NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F087420

Metagenome / Metatranscriptome Family F087420

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F087420
Family Type Metagenome / Metatranscriptome
Number of Sequences 110
Average Sequence Length 76 residues
Representative Sequence MGPTLGTRAKRSTAGGAIALVLSALPHAPASAAKPPYAGCVAVTKQEYDSAKKQHMLRTRYTEYVRTGLPGRRQYWYCR
Number of Associated Samples 99
Number of Associated Scaffolds 110

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Bacteria
% of genes with valid RBS motifs 72.73 %
% of genes near scaffold ends (potentially truncated) 46.36 %
% of genes from short scaffolds (< 2000 bps) 82.73 %
Associated GOLD sequencing projects 92
AlphaFold2 3D model prediction Yes
3D model pTM-score0.40

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Bacteria (79.091 % of family members)
NCBI Taxonomy ID 2
Taxonomy All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil
(17.273 % of family members)
Environment Ontology (ENVO) Unclassified
(29.091 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Soil (non-saline)
(54.545 % of family members)


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Multiple Sequence Alignments

Select alignment to view:      

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: Yes Secondary Structure distribution: α-helix: 8.41%    β-sheet: 14.95%    Coil/Unstructured: 76.64%
Feature Viewer
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  		pTM-score: 0.40
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 110 Family Scaffolds
PF04586Peptidase_S78 46.36
PF05239PRC 3.64
PF00534Glycos_transf_1 2.73
PF04860Phage_portal 1.82
PF00083Sugar_tr 0.91
PF02735Ku 0.91
PF12277DUF3618 0.91
PF13844Glyco_transf_41 0.91
PF07332Phage_holin_3_6 0.91

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 110 Family Scaffolds
COG3740Phage head maturation proteaseMobilome: prophages, transposons [X] 46.36
COG1273Non-homologous end joining protein Ku, dsDNA break repairReplication, recombination and repair [L] 0.91

