\|Ga0173480_10554379	All Organisms → cellular organisms → Bacteria	698	Open in IMG/M
3300015245\|Ga0137409_11002882	Not Available	672	Open in IMG/M
3300015371\|Ga0132258_10718520	All Organisms → cellular organisms → Bacteria	2516	Open in IMG/M
3300015372\|Ga0132256_100369288	All Organisms → cellular organisms → Bacteria	1532	Open in IMG/M
3300015374\|Ga0132255_104472697	Not Available	593	Open in IMG/M
3300015374\|Ga0132255_105397156	All Organisms → cellular organisms → Bacteria	541	Open in IMG/M
3300016319\|Ga0182033_10538973	Not Available	1007	Open in IMG/M
3300016357\|Ga0182032_11946533	Not Available	515	Open in IMG/M
3300017792\|Ga0163161_10729649	Not Available	827	Open in IMG/M
3300018053\|Ga0184626_10216940	Not Available	808	Open in IMG/M
3300018055\|Ga0184616_10050230	All Organisms → cellular organisms → Bacteria	1392	Open in IMG/M
3300018067\|Ga0184611_1005286	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	3329	Open in IMG/M
3300018071\|Ga0184618_10229091	Not Available	783	Open in IMG/M
3300018072\|Ga0184635_10006943	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	3753	Open in IMG/M
3300018081\|Ga0184625_10031843	Not Available	2585	Open in IMG/M
3300018081\|Ga0184625_10088503	All Organisms → cellular organisms → Bacteria	1590	Open in IMG/M
3300018082\|Ga0184639_10239957	Not Available	959	Open in IMG/M
3300018429\|Ga0190272_12371793	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	574	Open in IMG/M
3300019356\|Ga0173481_10558751	Not Available	594	Open in IMG/M
3300019872\|Ga0193754_1025588	Not Available	635	Open in IMG/M
3300019875\|Ga0193701_1012537	Not Available	1690	Open in IMG/M
3300019877\|Ga0193722_1085846	Not Available	768	Open in IMG/M
3300020004\|Ga0193755_1209078	Not Available	551	Open in IMG/M
3300020006\|Ga0193735_1136581	Not Available	652	Open in IMG/M
3300020016\|Ga0193696_1099310	Not Available	748	Open in IMG/M
3300020199\|Ga0179592_10379076	Not Available	620	Open in IMG/M
3300021080\|Ga0210382_10305952	Not Available	699	Open in IMG/M
3300021362\|Ga0213882_10248318	Not Available	738	Open in IMG/M
3300025885\|Ga0207653_10451905	Not Available	504	Open in IMG/M
3300025906\|Ga0207699_10317664	Not Available	1092	Open in IMG/M
3300025931\|Ga0207644_11440481	Not Available	578	Open in IMG/M
3300025937\|Ga0207669_11643303	Not Available	548	Open in IMG/M
3300025949\|Ga0207667_11015422	Not Available	816	Open in IMG/M
3300026857\|Ga0208893_1001194	Not Available	786	Open in IMG/M
3300027560\|Ga0207981_1004473	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2479	Open in IMG/M
3300028379\|Ga0268266_10035207	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	4259	Open in IMG/M
3300028719\|Ga0307301_10179829	Not Available	684	Open in IMG/M
3300028719\|Ga0307301_10278936	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. th.b2	547	Open in IMG/M
3300028754\|Ga0307297_10004632	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	3386	Open in IMG/M
3300028796\|Ga0307287_10004063	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	4752	Open in IMG/M
3300028810\|Ga0307294_10187332	Not Available	708	Open in IMG/M
3300028819\|Ga0307296_10006245	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	6260	Open in IMG/M
3300028884\|Ga0307308_10485587	Not Available	592	Open in IMG/M
3300028885\|Ga0307304_10334358	Not Available	674	Open in IMG/M
3300030844\|Ga0075377_11478256	Not Available	684	Open in IMG/M
3300030987\|Ga0308155_1011707	Not Available	723	Open in IMG/M
3300030990\|Ga0308178_1078464	Not Available	668	Open in IMG/M
3300031082\|Ga0308192_1044412	Not Available	652	Open in IMG/M
3300031095\|Ga0308184_1046970	Not Available	549	Open in IMG/M
3300031096\|Ga0308193_1084911	Not Available	524	Open in IMG/M
3300031184\|Ga0307499_10266757	Not Available	552	Open in IMG/M
3300031422\|Ga0308186_1040344	Not Available	507	Open in IMG/M
3300031680\|Ga0318574_10564850	All Organisms → cellular organisms → Bacteria → Proteobacteria	667	Open in IMG/M
