NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Metagenome Family F096028

Metagenome Family F096028

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
Select file to download:
   Download


Overview

Basic Information
Family ID F096028
Family Type Metagenome
Number of Sequences 105
Average Sequence Length 40 residues
Representative Sequence ITISVDFRVDWASFELIDGDFHSHSFGGSVKRNDSMLEEN
Number of Associated Samples 70
Number of Associated Scaffolds 105

Quality Assessment
Transcriptomic Evidence No
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 0.00 %
% of genes near scaffold ends (potentially truncated) 100.00 %
% of genes from short scaffolds (< 2000 bps) 81.90 %
Associated GOLD sequencing projects 62
AlphaFold2 3D model prediction Yes
3D model pTM-score0.18

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
Powered by Skylign

Most Common Taxonomy
Group Unclassified (66.667 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine
(36.191 % of family members)
Environment Ontology (ENVO) Unclassified
(77.143 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Saline → Water (saline)
(65.714 % of family members)



 ⦗Top⦘

Multiple Sequence Alignments

Select alignment to view:      


 ⦗Top⦘

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 10.29%    β-sheet: 0.00%    Coil/Unstructured: 89.71%
Feature Viewer
Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.18
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


 ⦗Top⦘

Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 105 Family Scaffolds
PF13229Beta_helix 5.71
PF00892EamA 3.81
PF13385Laminin_G_3 3.81
PF02699YajC 2.86
PF13460NAD_binding_10 2.86
PF02493MORN 2.86
PF04231Endonuclease_1 1.90
PF13414TPR_11 1.90
PF12697Abhydrolase_6 1.90
PF13540RCC1_2 1.90
PF07603DUF1566 0.95
PF01555N6_N4_Mtase 0.95
PF01436NHL 0.95
PF13432TPR_16 0.95
PF00059Lectin_C 0.95
PF00578AhpC-TSA 0.95
PF03781FGE-sulfatase 0.95
PF07992Pyr_redox_2 0.95
PF13247Fer4_11 0.95
PF13517FG-GAP_3 0.95
PF07510DUF1524 0.95
PF06739SBBP 0.95
PF09851SHOCT 0.95
PF13442Cytochrome_CBB3 0.95
PF11074DUF2779 0.95
PF08530PepX_C 0.95

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 105 Family Scaffolds
COG1862Protein translocase subunit YajCIntracellular trafficking, secretion, and vesicular transport [U] 2.86
COG2849Antitoxin component YwqK of the YwqJK toxin-antitoxin moduleDefense mechanisms [V] 2.86
COG4642Uncharacterized conserved proteinFunction unknown [S] 2.86
COG2356Endonuclease IReplication, recombination and repair [L] 1.90
COG0863DNA modification methylaseReplication, recombination and repair [L] 0.95
COG1041tRNA G10 N-methylase Trm11Translation, ribosomal structure and biogenesis [J] 0.95
COG1262Formylglycine-generating enzyme, required for sulfatase activity, contains SUMF1/FGE domainPosttranslational modification, protein turnover, chaperones [O] 0.95
COG2189Adenine specific DNA methylase ModReplication, recombination and repair [L] 0.95
COG2936Predicted acyl esteraseGeneral function prediction only [R] 0.95


 ⦗Top⦘

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
UnclassifiedrootN/A66.67 %
All OrganismsrootAll Organisms33.33 %

