NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300026891

3300026891: Soil and rhizosphere microbial communities from Laval, Canada - mgLPB (SPAdes)



Overview

Basic Information
IMG/M Taxon OID3300026891 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0099864 | Gp0111012 | Ga0208889
Sample NameSoil and rhizosphere microbial communities from Laval, Canada - mgLPB (SPAdes)
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?Y
Use PolicyOpen

Dataset Contents
Total Genome Size52137121
Sequencing Scaffolds30
Novel Protein Genes32
Associated Families32

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium1
All Organisms → cellular organisms → Bacteria5
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium3
All Organisms → cellular organisms → Archaea3
Not Available13
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group → Rhizobium → Rhizobium etli → Rhizobium etli CNPAF5121
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameSoil And Rhizosphere Microbial Communities From Centre Inrs-Institut Armand-Frappier, Laval, Canada
TypeEnvironmental
TaxonomyEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil And Rhizosphere Microbial Communities From Centre Inrs-Institut Armand-Frappier, Laval, Canada

Alternative Ecosystem Assignments
Environment Ontology (ENVO)terrestrial biome → rhizosphere → soil
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Soil (non-saline)

Location Information
LocationLaval, Canada
CoordinatesLat. (o)45.54Long. (o)-73.72Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000478Metagenome / Metatranscriptome1096Y
F001436Metagenome / Metatranscriptome695Y
F001440Metagenome / Metatranscriptome694Y
F001604Metagenome / Metatranscriptome664Y
F005950Metagenome / Metatranscriptome385Y
F006148Metagenome / Metatranscriptome380Y
F007147Metagenome / Metatranscriptome357Y
F010126Metagenome / Metatranscriptome308Y
F011453Metagenome291Y
F012136Metagenome / Metatranscriptome283Y
F016898Metagenome / Metatranscriptome244N
F020931Metagenome / Metatranscriptome221Y
F022746Metagenome / Metatranscriptome213Y
F026329Metagenome / Metatranscriptome198Y
F028011Metagenome193Y
F029148Metagenome189Y
F036354Metagenome / Metatranscriptome170Y
F042319Metagenome / Metatranscriptome158Y
F043118Metagenome / Metatranscriptome157Y
F046352Metagenome / Metatranscriptome151Y
F053116Metagenome141N
F057972Metagenome / Metatranscriptome135N
F061030Metagenome / Metatranscriptome132Y
F067850Metagenome / Metatranscriptome125Y
F067918Metagenome / Metatranscriptome125N
F069724Metagenome / Metatranscriptome123Y
F080390Metagenome / Metatranscriptome115N
F082646Metagenome / Metatranscriptome113Y
F084326Metagenome / Metatranscriptome112N
F084328Metagenome112N
F086124Metagenome / Metatranscriptome111N
F105643Metagenome100Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0208889_1002083All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium1267Open in IMG/M
Ga0208889_1002425All Organisms → cellular organisms → Bacteria1170Open in IMG/M
Ga0208889_1002884All Organisms → cellular organisms → Bacteria1071Open in IMG/M
Ga0208889_1003353All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium989Open in IMG/M