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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
All OrganismsrootAll Organisms79.09 %
UnclassifiedrootN/A20.91 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300000364|INPhiseqgaiiFebDRAFT_105286040All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → unclassified Bradyrhizobiaceae → Bradyrhizobiaceae bacterium1179Open in IMG/M
3300000953|JGI11615J12901_10120635All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium2195Open in IMG/M
3300001990|JGI24737J22298_10008481All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium3436Open in IMG/M
3300003324|soilH2_10176601All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae3468Open in IMG/M
3300003911|JGI25405J52794_10042757All Organisms → cellular organisms → Bacteria → Proteobacteria960Open in IMG/M
3300004062|Ga0055500_10062633All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → unclassified Bradyrhizobiaceae → Bradyrhizobiaceae bacterium768Open in IMG/M
3300004114|Ga0062593_100382902All Organisms → cellular organisms → Bacteria → Proteobacteria1248Open in IMG/M
3300004157|Ga0062590_101350369All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Nitrobacter → unclassified Nitrobacter → Nitrobacter sp. Nb-311A706Open in IMG/M
3300004479|Ga0062595_100131860Not Available1410Open in IMG/M
3300004479|Ga0062595_100190358All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Nitrobacter → unclassified Nitrobacter → Nitrobacter sp. Nb-311A1255Open in IMG/M
3300004479|Ga0062595_101122619All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → unclassified Bradyrhizobiaceae → Bradyrhizobiaceae bacterium690Open in IMG/M
3300005093|Ga0062594_101342507All Organisms → cellular organisms → Bacteria → Proteobacteria721Open in IMG/M
3300005146|Ga0066817_1018501All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Nitrobacter → unclassified Nitrobacter → Nitrobacter sp. Nb-311A623Open in IMG/M
3300005162|Ga0066814_10075279All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Nitrobacter → unclassified Nitrobacter → Nitrobacter sp. Nb-311A598Open in IMG/M
3300005164|Ga0066815_10025471All Organisms → cellular organisms → Bacteria → Proteobacteria856Open in IMG/M
3300005168|Ga0066809_10200126Not Available540Open in IMG/M
3300005218|Ga0068996_10010755All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → unclassified Bradyrhizobiaceae → Bradyrhizobiaceae bacterium1277Open in IMG/M
3300005293|Ga0065715_10007723All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae3111Open in IMG/M
3300005330|Ga0070690_101760508All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Nitrobacter → unclassified Nitrobacter → Nitrobacter sp. Nb-311A504Open in IMG/M
3300005331|Ga0070670_101195477All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae695Open in IMG/M
3300005332|Ga0066388_102737137All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae900Open in IMG/M
3300005332|Ga0066388_104037780All Organisms → cellular organisms → Bacteria → Proteobacteria748Open in IMG/M
3300005466|Ga0070685_10370851All Organisms → cellular organisms → Bacteria → Proteobacteria983Open in IMG/M
3300005507|Ga0074259_10115320All Organisms → cellular organisms → Bacteria → Proteobacteria923Open in IMG/M
3300005529|Ga0070741_10012091All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria15710Open in IMG/M
3300005530|Ga0070679_100518396Not Available1136Open in IMG/M
3300005577|Ga0068857_101523939All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → unclassified Bradyrhizobiaceae → Bradyrhizobiaceae bacterium652Open in IMG/M
3300005713|Ga0066905_101851609All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Nitrobacter → unclassified Nitrobacter → Nitrobacter sp. Nb-311A557Open in IMG/M
3300005937|Ga0081455_10000051All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria123542Open in IMG/M
3300006195|Ga0075366_10353375Not Available902Open in IMG/M
3300006573|Ga0074055_11870121All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae848Open in IMG/M
3300006577|Ga0074050_12057259All Organisms → cellular organisms → Bacteria → Proteobacteria802Open in IMG/M
3300006954|Ga0079219_10397581All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae912Open in IMG/M
3300007076|Ga0075435_100248430All Organisms → cellular organisms → Bacteria → Proteobacteria1514Open in IMG/M
3300009156|Ga0111538_10398085All Organisms → cellular organisms → Bacteria → Proteobacteria1744Open in IMG/M
3300010047|Ga0126382_11186782All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → unclassified Bradyrhizobiaceae → Bradyrhizobiaceae bacterium683Open in IMG/M
3300010047|Ga0126382_11658053Not Available595Open in IMG/M
3300010359|Ga0126376_10405532All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae1230Open in IMG/M
3300010359|Ga0126376_11655268Not Available674Open in IMG/M
3300010362|Ga0126377_10006286All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria8906Open in IMG/M
3300010362|Ga0126377_10006331All Organisms → cellular organisms → Bacteria → Proteobacteria8884Open in IMG/M
3300010362|Ga0126377_11224823Not Available821Open in IMG/M
3300010396|Ga0134126_12495983Not Available562Open in IMG/M
3300012497|Ga0157319_1015636All Organisms → cellular organisms → Bacteria → Proteobacteria680Open in IMG/M
3300012882|Ga0157304_1001628Not Available1857Open in IMG/M
3300012895|Ga0157309_10001767All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales3768Open in IMG/M
3300012898|Ga0157293_10007212Not Available1665Open in IMG/M
3300012899|Ga0157299_10101347Not Available745Open in IMG/M
3300012911|Ga0157301_10163738All Organisms → cellular organisms → Bacteria → Proteobacteria719Open in IMG/M
3300012943|Ga0164241_10794137Not Available689Open in IMG/M
3300012951|Ga0164300_10003617All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales4151Open in IMG/M
3300012985|Ga0164308_11693368All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Nitrobacter → unclassified Nitrobacter → Nitrobacter sp. Nb-311A586Open in IMG/M
3300015371|Ga0132258_13285963All Organisms → cellular organisms → Bacteria → Proteobacteria1113Open in IMG/M
3300015372|Ga0132256_100122828Not Available2565Open in IMG/M
3300015372|Ga0132256_101444201All Organisms → cellular organisms → Bacteria → Proteobacteria799Open in IMG/M
3300015373|Ga0132257_100687157All Organisms → cellular organisms → Bacteria → Proteobacteria1271Open in IMG/M
3300019356|Ga0173481_10001273All Organisms → cellular organisms → Bacteria → Proteobacteria6011Open in IMG/M
3300019356|Ga0173481_10009354All Organisms → cellular organisms → Bacteria → Proteobacteria2729Open in IMG/M
3300022883|Ga0247786_1104873All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Nitrobacter → unclassified Nitrobacter → Nitrobacter sp. Nb-311A613Open in IMG/M
3300022899|Ga0247795_1018980All Organisms → cellular organisms → Bacteria → Proteobacteria1107Open in IMG/M
3300023062|Ga0247791_1004960All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → unclassified Bradyrhizobiaceae → Bradyrhizobiaceae bacterium1956Open in IMG/M
3300023260|Ga0247798_1010782Not Available1084Open in IMG/M
3300024181|Ga0247693_1030180All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae747Open in IMG/M
3300025538|Ga0210132_1001853All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales2595Open in IMG/M
3300025911|Ga0207654_10792842All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → unclassified Bradyrhizobiaceae → Bradyrhizobiaceae bacterium684Open in IMG/M
3300025913|Ga0207695_11748608All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → unclassified Bradyrhizobiaceae → Bradyrhizobiaceae bacterium503Open in IMG/M
3300025914|Ga0207671_11200804All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → unclassified Bradyrhizobiaceae → Bradyrhizobiaceae bacterium593Open in IMG/M
3300025919|Ga0207657_11131025All Organisms → cellular organisms → Bacteria597Open in IMG/M
3300025920|Ga0207649_10257345All Organisms → cellular organisms → Bacteria1260Open in IMG/M
3300025921|Ga0207652_10242013All Organisms → cellular organisms → Bacteria → Proteobacteria1627Open in IMG/M
3300025930|Ga0207701_11127854Not Available649Open in IMG/M
3300026053|Ga0208422_1033471All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → unclassified Bradyrhizobiaceae → Bradyrhizobiaceae bacterium619Open in IMG/M
3300026452|Ga0256821_1001657All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales1887Open in IMG/M
3300026725|Ga0207474_102062Not Available642Open in IMG/M
3300026745|Ga0207576_101734Not Available742Open in IMG/M
3300026853|Ga0207443_1001653Not Available1011Open in IMG/M
3300026861|Ga0207503_1008627All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Nitrobacter → unclassified Nitrobacter → Nitrobacter sp. Nb-311A613Open in IMG/M
3300026939|Ga0207542_101757Not Available699Open in IMG/M
3300026944|Ga0207570_1003762All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → unclassified Bradyrhizobiaceae → Bradyrhizobiaceae bacterium966Open in IMG/M
3300026995|Ga0208761_1011271All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → unclassified Bradyrhizobiaceae → Bradyrhizobiaceae bacterium771Open in IMG/M
3300027178|Ga0207606_100346Not Available1209Open in IMG/M
3300027378|Ga0209981_1044647All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → unclassified Bradyrhizobiaceae → Bradyrhizobiaceae bacterium666Open in IMG/M
3300027405|Ga0207464_100265All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → unclassified Bradyrhizobiaceae → Bradyrhizobiaceae bacterium730Open in IMG/M
3300027420|Ga0207436_103616All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → unclassified Bradyrhizobiaceae → Bradyrhizobiaceae bacterium511Open in IMG/M
3300027429|Ga0207616_104425All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → unclassified Bradyrhizobiaceae → Bradyrhizobiaceae bacterium500Open in IMG/M
3300027438|Ga0207564_104581Not Available636Open in IMG/M
3300027444|Ga0207468_1001025All Organisms → cellular organisms → Bacteria → Proteobacteria1426Open in IMG/M
3300027477|Ga0207456_103912All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Nitrobacter → unclassified Nitrobacter → Nitrobacter sp. Nb-311A532Open in IMG/M
3300027543|Ga0209999_1038855All Organisms → cellular organisms → Bacteria → Proteobacteria890Open in IMG/M
3300027552|Ga0209982_1013882All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Nitrobacter → unclassified Nitrobacter → Nitrobacter sp. Nb-311A1215Open in IMG/M
3300027560|Ga0207981_1036438All Organisms → cellular organisms → Bacteria → Proteobacteria896Open in IMG/M
3300027682|Ga0209971_1008208All Organisms → cellular organisms → Bacteria → Proteobacteria2476Open in IMG/M
3300027695|Ga0209966_1001020All Organisms → cellular organisms → Bacteria → Proteobacteria5215Open in IMG/M
3300027695|Ga0209966_1034316All Organisms → cellular organisms → Bacteria → Proteobacteria1038Open in IMG/M
3300027717|Ga0209998_10005025All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales2780Open in IMG/M
3300027775|Ga0209177_10409477All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → unclassified Bradyrhizobiaceae → Bradyrhizobiaceae bacterium545Open in IMG/M
3300027866|Ga0209813_10231548All Organisms → cellular organisms → Bacteria → Proteobacteria695Open in IMG/M
3300027876|Ga0209974_10027240All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → unclassified Bradyrhizobiaceae → Bradyrhizobiaceae bacterium1890Open in IMG/M
3300027907|Ga0207428_10272402All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → unclassified Bradyrhizobiaceae → Bradyrhizobiaceae bacterium1258Open in IMG/M
3300028589|Ga0247818_11378560Not Available508Open in IMG/M
(restricted) 3300031150|Ga0255311_1010434All Organisms → cellular organisms → Bacteria → Proteobacteria1866Open in IMG/M
(restricted) 3300031150|Ga0255311_1011570All Organisms → cellular organisms → Bacteria → Proteobacteria1778Open in IMG/M
(restricted) 3300031197|Ga0255310_10051318All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → unclassified Bradyrhizobiaceae → Bradyrhizobiaceae bacterium1078Open in IMG/M
3300031716|Ga0310813_10002265All Organisms → cellular organisms → Bacteria → Proteobacteria11699Open in IMG/M
3300031720|Ga0307469_11423928All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → unclassified Bradyrhizobiaceae → Bradyrhizobiaceae bacterium662Open in IMG/M
3300031858|Ga0310892_11297008Not Available521Open in IMG/M
3300032174|Ga0307470_10141876All Organisms → cellular organisms → Bacteria → Proteobacteria1455Open in IMG/M
3300032205|Ga0307472_100359732All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → unclassified Bradyrhizobiaceae → Bradyrhizobiaceae bacterium1199Open in IMG/M
3300033004|Ga0335084_10111076All Organisms → cellular organisms → Bacteria → Proteobacteria2850Open in IMG/M
3300034820|Ga0373959_0008772All Organisms → cellular organisms → Bacteria → Proteobacteria1730Open in IMG/M