3300031768\|Ga0318509_10280872	All Organisms → cellular organisms → Bacteria → Proteobacteria	931	Open in IMG/M
3300031892\|Ga0310893_10071162	All Organisms → cellular organisms → Bacteria	1212	Open in IMG/M
3300031893\|Ga0318536_10501148	Not Available	610	Open in IMG/M
3300031910\|Ga0306923_10202190	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2271	Open in IMG/M
3300032035\|Ga0310911_10681726	Not Available	595	Open in IMG/M
3300032042\|Ga0318545_10209755	All Organisms → cellular organisms → Bacteria	698	Open in IMG/M
3300033550\|Ga0247829_11358692	Not Available	587	Open in IMG/M
3300034150\|Ga0364933_173231	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	562	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	76.79%
Host-Associated	Host-Associated	22.32%
Engineered	Engineered	0.89%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	68.75%
Plants	Host-Associated → Plants	22.32%
Aquatic	Environmental → Aquatic	8.04%
Modeled	Engineered → Modeled	0.89%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	66.96%
Rhizosphere	Host-Associated → Plants → Rhizosphere	11.61%
Rhizoplane	Host-Associated → Plants → Rhizoplane	9.82%
Sediment	Environmental → Aquatic → Sediment	7.14%
Freshwater	Environmental → Aquatic → Freshwater	0.89%
Rock-Dwelling (Subaerial Biofilms)	Environmental → Terrestrial → Rock-Dwelling (Subaerial Biofilms)	0.89%
Floodplain	Environmental → Terrestrial → Floodplain	0.89%
Roots	Host-Associated → Plants → Roots	0.89%
Simulated Communities (Sequence Read Mixture)	Engineered → Modeled → Simulated Communities (Sequence Read Mixture)	0.89%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	54.46%
Loam	Environmental → Terrestrial → Soil → Loam	12.50%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	7.14%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	7.14%
Soil	Host-Associated → Plants → Rhizosphere → Soil	6.25%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	5.36%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	2.68%
Sediment	Environmental → Aquatic → Freshwater → Sediment	0.89%
Unclassified	Environmental → Terrestrial → Rock-Dwelling (Subaerial Biofilms) → Unclassified	0.89%
Sediment	Environmental → Terrestrial → Floodplain → Sediment	0.89%
Bulk Soil	Host-Associated → Plants → Roots → Bulk Soil	0.89%
Unclassified	Engineered → Modeled → Simulated Communities (Sequence Read Mixture) → Unclassified	0.89%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	43.75%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	8.04%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	7.14%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	7.14%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	6.25%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	5.36%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	5.36%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	4.46%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	2.68%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	2.68%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	1.79%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	0.89%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	0.89%
Unclassified	Environmental → Terrestrial → Rock-Dwelling (Subaerial Biofilms) → Unclassified → Unclassified	0.89%
Unclassified	Environmental → Terrestrial → Floodplain → Sediment → Unclassified	0.89%
Unclassified	Host-Associated → Plants → Roots → Bulk Soil → Unclassified	0.89%