Ga0208889_1003733All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium936Open in IMG/M
Ga0208889_1004620All Organisms → cellular organisms → Archaea840Open in IMG/M
Ga0208889_1004745Not Available829Open in IMG/M
Ga0208889_1004768All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group → Rhizobium → Rhizobium etli → Rhizobium etli CNPAF512827Open in IMG/M
Ga0208889_1005422All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium776Open in IMG/M
Ga0208889_1005635All Organisms → cellular organisms → Bacteria760Open in IMG/M
Ga0208889_1005733All Organisms → cellular organisms → Bacteria753Open in IMG/M
Ga0208889_1006165Not Available728Open in IMG/M
Ga0208889_1006874All Organisms → cellular organisms → Archaea691Open in IMG/M
Ga0208889_1007982All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia646Open in IMG/M
Ga0208889_1008542All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria625Open in IMG/M
Ga0208889_1008725Not Available619Open in IMG/M
Ga0208889_1008747Not Available619Open in IMG/M
Ga0208889_1009964All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium585Open in IMG/M
Ga0208889_1010098Not Available581Open in IMG/M
Ga0208889_1010203Not Available578Open in IMG/M
Ga0208889_1010312All Organisms → cellular organisms → Archaea574Open in IMG/M
Ga0208889_1010978All Organisms → cellular organisms → Bacteria558Open in IMG/M
Ga0208889_1011632Not Available543Open in IMG/M
Ga0208889_1011655Not Available542Open in IMG/M
Ga0208889_1012641All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium521Open in IMG/M
Ga0208889_1012820Not Available518Open in IMG/M
Ga0208889_1012853Not Available518Open in IMG/M
Ga0208889_1013044Not Available514Open in IMG/M
Ga0208889_1013175Not Available512Open in IMG/M
Ga0208889_1013565Not Available505Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0208889_1002083Ga0208889_10020832F007147MVERAAKNDRVRRCLARGVVVFLWIVPLQIWALAEDDPLQKAVNYLFTGRNDPQDAPEILDRKSCVVVVSNLKFKQPIRYYLGRFRMDTAFINKTYAGSETIHSLDVKGGEVIVEYLDPGKSTVLHGHKSAQISLPGDIDQISKALELIASLCRNGKPAE
Ga0208889_1002425Ga0208889_10024253F001436VSFRDARHSDIGVVVLLCVSSIAKGVVMDTHKQDVATLIELLKMAAERWPRSEADQVSQSELLREDHSLLEMWPEACRRTGIGRREFPPGVIKLWKQRLGREN
Ga0208889_1002884Ga0208889_10028842F011453MKNRFTVAAAVVAGAGVLSACATEKSDTTRREYDRSVADYQNCIAANQMSTCEAERRIMEANKKVLQRSRPTY
Ga0208889_1003353Ga0208889_10033531F006148VAESENTFPMDIREGSSRPWNFRPSGHLVVILASDDEAQRAERALVAQGFASRDIKLYTGKQILANQEEYVSRRGVPSTIVGSVVDDVEGRALYLGYARDDRCAMWVRIPDESNVPMALRVLADHNYLHTRYYGFGKLTDYQVS
Ga0208889_1003733Ga0208889_10037332F057972MQKVRADGFDRLDPLEAARAEPTLGPLPLLEPESPHYPLAMVEWHDAWFDLDLESPDGCRQDYLVRTVGFLVSEGPRFVSLAQEILPDGEGLRAVTHIPVPIIERVIRLDRSAETFDRPASPHLPPG
Ga0208889_1004620Ga0208889_10046202F010126SNVTNRTSSDQIAYRNPQYGIFLLFPSNWTFSTSGLPEYTQIAGFYAPLQNLSDPIPARFTISVMSYQQNVSLKDFTNVTLSSLNQTNQIKILSSGATTLAGRPGYQVIFSTLPNMGNPVSFEIMHSWTAVDNKIYVFQYSVESSKFDTYLPTVKQILGSLRINGIG
Ga0208889_1004745Ga0208889_10047451F084328PSASDARPDWEAPAFTKLPIASRTGSGANVANDPARVVEPAAPGQPLSKLGFSFEMAFPMSSRSDK
Ga0208889_1004768Ga0208889_10047681F105643VFIRKLKPGERAPETTDRIYIDRLADGRISWTGSVDVGGKARLGASRVDFATIQEAETDAIAWARGQGTTELQIEGRNN
Ga0208889_1005422Ga0208889_10054222F036354VIAKRKGVAARWGLKEAWIKCASRWTRTGYKALAPDER