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).


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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil17.27%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil10.00%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil7.27%
Arabidopsis Thaliana RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere7.27%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil6.36%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil3.64%
Natural And Restored WetlandsEnvironmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands2.73%
Hardwood Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil2.73%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil2.73%
Sandy SoilEnvironmental → Terrestrial → Soil → Sand → Unclassified → Sandy Soil2.73%
Arabidopsis RhizosphereHost-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere2.73%
Populus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere2.73%
Corn RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere2.73%
Agricultural SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil1.82%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Soil1.82%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural → Soil1.82%
Corn RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere1.82%
Switchgrass RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere1.82%
Corn RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere1.82%
Tabebuia Heterophylla RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere1.82%
Populus EndosphereHost-Associated → Plants → Roots → Bulk Soil → Unclassified → Populus Endosphere1.82%
Corn RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere1.82%
Arabidopsis RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere1.82%
SedimentEnvironmental → Aquatic → Freshwater → Wetlands → Sediment → Sediment0.91%
Terrestrial SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil0.91%
Surface SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil0.91%
Sugarcane Root And Bulk SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Sugarcane Root And Bulk Soil0.91%
Corn, Switchgrass And Miscanthus RhizosphereEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Corn, Switchgrass And Miscanthus Rhizosphere0.91%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil0.91%
SoilEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Soil0.91%
Natural And Restored WetlandsEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Natural And Restored Wetlands0.91%
Miscanthus RhizosphereHost-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Miscanthus Rhizosphere0.91%
Arabidopsis RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Rhizosphere0.91%
Rhizosphere SoilHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere Soil0.91%
Switchgrass RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere0.91%

Visualization
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Associated Samples