Unclassified	Engineered → Modeled → Simulated Communities (Sequence Read Mixture) → Unclassified → Unclassified	0.89%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	25.89%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	7.14%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	5.36%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	5.36%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	5.36%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	4.46%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	4.46%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	3.57%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	3.57%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	3.57%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	2.68%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	2.68%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	2.68%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	2.68%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	2.68%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	1.79%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	1.79%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	0.89%
Unplanted Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Unplanted Soil	0.89%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Switchgrass Rhizosphere	0.89%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	0.89%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	0.89%
Exposed Rock	Environmental → Terrestrial → Rock-Dwelling (Subaerial Biofilms) → Unclassified → Unclassified → Exposed Rock	0.89%
Sediment	Environmental → Terrestrial → Floodplain → Sediment → Unclassified → Sediment	0.89%
Tabebuia Heterophylla Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere	0.89%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	0.89%
Corn, Switchgrass And Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	0.89%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.89%
Populus Endosphere	Host-Associated → Plants → Roots → Bulk Soil → Unclassified → Populus Endosphere	0.89%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.89%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.89%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	0.89%
Simulated	Engineered → Modeled → Simulated Communities (Sequence Read Mixture) → Unclassified → Unclassified → Simulated	0.89%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2166559005	Simulated microbial communities from Lyon, France	Engineered	Open in IMG/M
3300000550	Amended soil microbial communities from Kansas Great Prairies, USA - BrdU amended with acetate total DNA F2.4 TB clc assemly	Environmental	Open in IMG/M
3300001305	Grasslands soil microbial communities from Hopland, California, USA	Environmental	Open in IMG/M
3300001977	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M5	Host-Associated	Open in IMG/M
3300002067	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C1	Host-Associated	Open in IMG/M
3300002568	Grasslands soil microbial communities from Hopland, California, USA - 2	Environmental	Open in IMG/M
3300005146	Soil and rhizosphere microbial communities from Laval, Canada - mgHAB	Environmental	Open in IMG/M
3300005147	Soil and rhizosphere microbial communities from Laval, Canada - mgLMC	Environmental	Open in IMG/M
3300005294	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 Bulk Soil	Environmental	Open in IMG/M
3300005328	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG	Host-Associated	Open in IMG/M
3300005331	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG	Host-Associated	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005338	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2	Host-Associated	Open in IMG/M
3300005341	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-1 metaG	Environmental	Open in IMG/M
3300005343	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG	Environmental	Open in IMG/M
3300005406	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-1 metaG	Environmental	Open in IMG/M
3300005539	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2	Host-Associated	Open in IMG/M
3300005577	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2	Host-Associated	Open in IMG/M
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300005937	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1	Host-Associated	Open in IMG/M