Ga0208889_1005635Ga0208889_10056351F016898KWLYCFACEEPFELAGSPASCGCGRSSARLDGGIVEIQGPTRALAPVETVIRLDGGKWAPLPEDVFIRRVLPRAA
Ga0208889_1005733Ga0208889_10057332F000478MRKDVREFIRRLEAVGLTVESTPGHYRVLRDGQPLRKANGMPFMLPFSPDTVRWRRAAIVELRKLGINV
Ga0208889_1006165Ga0208889_10061651F053116MNILKRNRFDRRSDSTLIVLIAISLLYIMVTITALYPFDRLQIVAAATLQENNNNTKPVFLSTISTTIATGVGATGAILTVPGYLRARKQPKFLAAYLLKIHNKHDELCRYPKLSDKSKNEYRNFLDSLRCDIIYSLKNGDINENQY
Ga0208889_1006523Ga0208889_10065231F080390MIIVLAIGMFCASIYMLLSGLTVKQREIAITLRKAKRYGTRDQREIETRRSVNDRIVGPLTQQIADITQKILPKSDPNEIHARLMAAGLSRSMSPQMYLALKGGLVATAL
Ga0208889_1006874Ga0208889_10068741F005950MTYAKQKVKVKIHRTSDYDDKYTGIKDFPDEKAMLQYGLSKVHEVIIKKYTKDDEFMATARKTRGIKFDYDMELYDYIGTDVRESKR
Ga0208889_1007982Ga0208889_10079822F001440MPNAKSIGWAIYAVGFAIWLFGYLSAGHVSVIDWPWWISSFVPNLEAELGLALMFASMIPIYWRAGRKRA
Ga0208889_1008542Ga0208889_10085421F061030EGLKLRPKREAGGTQTLDGGRVAFPKYYRREGLKFHRSHALEGYLACMRAAGRK
Ga0208889_1008725Ga0208889_10087252F022746MSQSGWYHDKAAECNRMALASTNAVIRGRYIRDRDSWQEIAARIDAAEEAEQRKE
Ga0208889_1008747Ga0208889_10087471F029148MSSLDWKEIEIVLRGKRVKGPYNVSEGLVTVAAWSGTNTAPLGILPAERLAKKCCCAI
Ga0208889_1009964Ga0208889_10099642F069724MVDVFMALLSFRGFDTPSLPAQGEQRRSTYFNIGRDIP
Ga0208889_1010098Ga0208889_10100981F067850MVQLQLLDLMISRECGAVPMDAATRADLIDLTARVIAAVFHEEG
Ga0208889_1010203Ga0208889_10102031F086124VIGSERLVAYRTGRPDPSFLLQSDGKTHMTDIIPTAAEAKDLADDCCEALAELLSRPTTTARRPITERVLAEMQKTLSDESWAEAMGSPIKTYLGFNSIHLCMRFLRSNGHLAQAARIEAALEAAAGRLSETRTMTLIPRSTD
Ga0208889_1010312Ga0208889_10103121F020931FGFIKRKTSGFFQDRKSTANSAQSVTDKELLEIIETEKKILEKDLSTDLEPIRNSALHCLDNLKESAEELEEQEIKVENPQFESLINTSKKILITSIKKESFIGSSEIKNYEDAVKFKNNLELLVNRFGQVGDSHNKILNEFMRRQVNKLKSEFDNLSSLLKEVTKVLSVKESQINNCVACRDDLILLKEK
Ga0208889_1010643Ga0208889_10106431F084326EVVNELDVPAYIYLPMIGFLNGGSSWEYAQMAATFRKGFGETGLLIVVLALVKPLSPPGDLSGQLICGPIEA
Ga0208889_1010978Ga0208889_10109781F028011ISGNSAKTNHLLEKISHMDSKTYDRLLDLQKELQKPEVAQWYQTELLFTSADFNTIKNNVDQAVAILSGRKGNGLFLDANVSAAIGAAGNQAQPTETTPGSTNVAGTPSTVITGSVGRWEKGAGNLPADVETVQSLLQTAAQKLQAPQLDPKGVDGKIAQPPRKSNTVAAIEAFQSRFNISVDGL
Ga0208889_1011632Ga0208889_10116321F043118MEQYDDTFETVDAPPTIKEIEKRLRKLGCTKEQVSRHLDQVTKSRIAPVSEKRNKNRPHKIDWP
Ga0208889_1011655Ga0208889_10116551F046352VLLGVIAYAALVNRPAENAFASGANDACAAVQRSEGGVDLSRTPTRGELQRALNVRLQALGAIRALEQPEQDAVMASTFLSAFAETNASITRLEKAIGGGDHEVSRALRSLRGDVRHERELAVRAGIAGCGGLAIR
Ga0208889_1012641Ga0208889_10126412F082646MVRVGYENGGAFSFGFLVVNDGPLPVKIQRIEVTGQSDLLVTVGLETAANRYAGSLGQGDPSLDKFLPFTLAGGDRRWIAVRTRFGNCGRFAAGASETYTRFKVTYSVLGFTKH
Ga0208889_1012820Ga0208889_10128201F042319MTDITYQTATAGIASPSALLSRIAAWCTHFAEGIREGREIAARYHALAQLSTPELARHGLNRQMIARAALTGF
Ga0208889_1012853Ga0208889_10128532F001604MTDILDVARSSREEPKLIVRKAPHAAVWSVWAVLEGIPPEEIFEGSSEEEASSWINTGGQAWLKERRQKRNT
Ga0208889_1013044Ga0208889_10130442F026329MDSALLQNLMAGAGSSSQFIGGLIVALLYVVIGLLGAIGSIVVFRRIFQGRWEQIFWASFLVVI
Ga0208889_1013175Ga0208889_10131751F067918MSEQTWSQDRIGRGAAAVLLAAAMLIPTAAGAQPIEGSSTRGAAHQVVSFGIPDEGPRVEELDPTDDGFIIIECIGFAGAALNAREPQGGFWMRTVAVPQFPLGPSACSPQEHK
Ga0208889_1013565Ga0208889_10135652F012136MKTITLLAAIAGVIIGAAGPASAQGIYLDFGNNPGPRYRDYDGPRYRDYDGPRYRDRQRYGERGERGYYPPSGRFKTFNGCQNGWTVQD
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