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Taxon OIDSample NameHabitat TypeIMG/M Link
3300000364Soil microbial communities from Great Prairies - Iowa, Native Prairie soilEnvironmentalOpen in IMG/M
3300000953Soil microbial communities from Great Prairies - Kansas Corn soilEnvironmentalOpen in IMG/M
3300001990Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3Host-AssociatedOpen in IMG/M
3300003324Sugarcane bulk soil Sample H2EnvironmentalOpen in IMG/M
3300003911Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1Host-AssociatedOpen in IMG/M
3300004062Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Sandmound_ThreeSqA_D2EnvironmentalOpen in IMG/M
3300004114Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5EnvironmentalOpen in IMG/M
3300004157Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - - Combined assembly of AARS Block 2EnvironmentalOpen in IMG/M
3300004479Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAsEnvironmentalOpen in IMG/M
3300005093Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of KBS All BlocksEnvironmentalOpen in IMG/M
3300005146Soil and rhizosphere microbial communities from Laval, Canada - mgHABEnvironmentalOpen in IMG/M
3300005162Soil and rhizosphere microbial communities from Laval, Canada - mgLABEnvironmentalOpen in IMG/M
3300005164Soil and rhizosphere microbial communities from Laval, Canada - mgLACEnvironmentalOpen in IMG/M
3300005168Soil and rhizosphere microbial communities from Laval, Canada - mgLPCEnvironmentalOpen in IMG/M
3300005218Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Sandmound_ThreeSqC_D2EnvironmentalOpen in IMG/M
3300005293Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Bulk Soil Replicate 1 : eDNA_1Host-AssociatedOpen in IMG/M
3300005330Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaGEnvironmentalOpen in IMG/M
3300005331Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaGHost-AssociatedOpen in IMG/M
3300005332Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)EnvironmentalOpen in IMG/M
3300005466Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3L metaGEnvironmentalOpen in IMG/M
3300005507Arabidopsis rhizosphere microbial communities from the University of North Carolina - sample Mutant cpr5Host-AssociatedOpen in IMG/M
3300005529Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen16_06102014_R1EnvironmentalOpen in IMG/M
3300005530Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaGEnvironmentalOpen in IMG/M
3300005577Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2Host-AssociatedOpen in IMG/M
3300005713Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)EnvironmentalOpen in IMG/M
3300005937Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1Host-AssociatedOpen in IMG/M
3300006195Populus root and rhizosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1Host-AssociatedOpen in IMG/M
3300006573Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtLAC (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300006577Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtHPA (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300006954Agricultural soil microbial communities from Georgia to study Nitrogen management - GA ControlEnvironmentalOpen in IMG/M
3300007076Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4Host-AssociatedOpen in IMG/M
3300009156Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)Host-AssociatedOpen in IMG/M
3300010047Tropical forest soil microbial communities from Panama - MetaG Plot_30EnvironmentalOpen in IMG/M
3300010359Tropical forest soil microbial communities from Panama - MetaG Plot_15EnvironmentalOpen in IMG/M
3300010362Tropical forest soil microbial communities from Panama - MetaG Plot_22EnvironmentalOpen in IMG/M
3300010396Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-2EnvironmentalOpen in IMG/M
3300012497Arabidopsis rhizosphere microbial communities from North Carolina - M.Cvi.2.old.240510Host-AssociatedOpen in IMG/M
3300012882Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S133-311R-2EnvironmentalOpen in IMG/M
3300012895Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S208-509C-2EnvironmentalOpen in IMG/M
3300012898Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S194-509B-1EnvironmentalOpen in IMG/M
3300012899Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S058-202B-2EnvironmentalOpen in IMG/M
3300012911Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S088-202R-2EnvironmentalOpen in IMG/M
3300012943Backyard soil microbial communities from Emeryville, California, USA - Original compost - Back yard soil (BY)EnvironmentalOpen in IMG/M
3300012951Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_226_MGEnvironmentalOpen in IMG/M
3300012985Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_246_MGEnvironmentalOpen in IMG/M
3300015371Combined assembly of cpr5 and col0 rhizosphere and soilHost-AssociatedOpen in IMG/M
3300015372Soil combined assemblyHost-AssociatedOpen in IMG/M
3300015373Combined assembly of cpr5 rhizosphereHost-AssociatedOpen in IMG/M
3300019356Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S073-202C-2 (version 2)EnvironmentalOpen in IMG/M
3300022883Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S066-202C-4EnvironmentalOpen in IMG/M
3300022899Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S016-104C-6EnvironmentalOpen in IMG/M
3300023062Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S081-202R-4EnvironmentalOpen in IMG/M
3300023260Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S197-509C-6EnvironmentalOpen in IMG/M
3300024181Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK34EnvironmentalOpen in IMG/M
3300025538Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Browns_TuleC_D2 (SPAdes)EnvironmentalOpen in IMG/M
3300025911Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025913Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025914Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025919Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025920Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025921Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025930Switchgrass rhizosphere bulk soil microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5 (SPAdes)EnvironmentalOpen in IMG/M
3300026053Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - RushOxbow_ThreeSqA_D1 (SPAdes)EnvironmentalOpen in IMG/M
3300026452Sediment microbial communities from tidal freshwater marsh on Altamaha River, Georgia, United States - 7-17 PU4EnvironmentalOpen in IMG/M
3300026725Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G07A5-12 (SPAdes)EnvironmentalOpen in IMG/M
3300026745Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G08K1-12 (SPAdes)EnvironmentalOpen in IMG/M
3300026853Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G05A5w-12 (SPAdes)EnvironmentalOpen in IMG/M
3300026861Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G06A5a-12 (SPAdes)EnvironmentalOpen in IMG/M
3300026939Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G10A5-12 (SPAdes)EnvironmentalOpen in IMG/M
3300026944Soil microbial communities from Kellog Biological Station, Michigan, USA - Nitrogen cycling UWRJ-G01K2-12 (SPAdes)EnvironmentalOpen in IMG/M
3300026995Soil and rhizosphere microbial communities from Laval, Canada - mgLAB (SPAdes)EnvironmentalOpen in IMG/M
3300027178Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G05.2A5-11 (SPAdes)EnvironmentalOpen in IMG/M
3300027378Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M1 PM (SPAdes)Host-AssociatedOpen in IMG/M
3300027405Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G01A1-12 (SPAdes)EnvironmentalOpen in IMG/M
3300027420Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G08A1-10 (SPAdes)EnvironmentalOpen in IMG/M
3300027429Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G06A5a-10 (SPAdes)EnvironmentalOpen in IMG/M
3300027438Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G08A3a-11 (SPAdes)EnvironmentalOpen in IMG/M
3300027444Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G10A1w-11 (SPAdes)EnvironmentalOpen in IMG/M
3300027477Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G10.2A4w-11 (SPAdes)EnvironmentalOpen in IMG/M
3300027543Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M1 AM (SPAdes)Host-AssociatedOpen in IMG/M
3300027552Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M1 S AM (SPAdes)Host-AssociatedOpen in IMG/M
3300027560Soil and rhizosphere microbial communities from Laval, Canada - mgLPC (SPAdes)EnvironmentalOpen in IMG/M
3300027682Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M3 S AM (SPAdes)Host-AssociatedOpen in IMG/M
3300027695Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Rhizosphere soil Co-N PM (SPAdes)Host-AssociatedOpen in IMG/M
3300027717Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Endophyte Co-N S PM (SPAdes)Host-AssociatedOpen in IMG/M
3300027775Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Control (SPAdes)EnvironmentalOpen in IMG/M
3300027866Populus root and rhizosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 (SPAdes)Host-AssociatedOpen in IMG/M
3300027876Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M3 S PM (SPAdes)Host-AssociatedOpen in IMG/M
3300027907Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes)Host-AssociatedOpen in IMG/M
3300028589Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Glucose_Day1EnvironmentalOpen in IMG/M
3300031150 (restricted)Sandy soil microbial communities from University of British Columbia, Vancouver, Canada - EtOH4_T0_E4EnvironmentalOpen in IMG/M
3300031197 (restricted)Sandy soil microbial communities from University of British Columbia, Vancouver, Canada - EtOH1_T0_E1EnvironmentalOpen in IMG/M
3300031716Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - YN3EnvironmentalOpen in IMG/M
3300031720Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515EnvironmentalOpen in IMG/M
3300031858Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C8D2EnvironmentalOpen in IMG/M
3300032174Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_05EnvironmentalOpen in IMG/M
3300032205Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05EnvironmentalOpen in IMG/M
3300033004Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.4EnvironmentalOpen in IMG/M
3300034820Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_N_2Host-AssociatedOpen in IMG/M