3300006353	Populus root and rhizosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5	Host-Associated	Open in IMG/M
3300006603	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtHMC (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006791	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_102	Environmental	Open in IMG/M
3300006904	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD3	Host-Associated	Open in IMG/M
3300009011	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-4 metaG	Host-Associated	Open in IMG/M
3300009100	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2	Host-Associated	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300009156	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)	Host-Associated	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010373	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-4	Environmental	Open in IMG/M
3300010396	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-2	Environmental	Open in IMG/M
3300011119	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG	Host-Associated	Open in IMG/M
3300012199	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_40_16 metaG	Environmental	Open in IMG/M
3300012205	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaG	Environmental	Open in IMG/M
3300012357	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_60_16 metaG	Environmental	Open in IMG/M
3300012489	Unplanted soil (control) microbial communities from North Carolina - M.Soil.5.yng.040610	Environmental	Open in IMG/M
3300012892	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S209-509C-1	Environmental	Open in IMG/M
3300012955	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_216_MG	Environmental	Open in IMG/M
3300012957	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_207_MG	Environmental	Open in IMG/M
3300012958	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_221_MG	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300012989	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_237_MG	Environmental	Open in IMG/M
3300015200	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S209-509C-1 (version 2)	Environmental	Open in IMG/M
3300015245	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300016319	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H	Environmental	Open in IMG/M
3300016357	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000	Environmental	Open in IMG/M
3300017792	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG	Host-Associated	Open in IMG/M
3300018053	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_60_b1	Environmental	Open in IMG/M
3300018055	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_90_coex	Environmental	Open in IMG/M
3300018067	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_5_coex	Environmental	Open in IMG/M
3300018071	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_30_b1	Environmental	Open in IMG/M
3300018072	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_30_b2	Environmental	Open in IMG/M
3300018081	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_30_b1	Environmental	Open in IMG/M
3300018082	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_170_b2	Environmental	Open in IMG/M
3300018429	Populus adjacent soil microbial communities from riparian zone of Shoshone River, Wyoming, USA - 504 T	Environmental	Open in IMG/M
3300019356	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S073-202C-2 (version 2)	Environmental	Open in IMG/M
3300019872	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H1a1	Environmental	Open in IMG/M
3300019875	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U3s2	Environmental	Open in IMG/M
3300019877	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H2m1	Environmental	Open in IMG/M
3300020004	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H1a2	Environmental	Open in IMG/M