Visualization
Powered by ApexCharts

Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300001459|MCRcombined_1383821Not Available576Open in IMG/M
3300001587|JGI12001J15744_1016956Not Available808Open in IMG/M
3300001676|TuiMalila_1008770Not Available2872Open in IMG/M
3300001676|TuiMalila_1032599All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria1118Open in IMG/M
3300001678|Mariner_1013353All Organisms → Viruses → Predicted Viral2667Open in IMG/M
3300001678|Mariner_1040385Not Available1269Open in IMG/M
3300001680|KiloMoana_10032304All Organisms → cellular organisms → Bacteria → Proteobacteria → Candidatus Lambdaproteobacteria → Candidatus Lambdaproteobacteria bacterium2345Open in IMG/M
3300001680|KiloMoana_10066086Not Available1468Open in IMG/M
3300001680|KiloMoana_10073580Not Available1357Open in IMG/M
3300001681|Abe_10038740All Organisms → cellular organisms → Bacteria2710Open in IMG/M
3300001683|GBIDBA_10061581All Organisms → cellular organisms → Bacteria → Proteobacteria → Candidatus Lambdaproteobacteria → Candidatus Lambdaproteobacteria bacterium1339Open in IMG/M
3300001683|GBIDBA_10107237Not Available846Open in IMG/M
3300001763|supr51_1002132Not Available3959Open in IMG/M
3300001763|supr51_1008795Not Available1556Open in IMG/M
3300001768|supr62_1003740Not Available3967Open in IMG/M
3300001769|supr60_1003335All Organisms → cellular organisms → Bacteria4167Open in IMG/M
3300001776|supr47_1060620Not Available563Open in IMG/M
3300001780|supr46_1016627Not Available1808Open in IMG/M
3300001781|Deep_1011445All Organisms → cellular organisms → Bacteria → Proteobacteria → Candidatus Lambdaproteobacteria → Candidatus Lambdaproteobacteria bacterium4784Open in IMG/M
3300001781|Deep_1019487All Organisms → cellular organisms → Bacteria1835Open in IMG/M
3300001781|Deep_1033912Not Available1194Open in IMG/M
3300001781|Deep_1054844Not Available806Open in IMG/M
3300001783|Vondamm_10098920Not Available767Open in IMG/M
3300001783|Vondamm_10115820Not Available676Open in IMG/M
3300001840|shallow_1077063All Organisms → cellular organisms → Bacteria → Proteobacteria1016Open in IMG/M
3300001845|shallow_1096587All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Balneolaeota → Balneolia → Balneolales → Balneolaceae554Open in IMG/M
3300002919|JGI26061J44794_1006437All Organisms → cellular organisms → Bacteria3573Open in IMG/M
3300002919|JGI26061J44794_1010669Not Available2454Open in IMG/M
3300002919|JGI26061J44794_1046384All Organisms → cellular organisms → Bacteria → Proteobacteria809Open in IMG/M
3300002965|JGI26063J44948_1044000All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium880Open in IMG/M
3300004111|Ga0008651_10198114Not Available608Open in IMG/M
3300004274|Ga0066607_1030056Not Available1509Open in IMG/M
3300004277|Ga0066611_10326925Not Available506Open in IMG/M
3300004278|Ga0066609_10030683Not Available1917Open in IMG/M
3300005399|Ga0066860_10179913Not Available725Open in IMG/M
3300005594|Ga0066839_10167437Not Available763Open in IMG/M
3300005953|Ga0066383_10052687All Organisms → cellular organisms → Bacteria → Proteobacteria → Candidatus Lambdaproteobacteria → Candidatus Lambdaproteobacteria bacterium1276Open in IMG/M
3300005953|Ga0066383_10191730Not Available605Open in IMG/M
3300005953|Ga0066383_10209003Not Available577Open in IMG/M
3300005953|Ga0066383_10214449Not Available568Open in IMG/M
3300006002|Ga0066368_10242983Not Available612Open in IMG/M
3300006013|Ga0066382_10094260Not Available1050Open in IMG/M
3300006013|Ga0066382_10249347Not Available611Open in IMG/M
3300006080|Ga0081602_1165734Not Available990Open in IMG/M
3300006166|Ga0066836_10642002Not Available643Open in IMG/M
3300006304|Ga0068504_1044053Not Available634Open in IMG/M
3300006325|Ga0068501_1534398Not Available539Open in IMG/M
3300006331|Ga0068488_1623425Not Available719Open in IMG/M
3300006900|Ga0066376_10158498Not Available1377Open in IMG/M
3300006900|Ga0066376_10427362Not Available755Open in IMG/M
3300006900|Ga0066376_10605829Not Available611Open in IMG/M
3300008629|Ga0115658_1021271All Organisms → cellular organisms → Bacteria4824Open in IMG/M
3300009173|Ga0114996_10230912Not Available1476Open in IMG/M
3300009173|Ga0114996_10441488Not Available990Open in IMG/M
3300009173|Ga0114996_11317673Not Available502Open in IMG/M
3300009409|Ga0114993_10874261Not Available645Open in IMG/M
3300009409|Ga0114993_11017308Not Available589Open in IMG/M