Geographical Distribution
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Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID Sample Taxon ID Habitat Sequence
INPhiseqgaiiFebDRAFT_10528604033300000364SoilMAPKPGSHTKRPAAGCAIALMLSVFPYAPANAAKPPYEGCVAVNKQEYNAAKKQHLLRTRFTQYVRTGWPGRRQYWYCR*
JGI11615J12901_1012063563300000953SoilMGPIVGACAKRSVAGGAIALALSALPHTAASAAKPPYGNCVAVTKQEYDSAKKQHMLRTRYTEYVRTGLPGRRQYWYCR*
JGI24737J22298_1000848183300001990Corn RhizosphereMGPKLGTRAKXSATGVAIALALSALPHAPASAAKPPYGSCVAVTKQEYDSAKKQHMLQTRYTQYVRTGLPGRRQYWYCR*
soilH2_1017660173300003324Sugarcane Root And Bulk SoilMTGKLIAAAASVSMAVATLLMLTALPQSEAHAAKAPYVGCVAVTRQEYDSARRQHLLRTRYSQYMRTGLPGRRQYWYCR*
JGI25405J52794_1004275733300003911Tabebuia Heterophylla RhizosphereMAPKPGSQSKRSAGGCAIALMLSVFPCAPANAAKPPYEGCVAVNKQEYNAAKKQHLLRTRFTQYVRTGLPG
Ga0055500_1006263313300004062Natural And Restored WetlandsMGTKFGVFAKRSAAGGAIALVLSALSPAPASAAKPPYAGCVAVTKQEYDSAKKQHMLRTRYTEYVRTGLLGRRQYWYCR*
Ga0062593_10038290213300004114SoilMAPTLAASSKRSTAGGAIALLLSTLPYTPANAAKPPYEGCVAVTRQEYNSAKKQHLLRTRFTQYVRTGLPGRRQYWYCR*
Ga0062590_10135036913300004157SoilMEPTLGIRAKRSAAGGAIVLVLCVLPPAPASAAKPPYAGCVAVTKQEYDSAKKQHMLRTRYTEYVRTGLPGRRQYWYCR*
Ga0062595_10013186013300004479SoilMNLGRFGYFVCGAGVAATALSVLFPWSPANAAKPPYGNCVAVTKQEYDSAKKQHMLRTRFTEYVRTGLPGRRQYWYCR*
Ga0062595_10019035833300004479SoilMGPTLGIRAKRSAAGGAIVLVLCALPHAPASAAKPPYAGCVVVTKQEYDSAKKQHMLRTRYTEYVRTGLPGRRQYWYCR*
Ga0062595_10112261923300004479SoilSQAFACGSSRQMGPKLGTRAKRSATGVAIALALSALPHAPASAAKPPYGSCVAVTKQEYDSAKKQHMLQTRYTQYVRTGLPGRRQYWYCR*
Ga0062594_10134250723300005093SoilMGPTLGTRAKRSAAGGAIALVLSALPHASASAAKPPYAGCVAVTKQEYDSAKKQHMLRTRFTEYVRTGLPGRRQYWYCR*
Ga0066817_101850113300005146SoilMGPTLGTRAKRSTAGGAIALVLSALPHAPASAAKPPYARCVAVTKQEYDSAKKQHMLRTRFTEYVRTGLPGRRQYWYCR*
Ga0066814_1007527913300005162SoilMGPTLGTHAKRSATGVAIALLLSALPHAPASAAKPPYAGCVVVTKQEYDSAKKQHMLRTRYTEYVRT
Ga0066815_1002547113300005164SoilMGPKLGTRAKRSATGVAIALALSALPHAPASAAKPPYGSCVAVTKQEYDSAKKQHMLQTRYTQYVRTGLPGRRQYWYCR*
Ga0066809_1020012613300005168SoilMGPTLGTRAKRSTAGGAIALVLSALPHAPASAAKPPYAGCVAVTKQEYDSAKKQHMLRTRYTEYVRTGLPGRRQYWYCR*
Ga0068996_1001075543300005218Natural And Restored WetlandsMGTKFGVFAKRSAAGGAIALVLSALSPAPASAAKLPYAGCVAVTKQEYDSAKKQHMLRTRYTEYVRTGLLGRRQYWYCR*
Ga0065715_1000772363300005293Miscanthus RhizosphereMGPKLGTRAKKSATGVAIALALSALPHAPASAAKPPYGSCVAVTKQEYDSAKKQHMLQTRYTQYVRTGLPGRRQYWYCR*
Ga0070690_10176050813300005330Switchgrass RhizosphereMGPKLGTRAKRSATGVAIALALSALPHAPASAAKPPYGSCVAVTKQEYDSAKKQHMLQTRYTQYVRT
Ga0070670_10119547723300005331Switchgrass RhizosphereMGPKLGTRAKRSATGVAIALALSALPHTPASAAKPPYGSCVAVTKQEYDSAKKQHMLQTRYTQYVRTGLPGRRQYWYCR*
Ga0066388_10273713723300005332Tropical Forest SoilMAPKPGSHTKRSAAGGAVALVLSVFPYASANAANPPYEGCVAVTKQEYNAAKKQHLLRTRFTQYVRTGLPGRRQYWYCR*
Ga0066388_10403778023300005332Tropical Forest SoilMEPKRGAHTKRSAMGGTIALALSVFPYASANAAKPPYEGCVAVTKQEYNAAKKQHLLRTRFTQYMRTGLPGQRQYWYCR*
Ga0070685_1037085123300005466Switchgrass RhizosphereMGPKLGTRAKRSATGVAIALALSALPHAPASAAKPPYGSCVAVTKQEYDSAKKQHMLQTRYTQYVRTGLPGRRQYWY
Ga0074259_1011532013300005507Arabidopsis RhizosphereMGPKLGTRAKRSATGVAIALALSALPHAPASAAKPPYGSCVAVTKQEYDSAKKQHMLQTRYTQYVRTGLPGRRQYWYC
Ga0070741_10012091203300005529Surface SoilMTRGLNASAVSVAACAVIALLVTTLPVSPAQAAKPPYTGCVAVTKQEYDSAKRQHMLRTRFSQYLRTGLPGRRQYWYCR*
Ga0070679_10051839643300005530Corn RhizosphereRFGYFVCGAGVAATALSVLFPWSPANAAKPPYGNCVAVTKQEYDSAKKQHMLRTRFTEYVRTGLPGRRQYWYCR*