3300020006	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1m2	Environmental	Open in IMG/M
3300020016	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L3m1	Environmental	Open in IMG/M
3300020199	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300021080	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_60_coex redo	Environmental	Open in IMG/M
3300021362	Barbacenia macrantha exposed rock microbial communities from rupestrian grasslands, the National Park of Serra do Cipo, Brazil - ER_R09	Environmental	Open in IMG/M
3300025885	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025906	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025931	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025937	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025949	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026857	Soil and rhizosphere microbial communities from Laval, Canada - mgLMB (SPAdes)	Environmental	Open in IMG/M
3300026891	Soil and rhizosphere microbial communities from Laval, Canada - mgLPB (SPAdes)	Environmental	Open in IMG/M
3300027560	Soil and rhizosphere microbial communities from Laval, Canada - mgLPC (SPAdes)	Environmental	Open in IMG/M
3300028379	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300028719	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_182	Environmental	Open in IMG/M
3300028754	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_157	Environmental	Open in IMG/M
3300028796	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_141	Environmental	Open in IMG/M
3300028810	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_151	Environmental	Open in IMG/M
3300028819	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_153	Environmental	Open in IMG/M
3300028884	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_195	Environmental	Open in IMG/M
3300028885	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_185	Environmental	Open in IMG/M
3300030844	Forest soil microbial communities from France for metatranscriptomics studies - Site 11 - Champenoux / Amance forest - FA11 EcM (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300030987	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_144 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300030990	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_149 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031082	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_193 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031095	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_158 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031096	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_194 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031184	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 13_S	Environmental	Open in IMG/M
3300031422	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_181 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031680	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f22	Environmental	Open in IMG/M
3300031768	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f22	Environmental	Open in IMG/M
3300031892	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C0D2	Environmental	Open in IMG/M
3300031893	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f28	Environmental	Open in IMG/M
3300031910	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)	Environmental	Open in IMG/M
3300032035	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF170	Environmental	Open in IMG/M
3300032042	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f26	Environmental	Open in IMG/M
3300033550	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day4	Environmental	Open in IMG/M
3300034150	Sediment microbial communities from East River floodplain, Colorado, United States - 25_j17	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