3300009706|Ga0115002_10214919All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Oceanospirillales → Saccharospirillaceae → Gynuella → Gynuella sunshinyii → Gynuella sunshinyii YC62581487Open in IMG/M
3300010883|Ga0133547_10389864All Organisms → cellular organisms → Bacteria2852Open in IMG/M
3300010883|Ga0133547_10545997All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → unclassified Desulfobacteraceae → Desulfobacteraceae bacterium IS32330Open in IMG/M
3300010883|Ga0133547_10983974Not Available1634Open in IMG/M
3300010883|Ga0133547_11805244Not Available1130Open in IMG/M
3300020272|Ga0211566_1026663All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria1361Open in IMG/M
3300022225|Ga0187833_10074784Not Available2245Open in IMG/M
(restricted) 3300022912|Ga0233430_1049006All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → unclassified Candidatus Pelagibacter → Candidatus Pelagibacter sp.2129Open in IMG/M
(restricted) 3300024243|Ga0233436_1080199All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium1116Open in IMG/M
(restricted) 3300024257|Ga0233442_1029861All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium1849Open in IMG/M
(restricted) 3300024261|Ga0233439_10075798All Organisms → cellular organisms → Bacteria → Proteobacteria → Candidatus Lambdaproteobacteria → Candidatus Lambdaproteobacteria bacterium1807Open in IMG/M
(restricted) 3300024324|Ga0233443_1043681Not Available1938Open in IMG/M
3300025183|Ga0208700_1015219Not Available1063Open in IMG/M
3300025188|Ga0207913_1003545Not Available3951Open in IMG/M
3300025188|Ga0207913_1019667Not Available1183Open in IMG/M
3300025188|Ga0207913_1025388Not Available954Open in IMG/M
3300025197|Ga0207919_133804Not Available501Open in IMG/M
3300025221|Ga0208336_1004349All Organisms → cellular organisms → Bacteria3456Open in IMG/M
3300025221|Ga0208336_1022604Not Available1076Open in IMG/M
3300025221|Ga0208336_1041329Not Available704Open in IMG/M
3300025232|Ga0208571_1017463All Organisms → Viruses → Predicted Viral1148Open in IMG/M
3300025232|Ga0208571_1039408Not Available612Open in IMG/M
3300025234|Ga0208837_1017604Not Available1116Open in IMG/M
3300025452|Ga0209046_1021697All Organisms → cellular organisms → Bacteria → Proteobacteria → Candidatus Lambdaproteobacteria → Candidatus Lambdaproteobacteria bacterium1479Open in IMG/M
3300025456|Ga0209776_1022546Not Available1481Open in IMG/M
3300025456|Ga0209776_1066932Not Available670Open in IMG/M
3300025622|Ga0209264_1025368Not Available1774Open in IMG/M
3300025622|Ga0209264_1055291All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiales genera incertae sedis → Methylibium → unclassified Methylibium → Methylibium sp. Root12721067Open in IMG/M
3300025622|Ga0209264_1113451Not Available675Open in IMG/M
3300025662|Ga0209664_1065223All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiales genera incertae sedis → Methylibium → unclassified Methylibium → Methylibium sp.1078Open in IMG/M
3300025727|Ga0209047_1043374All Organisms → Viruses → Predicted Viral1804Open in IMG/M
3300026080|Ga0207963_1090971Not Available675Open in IMG/M
3300026080|Ga0207963_1117743All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium552Open in IMG/M
3300026108|Ga0208391_1018819Not Available1974Open in IMG/M
3300026119|Ga0207966_1022784All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → Acidimicrobiaceae → unclassified Acidimicrobiaceae → Acidimicrobiaceae bacterium1880Open in IMG/M
3300026188|Ga0208274_1031196All Organisms → cellular organisms → Bacteria → Nitrospinae/Tectomicrobia group → Nitrospinae → unclassified Nitrospinota → Nitrospinae bacterium SCGC AAA008-D051485Open in IMG/M
3300026264|Ga0207991_1071336Not Available920Open in IMG/M
3300027685|Ga0209554_1022438Not Available2657Open in IMG/M
3300027685|Ga0209554_1072042Not Available1193Open in IMG/M
3300027700|Ga0209445_1101644Not Available876Open in IMG/M
3300027839|Ga0209403_10154892Not Available1414Open in IMG/M
3300028190|Ga0257108_1221803Not Available531Open in IMG/M
3300031639|Ga0302117_10008438All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria5150Open in IMG/M
3300031801|Ga0310121_10459244All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium712Open in IMG/M
3300031802|Ga0310123_10427500Not Available847Open in IMG/M
3300031804|Ga0310124_10162220Not Available1381Open in IMG/M
3300031804|Ga0310124_10605990Not Available630Open in IMG/M
3300031811|Ga0310125_10067500All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium1896Open in IMG/M