Ga0068857_10152393913300005577Corn RhizosphereAIALALSALPHAPASAAKPPYGSCVAVTKQEYDSAKKQHMLQTRYTQYVRTGLPGRRQYWYCR*
Ga0066905_10185160913300005713Tropical Forest SoilMAPKPGSHTKRSAAGGAVALVLSVFPYASANAANPPYEGCVAVTKQEYNAAKKQHLLRTRFTQYVRT
Ga0081455_10000051583300005937Tabebuia Heterophylla RhizosphereMAPKPGSQSKRSAGGCAIALMLSVFPCAPANAAKPPYEGCVAVNKQEYNAAKKQHLLRTRFTQYVRTGLPGRRQYWYCR*
Ga0075366_1035337533300006195Populus EndosphereQMGPTLGIRAKRSAAGGAIVLVLCALPHAPASAAKPPYAGCVVVTKQEYDSAKKQHMLRTRYTEYVRTGLPGRRQYWYCR*
Ga0074055_1187012123300006573SoilMGPTLGTRAKRSAAGGAIALVLSVLPYAPASAAKPPYAGCVAVTKQEYDSAKKQHMLRTRFTEYVRTGLPGRRQYWYCR*
Ga0074050_1205725923300006577SoilMGPTLGTRAKRSTAGGAIALVLSALPHAPASAAKPPYAGCVAVTKQEYDSAKKQHMLQTRYTQYVRTGLPGRRQYWYCR*
Ga0079219_1039758123300006954Agricultural SoilMGLKLGSCVKRSAAAGAIVLLLSLLPHQPASAAKPPYGSCVAVTKQEYDSAKKQHMLRTRYTEYVRTGLPGRRQYWYCR*
Ga0075435_10024843053300007076Populus RhizosphereMGPTLGIRAKRSAAGGAIVLVLCALPHAPASAAKPPYAGCVVVTKQEYDSAKKQHMLRTRYTEYV
Ga0111538_1039808533300009156Populus RhizosphereMVLRRGSRVKRSAAGGAIALMLTALPCAPATAAKPPYGNCVAVTKQEYDSAKKQHLLRTRFTEYVRTGLPGRRQYWYCR*
Ga0126382_1118678213300010047Tropical Forest SoilRHLQYGSSRQMEPKRGAHTKRSAMGGTIALALSVFPYASANAAKPPYEGCVAVTKQEYNAAKKQHLLRTRFTQYMRTGLPGQRQYWYCR*
Ga0126382_1165805323300010047Tropical Forest SoilMEPKLGAHTKRPAAGVAIALVLGVFPCASANAAKPPYEGCVAVAKQEYNAAKKQHLLRTRFTQYVRTGLPGRRQYWYCR*
Ga0126376_1040553223300010359Tropical Forest SoilMGPKSGARTKRAAAGGAIALVLSVFPYASANAAKPPYEGCVAVAKQEYNAAKKQHLLRTRFTQYVRTGLPGRRQYWYCR*
Ga0126376_1165526823300010359Tropical Forest SoilGVAIGLVLSAFPSASANAAKPPYEGCVAVAKQEYNAAKKQHLLRTRFTQYVRTGLPGRRQYWYCR*
Ga0126377_1000628693300010362Tropical Forest SoilMQPKLGAYTTRSAAGVAIGLVLSAFPGASANAAKPPYEGCVAVAKQEYNAAKKQHLLRTRFTQYVRTGLPGRRQYWYCR*
Ga0126377_1000633173300010362Tropical Forest SoilMGPKSGARTKRAAAGGAIALVLSVFPCASANAAKPPYEGCVAVAKQEYNAAKKQHLLRTRFTQYVRTGLPGRRQYWYCR*
Ga0126377_1122482313300010362Tropical Forest SoilKTRSAAGAVVALALSTLPSASATAAKPPYEGCVAVAKQEYNAAKKQHLLRTRFTQYVRTGLPGRRQYWYCR*
Ga0134126_1249598323300010396Terrestrial SoilGYFVCGAGVAATALSVLFPWSPANAAKPPYGNCVAVTKQEYDSAKKQHMLRTRFTEYVRTGLPGRRQYWYCR*
Ga0157319_101563613300012497Arabidopsis RhizosphereMGPKLGTRAKRSATGVAIALALSAWRHAPASAAKPPYGSCVAVTKQEYDSAKKQHMLQTRYTQYVRTGLPGRRQYW
Ga0157304_100162813300012882SoilRSAAGGAIVLVLCALPHAPASAAKPPYAGCVVVTKQEYDSAKKQHMLRTRYTEYVRTGLPGRRQYWYCR*
Ga0157309_1000176713300012895SoilMGPTLGIRAKRSAAGGAIVLVLCALPHAPASAAKPPYAGCVVVTKQEYDSAKKQHMLRTRYTEYVRTGLPGRRQY
Ga0157293_1000721253300012898SoilRAKRSAAGGAIVLVLCVLPPAPASAAKPPYAGCVAVTKQEYDSAKKQHMLRTRYTEYVRTGLPGRRQYWYCR*
Ga0157299_1010134723300012899SoilMGPKLGACTKRSAAGGAIALALSALPHAPASAAKPPYGNCVAVTKQEYDSAKKQHMLRTRYTEYVRTGLPGRRQYWYCR*
Ga0157301_1016373823300012911SoilMGPKLGTRAKRSATGVAIALALSALPHTPASAAKPPYGSCVAVTKQEYDSAKKQHMLQTRYTQYVRTGLPGR
Ga0164241_1079413723300012943SoilQMAPTLAGSAKRSTAGGALALLLSALAYTPASAAKPPYEGCVAVAKQEYNSAKKQHLLRTRFTQYVRTGLPGRRQYWYCR*
Ga0164300_1000361733300012951SoilMEPTLGIRAKRSAAGGAIVLVLCALPHAPASAAKPPYAGCVVVTKQEYDSAKKQHMLRTRYTEYVRTGLPGRRQYWYCR*
Ga0164308_1169336813300012985SoilMGPKLGTRAKRSATGVAIALALSALPHAPASAAKPPYAGCVAVTKQEYDSAKKQHMLRTRYTEYVRTG
Ga0132258_1328596313300015371Arabidopsis RhizosphereMGPKFGACAKRSAAGGAIALVLSALPHAPASAAKPPYGNCVAVTKQEYDSANKQHMLRTRYTEYVRTGLPGRRQYWYCR*
Ga0132256_10012282873300015372Arabidopsis RhizosphereGGAIALALSALPHAPASAAKPPYAGCVAVTKQEYDSAKKQHMLRTRYTEYVRTGLPGRRQYWYCR*
Ga0132256_10144420113300015372Arabidopsis RhizosphereMGPTLGIRAKRSAAGGAIVLVLCALPHAPASAAKPPYAGCVAVTKQEYDSAKKQHMLRTRYTEYVRTGLPGRRQYWYCR*