cont_0091.00006630	2166559005	Simulated	IGFLNGGSSWEYAQMAATFRKGFGETGLLIVVLALVKPLSPPGDLSGQLICGPIEA
F24TB_116324552	3300000550	Soil	IGFLNGGSSWEYAQMAAAFRKGLGETGLLIVVLALVKPLSPPGDLSGQLICGPIEA*
C688J14111_100893861	3300001305	Soil	GSSWEYAQMAATFRKGFGETGLLIVVLALVKPLSPPGDLSGQLICGPIEA*
JGI24746J21847_10039573	3300001977	Corn, Switchgrass And Miscanthus Rhizosphere	MIGFLNGGSSWEYAQMAATFRKGFGETXLLIVVLALVKPLSPPGDLSGQLICGPIEA*
JGI24735J21928_102027791	3300002067	Corn Rhizosphere	TFRKGFGETSLLIVVLALVKPLSPPGDLSGQLICGPIEA*
C688J35102_1205412374	3300002568	Soil	MIGFLNGGSSWEYAQMAATFRKGFGETSLLIVVLALVKPLSPPGDLSGQLICGPIE
Ga0066817_10332042	3300005146	Soil	GFLNGGSSWEYAQMAATFRKGFGETGLLIVVLALVKPLSPPGDLSGQLICGPIEA*
Ga0066821_10217812	3300005147	Soil	MIGFLNGGSSWEYAQMAATFRKGFGETSLLIVVLALVKPLSPPGDLSGQLICGPIEA*
Ga0065705_106772332	3300005294	Switchgrass Rhizosphere	IGFLNGGSSWEYAQMAATFRKGFGETGLLIVVLALVKPLSPPGDLSGQLICGPIEA*
Ga0070676_100165911	3300005328	Miscanthus Rhizosphere	SSWEYAQMAATFRKGFGETGLLIVVLALVKPLSPPGDLSGQLICGPIEA*
Ga0070676_105134921	3300005328	Miscanthus Rhizosphere	MIGFLNGGSSWEYAQMAATFRKGFGETGLLIVVLALVKPLSPPGDLSG
Ga0070670_1002304831	3300005331	Switchgrass Rhizosphere	MAQTVATFREDLGEAGLLIVALASVKSLSPPRDLSGQFICGPIEA*
Ga0066388_1001960124	3300005332	Tropical Forest Soil	MIGFLNGGSSWEYAKMAAFRKGLGQTGSLIVVLALMKPLSPPDDLSGQLICGPIEA*
Ga0066388_1022185023	3300005332	Tropical Forest Soil	MRMVAAFRKGLAETGLLIVVLALVKPLSPQGDLSDQLICGPIEA*
Ga0066388_1029570392	3300005332	Tropical Forest Soil	MAAAFRKGLGETGLLMVVLALVKPLSPPGDLSGQLICGPIEA*
Ga0068868_1014736031	3300005338	Miscanthus Rhizosphere	MAATFRKGFGETGLLIVVLALVKPLSPPGDLSGQLICGPIEA
Ga0070691_101443592	3300005341	Corn, Switchgrass And Miscanthus Rhizosphere	MPMIGFLNGGSSWEYAQMAATFRKGFGETSLLIVVLALVKPLSPPGDLSGQLICGPIEA*
Ga0070687_1007760751	3300005343	Switchgrass Rhizosphere	ELDVPAYIYLPMIGFLNGGSSWEYAQMAATFRKGFGETGLLIVVLALVKPLSPPGDLSGQLICGPIEA*
Ga0070703_102399802	3300005406	Corn, Switchgrass And Miscanthus Rhizosphere	MIGFLNGGSSWEYAQMAATFRKGFGETGLLIVVLALVKPLSPPGDLSGQLICGPIEA*
Ga0068853_1000256121	3300005539	Corn Rhizosphere	PMIGFLNGGSSWEYAQMAATFRKGFGETGLLIVVLALVKPLSPPGDLSGQLICGPIEA*
Ga0068857_1011491721	3300005577	Corn Rhizosphere	MRRWRSRLRPARKHTAMPMIGFLNGGSSWEYAQMAATFRKGFGETGLLIVVLALVKPLSPPGDLSGQLICGPIEA*
Ga0066905_1022952651	3300005713	Tropical Forest Soil	MPMIGFLNGGSSWEYAQMAATFRKGFGETGLLIVVLALVKPLSPPGDLSGQLICGPIEA*
Ga0066903_1028841742	3300005764	Tropical Forest Soil	MAAAFRKGRGETGLLIVVLALVKPLSPPGDLSGQLICGPIEA*
Ga0066903_1068595982	3300005764	Tropical Forest Soil	MPVIGFLNGGSSWEYAQMAAAFRKGLGETGLLIVVLGLVKPLSPPDDLSGQLICGPIEASLSLVLGQV*
Ga0081455_102107732	3300005937	Tabebuia Heterophylla Rhizosphere	MAATFRKGIGETGLLIVVLALVKPLSPPGDLSGQLICGPIEA*
Ga0075370_107384702	3300006353	Populus Endosphere	QMAATFRNGLGETGYSIVVLALVKPLSPPNDLSGQLIRGPIEA*
Ga0074064_118086601	3300006603	Soil	RRLLRRGHLGFLNGGSSWEYAQMAATFRKGFGETGLLIVVLALVKPLSPPGDLSGQLICGPIEA*
Ga0066653_103351933	3300006791	Soil	HERGRPVISAMRMIGFLNGGSSWEYAQMAATFAKASAKPAYSSLCFALVKPLSPPDDLSGQLICGPIKA*
Ga0075424_1022060371	3300006904	Populus Rhizosphere	MSAAFRKARGETGLLIVVLGLVQPLSAAPPDDLSGQLICGPIEA*
Ga0105251_102936631	3300009011	Switchgrass Rhizosphere	RWRPARSTRQCPMIGFLNGGSSWEYAQMAATFRKGFGETGLLIVVLALVKPLSPPGDLSGQLICGPIEA*
Ga0075418_104756702	3300009100	Populus Rhizosphere	MPMIGFLNGGSSWEYAQMAATFRKGLGETGLLIVVLALVKPLSPPGDLSGQLICGPIEA*
Ga0114129_113677902	3300009147	Populus Rhizosphere	EYAQMAATFRKGLGETGLLIVVLALVKPLSPPGDLSGQLICGPIEA*
Ga0111538_138054791	3300009156	Populus Rhizosphere	MAATFRKGLGETGLLIVVLALVKPLSPPGDLSGQLICGPIEA*
Ga0126384_122978151	3300010046	Tropical Forest Soil	MPMIGFLNGGSSCEYAQMAATFRKGFGETGLLIALVKPLSPAGDLSGQLICGPIEA*
Ga0126373_128815111	3300010048	Tropical Forest Soil	MPMIGFLNGGSSWEYAQMAAAFRKGLGETGLLIVVLALVKPLSPPGDLSGQLICGPIEA*
Ga0126376_109296281	3300010359	Tropical Forest Soil	MSLATFRKGFGETGLLIVVLALVKPLSPPGDLSGQLICGPIEA*
Ga0134128_100289629	3300010373	Terrestrial Soil	MIGFLNGGSSWEYAQMAATFRKGFGETSLLIVVLALVKPLSPPGDSSGQLICGPIEA*