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).



 ⦗Top⦘

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
MarineEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Marine36.19%
Hydrothermal Vent PlumeEnvironmental → Aquatic → Marine → Hydrothermal Vents → Unclassified → Hydrothermal Vent Plume16.19%
Deep OceanEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean11.43%
Black Smokers Hydrothermal PlumeEnvironmental → Aquatic → Marine → Hydrothermal Vents → Black Smokers → Black Smokers Hydrothermal Plume7.62%
MarineEnvironmental → Aquatic → Marine → Unclassified → Unclassified → Marine6.67%
MarineEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Marine5.71%
MarineEnvironmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine5.71%
SeawaterEnvironmental → Aquatic → Marine → Inlet → Unclassified → Seawater4.76%
MarineEnvironmental → Aquatic → Marine → Oceanic → Aphotic Zone → Marine2.86%
SeawaterEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Seawater0.95%
MarineEnvironmental → Aquatic → Marine → Coastal → Unclassified → Marine0.95%
Diffuse Hydrothermal FluidEnvironmental → Aquatic → Marine → Hydrothermal Vents → Diffuse Flow → Diffuse Hydrothermal Fluid0.95%

Visualization
Powered by ApexCharts



Associated Samples

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Taxon OIDSample NameHabitat TypeIMG/M Link
3300001459Hydrothermal vent plume microbial communities from the Mid Cayman Rise - All Sites - lt1kEnvironmentalOpen in IMG/M
3300001587Marine microbial communities from the Deep Atlantic Ocean - MP2634EnvironmentalOpen in IMG/M
3300001676Black smokers hydrothermal plume microbial communities from Tui Malila, Lau Basin, Pacific OceanEnvironmentalOpen in IMG/M
3300001678Black smokers hydrothermal plume microbial communities from Mariner, Lau Basin, Pacific Ocean -IDBAEnvironmentalOpen in IMG/M
3300001680Black smokers hydrothermal plume microbial communities from Kilo Moana, Pacific OceanEnvironmentalOpen in IMG/M
3300001681Black smokers hydrothermal plume microbial communities from Abe, Lau Basin, Pacific Ocean - IDBAEnvironmentalOpen in IMG/M
3300001683Hydrothermal vent plume microbial communities from Guaymas Basin, Gulf of California - IDBA assemblyEnvironmentalOpen in IMG/M
3300001763Hydrothermal vent plume microbial communities from the Mid Cayman Rise - Beebe Supr51EnvironmentalOpen in IMG/M
3300001768Hydrothermal vent plume microbial communities from the Mid Cayman Rise - Deep Background Supr62EnvironmentalOpen in IMG/M
3300001769Hydrothermal vent plume microbial communities from the Mid Cayman Rise - Shallow Background Supr60EnvironmentalOpen in IMG/M
3300001776Hydrothermal vent plume microbial communities from the Mid Cayman Rise - Vondamm Supr47EnvironmentalOpen in IMG/M
3300001780Hydrothermal vent plume microbial communities from the Mid Cayman Rise - Vondamm Supr46EnvironmentalOpen in IMG/M
3300001781Hydrothermal vent plume microbial communities from the Mid Cayman Rise - Deep SitesEnvironmentalOpen in IMG/M
3300001783Hydrothermal vent plume microbial communities from the Mid Cayman Rise - Vondamm SitesEnvironmentalOpen in IMG/M
3300001840Hydrothermal vent plume microbial communities from the Mid Cayman Rise - Shallow Sites - gte1kb - lt4kbEnvironmentalOpen in IMG/M
3300001845Hydrothermal vent plume microbial communities from the Mid Cayman Rise - Shallow Sites - lt1kbEnvironmentalOpen in IMG/M
3300002919Marine microbial communities from the Southern Atlantic Ocean, analyzing organic carbon cycling - Bottom_A/KNORR_S2/LVEnvironmentalOpen in IMG/M
3300002965Marine microbial communities from the Southern Atlantic Ocean, analyzing organic carbon cycling - NADW_A/KNORR_S2/LVEnvironmentalOpen in IMG/M
3300004111Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI037_S2LV_200m_DNAEnvironmentalOpen in IMG/M
3300004274Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI075_LV_DNA_120mEnvironmentalOpen in IMG/M
3300004277Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI075_LV_DNA_200mEnvironmentalOpen in IMG/M
3300004278Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI075_LV_DNA_150mEnvironmentalOpen in IMG/M
3300005399Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP2014F14-07SV275EnvironmentalOpen in IMG/M
3300005594Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201302SV82EnvironmentalOpen in IMG/M
3300005953Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Knorr_S23_td_Bottom_ad_3770_LV_AEnvironmentalOpen in IMG/M
3300006002Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Knorr_S7_td_NADW_ad_2505m_LV_AEnvironmentalOpen in IMG/M
3300006013Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Knorr_S23_td_NADW_ad_2500m_LV_BEnvironmentalOpen in IMG/M
3300006080Microbial communities in diffuse hydrothermal fluids of Manus Basin, Bismarck Sea ? fluid EEnvironmentalOpen in IMG/M
3300006166Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201302SV91EnvironmentalOpen in IMG/M