Ga0132257_10068715723300015373Arabidopsis RhizosphereMGPTLGIRAKRSAAGGAIVLVLCALPHAPASAAKPPYAGGVVVTKQEYDSAKKQHMLRTRYTEYVRTGLPGRRQYWYCR*
Ga0173481_1000127323300019356SoilMGPKLGTRAKRSATGVAIALALSALPHTPASAAKPPYGSCVAVTKQEYDSAKKQHMLQTRYTQYVRTGLPGRRQYWYCR
Ga0173481_1000935463300019356SoilMGPTLGIRAKRSAAGGAIVLVLCALPHAPASAAKPPYAGCVVVTKQEYDSAKKQHMLRTRYTEYVRTGLPGRRQYWYCR
Ga0247786_110487313300022883SoilMGPKLGTRAKRSATGVAIALALSALPHAPASAAKPPYGSCVAVTKQEYDSAKKQHMLQTRYTQYVRTGLPGRRQYW
Ga0247795_101898013300022899SoilMGPKLGTRAKRSATGVAIALALSALPHAPASAAKPPYGSCVAVTKQEYDSAKKQHMLQTRYTQYVRTG
Ga0247791_100496033300023062SoilMGPKLGTRAKRSATGVAIALALSALPHAPASAAKPPYGSCVAVTKQEYDSAKKQHMLQTRYTQYVRTGLPGRRQYWYCR
Ga0247798_101078213300023260SoilKRSAAGGAIVLVLCALPHAPASAAKPPYAGCVVVTKQEYDSAKKQHMLRTRYTEYVRTGLPGRRQYWYCR
Ga0247693_103018023300024181SoilMGPKLGTRAKKSATGVAIALALSALPHAPASAAKPPYGSCVAVTKQEYDSAKKQHMLQTRYTQYVRTGLPGRRQYWYCR
Ga0210132_100185353300025538Natural And Restored WetlandsMGTKFGVFAKKSAAGGAIALVLSALSPAPASAAKPPYAGCVAVTKQEYDSAKKQHMLRTRYTEYVRTGLLGRRQYWYCR
Ga0207654_1079284233300025911Corn RhizosphereGTRAKRSATGVAIALALSALPHAPASAAKPPYGSCVAVTKQEYDSAKKQHMLQTRYTQYVRTGLPGRRQYWYCR
Ga0207695_1174860823300025913Corn RhizosphereTRKMGPKLGACTKRSAAGGAIALALSALSHAPASAAKPPYGSCVAVTKQEYDSAKKQHMLQTRYTQYVRTGLPGRRQYWYCR
Ga0207671_1120080413300025914Corn RhizosphereAGAAIALALSALPHTAASAAKPPYGNCVAVTKQEYDSAKKQHMLRTRYTEYVRTGLPGRRQYWYCR
Ga0207657_1113102513300025919Corn RhizosphereMNLGRFGYFVCGAGVAATALSVLFPWSPANAAKPPYGNCVAVTKQEYDSAKKQHMLRTRFTEYVRTGLPGRRQYWYCR
Ga0207649_1025734523300025920Corn RhizosphereMNLGRFGYFVCGAGVAATALSVLFPWSPANAAKPPYGNCVAVTKQEYDSAKKQHMLRTRFTEYVRTG
Ga0207652_1024201333300025921Corn RhizosphereMAPTLAASSKRSTAGGAIALLLSTLPYTPANAAKPPYEGCVAVTRQEYNSAKKQHLLRTRFTQYVRTGLPGRRQYWYCR
Ga0207701_1112785423300025930Corn, Switchgrass And Miscanthus RhizosphereMEPTLGIRAKRSAAGGAIVLVLCVLPPAPASAAKPPYAGCVAVTKQEYDSAKKQHMLRTRYTEYVRTGLPGRRQYWYCR
Ga0208422_103347113300026053Natural And Restored WetlandsFAKKSAAGGAIALVLSALSPAPASAAKPPYAGCVAVTKQEYDSAKKQHMLRTRYTEYVRTGLLGRRQYWYCR
Ga0256821_100165743300026452SedimentMGPKFGVFVKICTAGGAIALVMSALSSASASAAKPPYAGCVAVTKQEYDSAKKQHMLRTRYTEYVRTGLLGRRQYWYCR
Ga0207474_10206213300026725SoilKRSAAGGAIVLVLCALPHAPASAAKPPYAGCVVVTKQEYDSAKKQHMLRTRFTEYVRTGLPGRRQYWYCR
Ga0207576_10173413300026745SoilGGAIVLVLCALPHAPASAAKPPYAGCVVVTKQEYDSAKKQHMLRTRYTEYVRTGLPGRRQYWYCR
Ga0207443_100165313300026853SoilGAIVLVLCALPHAPASAAKPPYAGCVVVTKQEYDSAKKQHMLRTRYTEYVRTGLPGRRQYWYCR
Ga0207503_100862723300026861SoilMGPKLGTRAKRSATGVAIALALSALPHTPASAAKPPYGSCVAVTKQEYDSAKKQHMLRTRYTEYVRTGLPGRRQYWYCR
Ga0207542_10175713300026939SoilQMGPTLGIRAKRSAAGGAIVLVLCALPHAPASAAKPPYAGCVVVTKQEYDSAKKQHMLRTRYTEYVRTGLPGRRQYWYCR
Ga0207570_100376213300026944SoilRQMGPKLGTRAKKSATGVAIALALSALPHAPASAAKPPYGSCVAVTKQEYDSAKKQHMLQTRYTQYVRTGLPGRRQYWYCR
Ga0208761_101127133300026995SoilGDRRQMEPKLGARARRSAAGGAIALVLSALPPAPASAAKPPYGSCVAVTKQEYDSAKKQHMLQTRYTQYVRTGLPGRRQYWYCR
Ga0207606_10034613300027178SoilGVASQAFACGSSRQMGPKLGTRAKRSATGVAIALALSALPHAPASAAKPPYGSCVAVTKQEYDSAKKQHMLQTRYTQYVRTGLPGRRQYWYCR
Ga0209981_104464713300027378Arabidopsis Thaliana RhizosphereMGPTLGIRAKRSAAGGAIVLVLCALPHAPASAAKPPYAGCVAVTKQEYDSAKKQHMLRTRFTEYVRTGLPGRRQYWYCR
Ga0207464_10026513300027405SoilMEPTLGIRAKRSAAGGAIVLVLCALPHAPASAAKPPYAGCVVVTKQEYDSAKKQHMLQTRYTQYVRTGLPGRRQYWYCR
Ga0207436_10361623300027420SoilVAIALALSALPHTPASAAKPPYGSCVAVTKQEYDSAKKQHMLQTRYTQYVRTGLPGRRQYWYCR