Ga0134126_122075031	3300010396	Terrestrial Soil	CGGGWRSRWRPARSTRQCPMIGFLNGGSSWEYAQMAATFRKGFGETGLLIVVLALVKPLSPPGDLSGQLICGPIEA*
Ga0105246_100134601	3300011119	Miscanthus Rhizosphere	ATFRKGFGETGLLIVVLALVKPLSPPGDLSGQLICSPIEA*
Ga0137383_109760401	3300012199	Vadose Zone Soil	RPSHTHSRRGAVPVIGFLKGGSSWEYAQMAAAFRKGLGETGLLIVVLALVKPLSPPGDLSGQLICGPIEA*
Ga0137362_110826901	3300012205	Vadose Zone Soil	AAFRKGLGETGLLIVVLASVKPLSPPGDLSGQLICGPIEA*
Ga0137384_115374191	3300012357	Vadose Zone Soil	LKGGSSWEYAQMAAAFLKGLGETGLLIVLLGLVKPLSPPGDLSGQLICGPIEA*
Ga0157349_10141641	3300012489	Unplanted Soil	QHKAMPMIAFLGGGSSWEYAQMAATFRKGLGQTGLLLLIVVLALVKPLSPPGDLSGQLICGPIEA*
Ga0157294_101404331	3300012892	Soil	MAATFRKGFGETSLLIVVLALVKPLSPPGDLSGQLICGPIEA*
Ga0164298_100052157	3300012955	Soil	SSWEYAQMAATFRKGFGETGLLIVVLALVKPLSPPGDLSGQLICSPIEA*
Ga0164303_111551512	3300012957	Soil	MIGFLNGGSSWEYAQMAATFRKGFGETSLLIVVLALVKPLSPPGDLSGQ
Ga0164299_100242971	3300012958	Soil	MIGFLNGGSSWEYAQMAATFRKGFGETSLLIVVLALVKPLSPPGDLSGQLICGPI
Ga0126369_104986891	3300012971	Tropical Forest Soil	MRMVAAFRKGLGETGLLIVVLALVKPLSPQGDLSDQLICGPIEA*
Ga0126369_128097051	3300012971	Tropical Forest Soil	MPMIGFLNGGSSWEYAQMAAAFSKGLGETGLLIVVLALVKPLSPPGDLSG
Ga0164305_100152567	3300012989	Soil	MIGFLNGGSSWEYSQMAATFRKGFGETSLLIVVLALVKPLSPPGDLSGQLICGPIEA*
Ga0173480_105543791	3300015200	Soil	MPMIGFLNGGSSGEYAQMAATFRKGFGETSLLIVVLALVKPLSPPGDLSGQLICGPIEA*
Ga0137409_110028821	3300015245	Vadose Zone Soil	AQHTAMPMIGFLNGGSSWEYAQMGATFRKGFGETGLLIVVLALVKPLSPPGDLSGQLICGPIEA*
Ga0132258_107185201	3300015371	Arabidopsis Rhizosphere	MAATFRKGLGETGLLIVVLALVKPLSPPGDLSGQLICGPIE
Ga0132256_1003692882	3300015372	Arabidopsis Rhizosphere	VPVIGFLKGGSSWEYEQMAAAFRKGLGETGLLIVVLGLVKPLSAAPPDDLSGQPICGPIEA*
Ga0132255_1044726971	3300015374	Arabidopsis Rhizosphere	MPMIGFLNGGSSWEYAQMAATFRKGFGETDLLIVVLALMKPLSPPGDLSGQLICGPIEA*
Ga0132255_1053971561	3300015374	Arabidopsis Rhizosphere	MAATFRKGLGETGLLIVVLALVKPLSPPGDLSGQLIC
Ga0182033_105389731	3300016319	Soil	EHPGSQMAAAFRKGLGETGLLIVVLALVKPLSPPGDLSGQLICGPIEA
Ga0182032_119465331	3300016357	Soil	MPVIGFLNGGSSWEYAQMAATFRKGLGKTGLLIVVLALVKSLSPPGDLSGQLICGPIEA
Ga0163161_107296492	3300017792	Switchgrass Rhizosphere	MIGFLNGGSSWEYAQMAATFRKGFGETGLLIVVLALVKPLSPPGDLSGQLICGPIEA
Ga0184626_102169402	3300018053	Groundwater Sediment	HARRLLRRGHLGFLNGGSSWEYAQMAATFRKGFGETGLLIVVLALVKPLSPPGDLSGQLICGPIEA
Ga0184616_100502302	3300018055	Groundwater Sediment	MNTIYLPMIGFLNGGSSWEYAQMAATFRKGFGETGLLIVVLALVKPLSPPGDLSGQLICGPIEA
Ga0184611_10052861	3300018067	Groundwater Sediment	SSWEYAQMAATFRKGFGETGLLIVVLALVKPLSPPGDLSGQLICGPIEA
Ga0184618_102290912	3300018071	Groundwater Sediment	STRSRSSFGPRGIAPTLGSSWEYAQMAATFRKGFGETGLLIVVLALVKPLSPPGDLSGQLICGPIEA
Ga0184635_100069431	3300018072	Groundwater Sediment	LRPARHTAMPMIGFLNGGSSWEYAQVAATFRKGFGETGLLIVVLALVKPLSPPGDLSGQLICGPIEA
Ga0184625_100318434	3300018081	Groundwater Sediment	EYAQMAATFRKGFGETGLLIVVLALVKPLSPPGDLSGQLICGPIEA
Ga0184625_100885031	3300018081	Groundwater Sediment	MAATFRKGFGETGLLIVVLALVKPLSPPGDLSGQLI
Ga0184639_102399572	3300018082	Groundwater Sediment	MPMIGFLNGGSSWEYAQMAATFRKGFGETGLLIVVLALVKPLSPPGDLSGQLICGPIEA
Ga0190272_123717932	3300018429	Soil	VAARAQQSAMPMVGFLNGGSSWEYAQMAATFRKGFGETGLLIVVLALVKPLSPPGDLSGQLICGPIEA
Ga0173481_105587512	3300019356	Soil	MIGFLNGGSSWEYAQMAATFRKGFGETSLLIVVLALVKPLSPPGDLSGQLICGPIEA
Ga0193754_10255881	3300019872	Soil	RSRSSFGPRGWEYAQMAATFRKGFGETGLLIVVLALVKPLSPPGDLSGQLICGPIEA
Ga0193701_10125371	3300019875	Soil	APTLGSSWEYAQMAATFRKGFGETGLLIVVLALVKPLSPPGDLSGQLICGPIEA
Ga0193722_10858462	3300019877	Soil	DVPAYIYLPMIGFLNGGSSWEYAQMAATFRKGFGETGLLIVVLALVKPLSPPGDLSGQLICGPIEA
Ga0193755_12090782	3300020004	Soil	LLRRGHLGFLNGGSSWEYAQMAATFRKGFGETGLLIVVLALVKPLSPPGDLSGQLICGPIEA
Ga0193735_11365811	3300020006	Soil	FLNGGSSWEYAQMAATFRKGFGETGLLIVVLALVKPLSPPGDLSGQLICGPIEA
Ga0193696_10993101	3300020016	Soil	LRRGHLGFLNGGSSWEYAQMAATFRKGFGETGLLIVVLALVKPLSPPGDLSGQLICGPIE