3300006304Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT238_1_1000mEnvironmentalOpen in IMG/M
3300006325Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT238_1_0500mEnvironmentalOpen in IMG/M
3300006331Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT233_1_1000mEnvironmentalOpen in IMG/M
3300006900Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Knorr_S15_td_Bottom_ad_5009_LV_AEnvironmentalOpen in IMG/M
3300008629Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela, November cruise - 200m, 2.7-0.2umEnvironmentalOpen in IMG/M
3300009173Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB4_134EnvironmentalOpen in IMG/M
3300009409Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB2_150EnvironmentalOpen in IMG/M
3300009706Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB11_86EnvironmentalOpen in IMG/M
3300010883western Arctic Ocean co-assemblyEnvironmentalOpen in IMG/M
3300020272Marine microbial communities from Tara Oceans - TARA_B100001971 (ERX556120-ERR599127)EnvironmentalOpen in IMG/M
3300022225Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP2014_SV_400_PacBio MetaG (Illumina Assembly)EnvironmentalOpen in IMG/M
3300022912 (restricted)Seawater microbial communities from Saanich Inlet, British Columbia, Canada - SI_118_April2016_150_MGEnvironmentalOpen in IMG/M
3300024243 (restricted)Seawater microbial communities from Saanich Inlet, British Columbia, Canada - SI_122_August2016_150_MGEnvironmentalOpen in IMG/M
3300024257 (restricted)Seawater microbial communities from Saanich Inlet, British Columbia, Canada - SI_123_September2016_150_MGEnvironmentalOpen in IMG/M
3300024261 (restricted)Seawater microbial communities from Saanich Inlet, British Columbia, Canada - SI_123_September2016_100_MGEnvironmentalOpen in IMG/M
3300024324 (restricted)Seawater microbial communities from Saanich Inlet, British Columbia, Canada - SI_123_September2016_200_MGEnvironmentalOpen in IMG/M
3300025183Marine microbial communities from the Deep Pacific Ocean - MP2016 (SPAdes)EnvironmentalOpen in IMG/M
3300025188Marine microbial communities from the Deep Atlantic Ocean - MP2913 (SPAdes)EnvironmentalOpen in IMG/M
3300025197Marine microbial communities from the Deep Atlantic Ocean - MP0262 (SPAdes)EnvironmentalOpen in IMG/M
3300025221Marine microbial communities from the Deep Atlantic Ocean - MP0372 (SPAdes)EnvironmentalOpen in IMG/M
3300025232Marine microbial communities from the Deep Atlantic Ocean - MP0103 (SPAdes)EnvironmentalOpen in IMG/M
3300025234Marine microbial communities from the Deep Atlantic Ocean - MP0327 (SPAdes)EnvironmentalOpen in IMG/M
3300025452Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI073_LV_200m_DNA (SPAdes)EnvironmentalOpen in IMG/M
3300025456Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI074_LV_10m_DNA (SPAdes)EnvironmentalOpen in IMG/M
3300025622Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI075_LV_DNA_150m (SPAdes)EnvironmentalOpen in IMG/M
3300025662Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI073_LV_150m_DNA (SPAdes)EnvironmentalOpen in IMG/M
3300025727Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI073_LV_165m_DNA (SPAdes)EnvironmentalOpen in IMG/M
3300026080Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Knorr_S15_td_NADW_ad_2500m_LV_A (SPAdes)EnvironmentalOpen in IMG/M
3300026108Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Knorr_S23_td_Bottom_ad_3770_LV_A (SPAdes)EnvironmentalOpen in IMG/M
3300026119Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Knorr_S23_td_NADW_ad_2500m_LV_B (SPAdes)EnvironmentalOpen in IMG/M
3300026188Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201306SV43 (SPAdes)EnvironmentalOpen in IMG/M
3300026264Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP2014F14-07SV275 (SPAdes)EnvironmentalOpen in IMG/M
3300027685Marine microbial communities from the Southern Atlantic Ocean, analyzing organic carbon cycling - Bottom_A/KNORR_S2/LV (SPAdes)EnvironmentalOpen in IMG/M
3300027700Marine microbial communities from the Southern Atlantic Ocean, analyzing organic carbon cycling - NADW_A/KNORR_S2/LV (SPAdes)EnvironmentalOpen in IMG/M
3300027839Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB11_86 (SPAdes)EnvironmentalOpen in IMG/M
3300028190Marine microbial communities from Northeast Subartic Pacific Ocean, Canada - LP_J_2011_P26_1000mEnvironmentalOpen in IMG/M
3300031639Marine microbial communities from Western Arctic Ocean, Canada - AG5_32.2EnvironmentalOpen in IMG/M
3300031801Marine microbial communities from Western Arctic Ocean, Canada - CB27_Tmax_986EnvironmentalOpen in IMG/M
3300031802Marine microbial communities from Western Arctic Ocean, Canada - CB6_AW_1057EnvironmentalOpen in IMG/M
3300031804Marine microbial communities from Western Arctic Ocean, Canada - CB11b_AW_Bot5EnvironmentalOpen in IMG/M
3300031811Marine microbial communities from Western Arctic Ocean, Canada - CB11b_Tmax_Bot8EnvironmentalOpen in IMG/M