Ga0207616_10442513300027429SoilVASQAFACGSSRQMGPKLGTRAKRSATGVAIALALSALPHTPASAAKPPYGSCVAVTKQEYDSAKKQHMLQTRYTQYVRTGLPGRRQYWYCR
Ga0207564_10458113300027438SoilAKRSAAGGAIVLVLCALPHAPASAAKPPYAGCVVVTKQEYDSAKKQHMLRTRYTEYVRTGLPGRRQYWYCR
Ga0207468_100102533300027444SoilMGPTLGIRAKRSAAGGAIVLVLCALPHAPASAAKPPYAGCVVVTKQEYDSAKKQHMLQTRYTQYVRTGLPGRRQYWYCR
Ga0207456_10391213300027477SoilMGPKLGTRAKRSATGVAIALALSALPHTPASAAKPPYGSCVAVTKQEYDSAKKQHMLQTRYTQYVRT
Ga0209999_103885523300027543Arabidopsis Thaliana RhizosphereMGPTLVTRAKRSAAGGAIALVLSALPHAPASAAKPPYAGCVAVTKQEYDSAKKQHMLRTRFTEYVRTGLPGRRQYWYCR
Ga0209982_101388223300027552Arabidopsis Thaliana RhizosphereMGPTLVTRAKRSATGVAIALALSALPHTPASAAKPPYAGCVAVTKQEYDSAKKQHMLRTRYTEYVRTGLPGRRQYWYCR
Ga0207981_103643823300027560SoilMGPTLGTRAKRSTAGGAIALVLSALPHAPASAAKPPYAGCVAVTKQEYDSAKKQHMLRTRYTEYVRTGLPGR
Ga0209971_100820843300027682Arabidopsis Thaliana RhizosphereMGPTLGIRAKRSAAGGAIVLVLCALPHAPASAAKPPYAGCVAVTKQEYDSAKKQHMLRTRYTEYVRTGLPGRRQYWYCR
Ga0209966_100102083300027695Arabidopsis Thaliana RhizosphereMGPKLGTRAKKSATGIAIALALSALPHAPASAAKPPYGSCVAVTKQEYDSAKKQHMLQTRYTQYVRTGLPGRRQYWYCR
Ga0209966_103431633300027695Arabidopsis Thaliana RhizosphereMGPTLVTRAKRSAAGGAIALVLSALPHAPASAAKPPYAGCVAVTKQEYDSAKKQHMLRTRFTEYVRTGLP
Ga0209998_1000502513300027717Arabidopsis Thaliana RhizosphereMGPTLGIRAKRSAAGGAIVLVLCALPHAPASAAKPPYAGCVVVTKQEYDSAKKQHMLRTRYTEYVRTGLPG
Ga0209177_1040947713300027775Agricultural SoilMGLKLGSCVKRSAAAGAIVLLLSLLPHQPASAAKPPYGSCVAVTKQEYDSAKKQHMLRTRYTEYVRTGLPGRRQYWYCR
Ga0209813_1023154823300027866Populus EndosphereMGPTLGIRAKRSAAGGAIVLVLCALPHAPASAAKPPYAGCVVVTKQEYDSAKKQHMLRTRFTEYVRTGLPGRRQYWYCR
Ga0209974_1002724013300027876Arabidopsis Thaliana RhizosphereGGSRQMGPKFGACAKRCAAGGAIALVLSALPHAPASAAKPPYGNCVAVTKQEYDSAKKQHMLRTRYTEYVRTGLPGRRQYWYCR
Ga0207428_1027240243300027907Populus RhizosphereMVLRRGSRVKRSAAGGAIALMLTALPCAPATAAKPPYGNCVAVTKQEYDSAKKQHLLRTRFTEYVRTGLPGRRQYWYCR
Ga0247818_1137856023300028589SoilAGGAIVLVLCALPHAPASAAKPPYAGCVVVTKQEYDSAKKQHMLRTRYTEYVRTGLPGRRQYWYCR
(restricted) Ga0255311_101043423300031150Sandy SoilMGPTLVTRAKRSAAGGAIVLVLSALPHGPASAAKPPYAGCVAVTKQEYDSAKKQHMLRTRFTEYVRTGLPGRRQYWYCR
(restricted) Ga0255311_101157043300031150Sandy SoilMRSKFGTRAKRSATGVAITLALSAVPHAPASAAKPPYGSCVAVTKQEYDSAKKQHMLRTRYTQYVRTGLPGRRQYWYCR
(restricted) Ga0255310_1005131833300031197Sandy SoilMGPTLVTCAKRSAAGGAIVLVLSALPHGPASAAKPPYAGCVAVTKQEYDSAKKQHMLRTRFTEYVRTGLPGRRQYWYCR
Ga0310813_10002265183300031716SoilMGPKLGACTKRSAAGGAIALALSALSHAPASAAKPPYGNCVAVTKQEYDSAKKQHMLRTRYTEYVRTGLPGRRQYWYCR
Ga0307469_1142392823300031720Hardwood Forest SoilMAPKPGSHTKRSAAGCTIALMLSVFPYAPANAANPPYEGCVAVNKQEYNAAKKQHLLRTRFTQYVRTGWPGRRQYWYCR
Ga0310892_1129700823300031858SoilMGPTLGTRAKRSTAGGAIALVLSALPHAPASAAKPPYAGCVAVTKQEYDSAKKQHMLRTRFTEYVRTGLPGRRQYWYCR
Ga0307470_1014187613300032174Hardwood Forest SoilMAPKPGSHTKRSAAGCAIALVLSVFPYAPANAAKPPYEGCVAVNKQEYNAAKKQHLLR
Ga0307472_10035973233300032205Hardwood Forest SoilISGSDRLGRHLQYGSNRQMAPKPGSHTKRSAAGCTIALMLSVFPYAPANAANPPYEGCVAVNKQEYNAAKKQHLLRTRFTQYVRTGWPGRRQYWYCR
Ga0335084_1011107663300033004SoilMREQPQMRSKFGACAKRSAAGGAIALALSGLPHAPASAAKPPYGNCVAVTKQEYDSAKKQHMLRTRYTEYVRTGLPGRRHYWYCR
Ga0373959_0008772_445_6843300034820Rhizosphere SoilMGPTLGIRAKRSAAGGAIVLVLCALPHAPACAAKPPYAGCVVVTKQEYDSAKKQHMLRTRYTEYVRTGLPGRRQYWYCR

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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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