Ga0179592_103790762	3300020199	Vadose Zone Soil	MAATFRKGFGETGLLIVVLALVKPLSPPGDLSGQLICGPIE
Ga0210382_103059521	3300021080	Groundwater Sediment	LGSSWEYAQMAATFRKGFGETGLLIVVLALVKPLSPPGDLSGQLICGPIEA
Ga0213882_102483181	3300021362	Exposed Rock	TMPVIGFLNGGSSWEYAQMAAAFRKGLGETGLRIVVLALVKPLSPPDDLSGQLICGPIEA
Ga0207653_104519051	3300025885	Corn, Switchgrass And Miscanthus Rhizosphere	VPAYIYLPMIGFLNGGSSWEYAQMAATFRKGFGETSLLIVVLALVKPLSPPNDLSGQLICGPIEA
Ga0207699_103176643	3300025906	Corn, Switchgrass And Miscanthus Rhizosphere	MIGFLNGGSSWEYAQMAATFRKGFGETDLLIVVLALVKPLSPPGDLSGQLICGPIEA
Ga0207644_114404813	3300025931	Switchgrass Rhizosphere	MIGFLNGGSSWEYAQMAATFRKGFGETGLLIVVLALVKPLSPPGDLSGQL
Ga0207669_116433031	3300025937	Miscanthus Rhizosphere	MIGFLNGGSSWEYAQMAATFRKGFGETSLLIVVLALVKPLSPPGDLSGQLI
Ga0207667_110154221	3300025949	Corn Rhizosphere	ARAHTAMPMIGFLNGGSSWEYAQMAATFRKGFGETGLLIVVLALVKPLSPPGDLSGQLICGPIEA
Ga0208893_10011942	3300026857	Soil	VFWLVRWHARWRPARSTRQCPMIGFLNGGSSWEYAQMAATFRKGFGETSLLIVVLALVKPLSPPGDLSGQLICGPIEA
Ga0208889_10106431	3300026891	Soil	EVVNELDVPAYIYLPMIGFLNGGSSWEYAQMAATFRKGFGETGLLIVVLALVKPLSPPGDLSGQLICGPIEA
Ga0207981_10044731	3300027560	Soil	GPARKHTAMPMIGFLNGGSSWEYAQMAATFRKGFGETGLLIVVLALVKPLSPPGDLSGQLICGPIEA
Ga0268266_100352075	3300028379	Switchgrass Rhizosphere	SRWRPARSTRQCPMIGFLNGGSSWEYAQMAATFRKGFGETGLLIVVLALVKPLSPPGDLSGQLICGPIEA
Ga0307301_101798291	3300028719	Soil	HTAMPMIGFLNGGSSWEYAQMAATFRKGFGETGLLIVVLALVKPLSPPGDLSGQLICGPIEA
Ga0307301_102789361	3300028719	Soil	MAATFRKGFGETGLLIVVLALVKPLSPPGDLSGQL
Ga0307297_100046325	3300028754	Soil	NGGSSWEYAQMAATFRKGFGETGLLIVVLALVKPLSPPGDLSGQLICGPIEA
Ga0307287_100040636	3300028796	Soil	IAPTLGSSWEYAQMAATFRKGFGETGLLIVVLALVKPLSPPGDLSGQLICGPIEA
Ga0307294_101873321	3300028810	Soil	CYGGFGHARRLLRRGHLGFLNGGSSWEYAQMAATFRKGFGETGLLIVVLALVKPLSPPDDLSGQLICGPIEA
Ga0307296_100062458	3300028819	Soil	GSSWEYAQMAATFRKGFGETGLLIVVLALVKPLSPPGDLSGQLICGPIEA
Ga0307308_104855872	3300028884	Soil	GFLNGGSSWEYAQMAATFRKGFGETGLLIVVLALVKPLSPPGDLSGQLICGPIEA
Ga0307304_103343582	3300028885	Soil	HLLPMIGFLNGGSSWEYAQMAATFRKGFGETGLLIVVLALVKPLSPPGDLSGQLICGPIE
Ga0075377_114782561	3300030844	Soil	RWRPARSTRQCPMIGFLNGGSSWEYAQMAATFRKGFGETGLLIVVLALVKPLSPPGDLSGQLICGPIEA
Ga0308155_10117071	3300030987	Soil	GGFGHARRLLRRGHLGFLNGGSSWEYAQMAATFRKGFGETGLLIVVLALVKPLSPPGDLSGQLICGPIEA
Ga0308178_10784641	3300030990	Soil	MPMIGLLNGGSSWEYAQMAATFRKGFGETGLLIVVLALVKPLSPPGDLSGQLICGPIEA
Ga0308192_10444121	3300031082	Soil	INELDVPAYIYLPMIGFLNGGSSWEYAQMAATFRKGFGETGLLIVVLALVKPLSPPGDLSGQLICGPIEA
Ga0308184_10469702	3300031095	Soil	FGPRGIAPTLGSSWEYAQMAATFRKGFGETGLLIVVLALVKPLSPPGDLSGQLICGPIEA
Ga0308193_10849112	3300031096	Soil	FGHARRLLRRGHLGFLNGGSSWEYAQMAATFRKGFGETGLLIVVLALVKPLSPPGDLSGQLICGPIEA
Ga0307499_102667571	3300031184	Soil	DMRRWRSRLRPARKHTAMPMIGFLNGGSSWEYAQMAATFRKGFGETGLLIVVLALVKPLSPPGDLSGQLICGPIEA
Ga0308186_10403442	3300031422	Soil	AMPMIGFLNGGSSWEYAQMAATFRKGFGETGLLIVVLALVKPLSPPGDLSGQLICGPIEA
Ga0318574_105648502	3300031680	Soil	MAAAFRKGLGETGLLIVVLALLKTLSPPGDLSGQLICGPIET
Ga0318509_102808721	3300031768	Soil	MAAAFRKGLGETGLLIVVLALLKPLSPPGDLSGQLICGPI
Ga0310893_100711623	3300031892	Soil	LNGGSSWEYAQMAATFRKGFGETGLLIVVLALVKPLSPPGDLSGQLICGPIEA
Ga0318536_105011481	3300031893	Soil	MAAAFRKGLGETGLLIVVLALLKPLSPPGDLSGQLICGPIET
Ga0306923_102021904	3300031910	Soil	EHPGSQMAAAFRKGLGETGLLIVVLALVKPLSPSGDLSGQLICGPIEA
Ga0310911_106817262	3300032035	Soil	LSWEYAQMAAAFRKGLGETGLLIVVLALVKPLSPPGDLSGQLICGPIEA
Ga0318545_102097551	3300032042	Soil	MAAAFRKGLGETGLLIVVLALVKPLSPPGDLSGQLICGPIEA
Ga0247829_113586922	3300033550	Soil	SWEYAQMAATFRKGFGETGLLIVVLALVKPLSPPGDLSGQLICGPIEA
Ga0364933_173231_1_171	3300034150	Sediment	MNTIYLPMIGFLNGGSSWEYAQMAATFRKGFGETGLLIVVLALVKPLSPPGDLSGQL

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F084326

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences

Hidden Markov Model


Click on a Sequence Logo column to get its information.
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