Geographical Distribution
Zoom:     Powered by OpenStreetMap



 ⦗Top⦘

Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID Sample Taxon ID Habitat Sequence
MCRcombined_138382113300001459Hydrothermal Vent PlumeDFRVDWASFELIDGDFHSHSFGEGVKRNDLMLEGN*
JGI12001J15744_101695623300001587Deep OceanHITISVDFRVDWASFELIDGDFHSHSFGEGVKRNDLMLEGN*
TuiMalila_100877013300001676Black Smokers Hydrothermal PlumeSHITISVDFRVDWASFELIDGDFHSHSFGERGDWNDSMLDEN*
TuiMalila_103259933300001676Black Smokers Hydrothermal PlumeHITISVDFRVDWASFELIDGDFHSHSFGVRVKRNDSMLEKN*
Mariner_101335313300001678Black Smokers Hydrothermal PlumeHITISVDFRVDWASFELIDGDFHSHSFGGRLKRNDSMLEEN*
Mariner_104038513300001678Black Smokers Hydrothermal PlumeTISVDFRVDWASFELIDGDFHSHSFGGSVKGNDSMLEEN*
KiloMoana_1003230453300001680Black Smokers Hydrothermal PlumeTISVDFRVDWASFELIDGDFHSHSFGGSVKWNDSMLEEN*
KiloMoana_1006608633300001680Black Smokers Hydrothermal PlumeVSHITISVDFRVDWASFELIDGDFHSHSFGGRLKWNDSMLDEN*
KiloMoana_1007358033300001680Black Smokers Hydrothermal PlumeVDFRVDWASFELIDGDFHSHSFGGSVKRNDLMLEEN*
Abe_1003874043300001681Black Smokers Hydrothermal PlumeSHITISVDFRVDWASFELIDGDFHSHSFGGSVKRNDLMLEEN*
GBIDBA_1006158123300001683Hydrothermal Vent PlumeVSHITISVDFRVDWASFELIDGDFHSHSFGERVDWNDSMLEEN*
GBIDBA_1010723713300001683Hydrothermal Vent PlumeVDFRVDWASFELIDGDFHSHSFGGSVKRNDSMLEEN*
supr51_100213253300001763Hydrothermal Vent PlumeVSHITISVDFRVDWASFELIDGDFHSHSFGGSVKGNDSMLEEN*
supr51_100879513300001763Hydrothermal Vent PlumeVSHITISVDFRVDWASFELIDGDFHSHSFGESVKRNDSMLEEN*
supr62_100374053300001768Hydrothermal Vent PlumeSHITISVDFRVDWASFELIDGDFHSHSFGGIVKRNDSMLEEN*
supr60_100333573300001769Hydrothermal Vent PlumeHITISVDFRVDWASFELIDGDFHSHSFGGSVKGNDSMLEEN*
supr47_106062013300001776Hydrothermal Vent PlumeHITISVDFRVDWASFELIDGDFHSHSFGGSLKRNDSMLEEN*
supr46_101662713300001780Hydrothermal Vent PlumeVSHITISVDFRVDWASFELIDGDFHSHSFGGRVKRNDLMLEKN*
Deep_101144513300001781Hydrothermal Vent PlumeVSHITISVDFRVDWAGFELIDWDFHSHSFGGRVKWNDSMLEDN*
Deep_101948713300001781Hydrothermal Vent PlumeHITISVDFRVDWASFELIDGDFHSHSFGGSVKRNDSMLDEN*
Deep_103391213300001781Hydrothermal Vent PlumeVDFRVDWASFELIDGDFHSHSFGGRVKRNDLMLEDN*
Deep_105484413300001781Hydrothermal Vent PlumeSHITISVDFRVDWASFELIDGDFHSHSFGEGVKRNDLMLEGN*
Vondamm_1009892013300001783Hydrothermal Vent PlumeSHITISVDFRVDWASFELIDGDFHSHSFGESVKRNDSMLEEN*
Vondamm_1011582023300001783Hydrothermal Vent PlumeVSHITISVDFRVDWASFELIDGDFHSHSFGGRVKRNDLMLEEN*
shallow_107706333300001840Hydrothermal Vent PlumeTISVDFRVDWASFELIDGDFHSHSFGGSVKRNDLMLDEN*
shallow_109658723300001845Hydrothermal Vent PlumeHITISVDFRVDWASFELIDGDFHSHSFGGRVKRNDLMLEDN*
JGI26061J44794_100643753300002919MarineITISVDFRVDWASFELIDGDFHSHSFGGSVKRNDSMLEEN*
JGI26061J44794_101066913300002919MarineSHITISVDFRVDWASFELIDGDFHSHSFGGRLKRNDSMLDDN*
JGI26061J44794_104638413300002919MarineTISVDFRVDWASFELIDGDFHSHSFGGRVKRNDSMLKEN*
JGI26063J44948_104400013300002965MarineSHITISVDFRVDWASFELIDGDFHSHSFGGSVKWNDLMLEEN*
Ga0008651_1019811423300004111MarineVSHITISVDFRVDWASFELIDGDFHSHSFGGRVKGNDSMLEGN*
Ga0066607_103005623300004274MarineHITISVDFRVDWASFELINGDFHSHSFGGRVDWNDSMLEKN*
Ga0066611_1032692523300004277MarineTISVDFRVDWASFELINGDFHSHSFGGRVDWNDSMLEKN*
Ga0066609_1003068313300004278MarineHITISVDFRVDWASFELIDGDFHSHSFGGSVKQNDLMLVKD*
Ga0066860_1017991323300005399MarineSHITISVDFRVDWASFELIYGDFHSHSFGERVDWNDSMLDEN*
Ga0066839_1016743713300005594MarineVDFRVDWASFELIDGDFHSHSFGGRVKRNDYIVP*
Ga0066383_1005268713300005953MarineSHITISVDFRVDWASFELIDGDFHSHSFGGSVKRNDSMLDDN*
Ga0066383_1019173033300005953MarineITISVDFRVDWASFELIDWDFHSHSFGGRVKRNDSMLEEN*
Ga0066383_1020900313300005953MarineITISVDFRVDWTSFELIDGDFQSHSFGVSVKRNDLMLDEN*
Ga0066383_1021444923300005953MarineDFRVDWASFELIDGDFHSHSFGGSVKRNDSMLDEN*
Ga0066368_1024298333300006002MarineDFRVDWACFELIDGDFHSHSFGGSVKRNDLMLEEN*
Ga0066382_1009426023300006013MarineVSHITISVYFRVDWASFELIDGDFHSHSFGGRLKWNDSMLDEN*
Ga0066382_1024934713300006013MarineISVDFRVDWASFELIDGDFHSHSFGGSVKRNDSMLDDN*
Ga0081602_116573433300006080Diffuse Hydrothermal FluidHITISVDFRVDWASFELIDGDFHSHSFGGSVKRNDLMLEEN*
Ga0066836_1064200223300006166MarineVDFRVDWASFELIDGDFHSHSFGVCVKRNDSMLEEN*
Ga0068504_104405313300006304MarineDFRVDWAGFKLIDWDFHSHSFGGCVKRNDSILEKN*
Ga0068501_153439813300006325MarineISISVDFRVDWTSFELIDGDFHSHSFGCRLKWNDSMLEEN*
Ga0068488_162342533300006331MarineITISVDFRVDWACIEKIYGDFHRHSFGGRVDWNDLMLEEN*
Ga0066376_1015849843300006900MarineAVSIYFSVYGTSFELIDRDLHSYSFVGSVKRNDLMLEEN*
Ga0066376_1042736223300006900MarineSHITISVDFRVDWASFESIDGDFHSHSFGGIVKRNDSMLEDN*
Ga0066376_1060582933300006900MarineVPINFSVYGTSFELIDWDFHSHSFGERVDWNDSMLDEN*
Ga0115658_102127163300008629MarineHITISVDFRVYWASFELIDGDFHSHSFGGSVDWNDLMLEKN*
Ga0114996_1023091213300009173MarineTISVDFRVDWASFELIDGDFHSHSFGGRVKRNDSMLEEN*
Ga0114996_1044148813300009173MarineVSHITISVDFRVDWAGFKLIDGDFHSYSFGGRVDWNDLMLEEN*
Ga0114996_1131767323300009173MarineHITISVDFRVDWAGFELIDWDFHSHSFGGRLKRNDSMLEEN*
Ga0114993_1087426123300009409MarineVSHITISVDFRVDWASFELIDGDFHSHSFGGSVKGNDSMLEDN*
Ga0114993_1101730823300009409MarineDFRVDWASFEKIDGDFHSHSFGGSVKGNDSLLEKN*
Ga0115002_1021491913300009706MarineTISVDFRVDWASFELIDGDFHSHSFGERVDWNDSMLEEN*
Ga0133547_1038986413300010883MarineVSHITISVDFRVDWASFELFYGDFHSHSFGGRVKWNDLMLEDN*
Ga0133547_1054599723300010883MarineVDFRVDWASFESIYGDFHSHSFGVCVKRNDLMLEEN*
Ga0133547_1098397413300010883MarineTISVDFRVDWASFEKIYGDFHSHSFGGIVKRNDSMLEEN*
Ga0133547_1180524413300010883MarineVSHITISVDFRVDWASFELIDGDFHSHFFGGSVKGNDSMLDDN*
Ga0211566_102666333300020272MarineISVDFRVDWASFELIDGDFHSHSFGERVDWNDLMLDEN
Ga0187833_1007478463300022225SeawaterVDFRVDWASFEKIDWDFHSHFFGGSVKRNDSMLDEN
(restricted) Ga0233430_104900613300022912SeawaterDFRVDWASFELIDGDFHSHSFGGRVKGNDSMLEGN
(restricted) Ga0233436_108019913300024243SeawaterISVDFRVDWASFELIDGDFHSHSFGGRVKRNDLMLEGN
(restricted) Ga0233442_102986113300024257SeawaterVSHITISVDFRVDWASFELIDGDFHSHSFGGRVKRIDSMLEEN
(restricted) Ga0233439_1007579833300024261SeawaterITISVDFRVDWASFELINGDFHSHSFGGRVDWNDLMLEEN
(restricted) Ga0233443_104368143300024324SeawaterSHITISVDFRVDWASFELIDGDFHSHSFGGRVKRIDSMLEEN
Ga0208700_101521923300025183Deep OceanITISVDFRIDWTSFELIDGDFHSHSFGGSVKRNDSMLENN
Ga0207913_100354513300025188Deep OceanSVDFRVDWASFELIDGDFHSHSFGGSVKGNDSMLEEN
Ga0207913_101966713300025188Deep OceanITISVDFRVDWAGFELIDGDFHSHSFGGRLKRNDLMLEDN
Ga0207913_102538813300025188Deep OceanISHITISVDFRVDWAGFELIDGDFHSHSFVGRLKRNDSKLEDN
Ga0207919_13380423300025197Deep OceanVSHITISVDFRVDWASFELIDGDFHSHSFGGSVKGNDSMLEEN
Ga0208336_100434913300025221Deep OceanSHITISVDFRVDWASFELIDGDFHSHSFGGSVKRNDLMLEEN
Ga0208336_102260423300025221Deep OceanSHITISVDFRVDWASFELIDGDFHSHSFGGSVKGNDSMLEEN
Ga0208336_104132913300025221Deep OceanVSHITISVDFRVDWASFELIDGDFHSHSFGESVKRNDSMLEEN
Ga0208571_101746313300025232Deep OceanTISVYFRVDWAGFKLIDGDFHSHSFGGRVKRNDSMLEEN
Ga0208571_103940813300025232Deep OceanSVDFRVDWASFELIDGDFHSHSFGEGVKRNDLMLEGN
Ga0208837_101760423300025234Deep OceanVSHITISVNFRVDWASFELIDGDFHRHSFGGRLKRNDLMLEEN
Ga0209046_102169723300025452MarineDFRVDWASFELINGDFHSHSFGGRVDWNDLMLEEN
Ga0209776_102254623300025456MarineTISVDFRVDWASFELINGDFHSHSFGGRVDWNDSMLEKN
Ga0209776_106693223300025456MarineHITISVDFRVDWASFELINGDFHSHSFGGRVDWNDLMLEEN
Ga0209264_102536833300025622MarineISVDFRVDWASFELINGDFHSHSFGGRVDWNDSMLEKN
Ga0209264_105529133300025622MarineITISVDFRVDWASFELIDGDFHSHSFGGSVKQNDLMLVKD
Ga0209264_111345113300025622MarineSHITICVDFRVDWAGFELIDGDFHSHSFGVCVKWNDSILEKN
Ga0209664_106522333300025662MarineISVDFRVDWASFELIDGDFHSHSFGGSVKGNDSMLVKD
Ga0209047_104337413300025727MarineITISVDFRVDWASFELIDGDFHSHSFGGRVKGNDSMLEEN
Ga0207963_109097113300026080MarineISVDFRVDWASFELIDGDFHSHSFGESVKRNDSMLEEN
Ga0207963_111774323300026080MarineSHITISVDFRVDWASFEKIDGDFHSHSFGGRLKRNDLMLEEN
Ga0208391_101881913300026108MarineVSHITISVDFRVDWASFELIDGDFHSHSFGGRVKRNDLMLEDN
Ga0207966_102278413300026119MarineVSHITISVDFRVDWASFELIDGDFHSHSFGGRVKRNDSMLEEN
Ga0208274_103119613300026188MarineHITISVDFRVDWASFEKIYGDFHSHSFGGRLKRNDSILEDN
Ga0207991_107133623300026264MarineVDFRVDWASFELIDGDFHSHSFGGSVDWNDLMLEDN
Ga0209554_102243813300027685MarineDFRVDWASFELIDGDFHSHSFGGRLKRNDSMLDDN
Ga0209554_107204213300027685MarineVSHITISVDFRVDWASFELIDGDFHSHSFGGRVDWNDSMLEEN
Ga0209445_110164413300027700MarineITISVNFRVDWASFELIDGDFHSHSFGGSVKGNDSMLDEN
Ga0209403_1015489213300027839MarineHITISVDFSVYGTSFELIDGDFHSHSFGGSVKRNDLMLEEN
Ga0257108_122180313300028190MarineVDFRVDWASFELIDGDFHSHSFGGRVKRNDLMLEEN
Ga0302117_1000843873300031639MarineDFRVDWAGFKLIDGDFHSHSFGVSVKRNDSMLEEN
Ga0310121_1045924423300031801MarineISVYFRVDWASFKLIDGDFHSHSFGGRVDWNDSMLDDN
Ga0310123_1042750013300031802MarineSHITISVDFRVDWASFKLIDGDFHSYSFGESVKRNDSILEKN
Ga0310124_1016222013300031804MarineISVDFRVDWASFELIYGDFHSHSFGGSLKRNDSMLEKN
Ga0310124_1060599013300031804MarineVSHITISVDFRVDWASFELIDGDFHSHSFGERVKWNDLMLEEN
Ga0310125_1006750013300031811MarineTISVDFRVDWASFDLIDGDFHSHSFVGRVKRNDLMLEEN


 ⦗Top⦘


© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.