NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300025197

3300025197: Marine microbial communities from the Deep Atlantic Ocean - MP0262 (SPAdes)



Overview

Basic Information
IMG/M Taxon OID3300025197 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0053074 | Gp0054753 | Ga0207919
Sample NameMarine microbial communities from the Deep Atlantic Ocean - MP0262 (SPAdes)
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size55173768
Sequencing Scaffolds11
Novel Protein Genes11
Associated Families11

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Thaumarchaeota incertae sedis → Candidatus Nitrosotenuis1
Not Available7
All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Marinimicrobia → Candidatus Marinimicrobia bacterium2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexi incertae sedis → SAR202 cluster → SAR202 cluster bacterium1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameDeep Ocean Microbial Communities From The Global Malaspina Expedition
TypeEnvironmental
TaxonomyEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Alternative Ecosystem Assignments
Environment Ontology (ENVO)marine biome → marine water body → sea water
Earth Microbiome Project Ontology (EMPO)Free-living → Saline → Water (saline)

Location Information
LocationSouth Atlantic Ocean
CoordinatesLat. (o)-3.03Long. (o)-27.33Alt. (m)N/ADepth (m)4002.04
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001651Metagenome / Metatranscriptome657Y
F010693Metagenome300Y
F014511Metagenome / Metatranscriptome262Y
F014899Metagenome / Metatranscriptome259Y
F016055Metagenome / Metatranscriptome250Y
F037770Metagenome167Y
F051204Metagenome144N
F076171Metagenome118N
F082562Metagenome113N
F089571Metagenome109N
F096028Metagenome105Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0207919_101022All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Thaumarchaeota incertae sedis → Candidatus Nitrosotenuis3355Open in IMG/M
Ga0207919_105123Not Available1621Open in IMG/M
Ga0207919_106193Not Available1465Open in IMG/M
Ga0207919_112164Not Available983Open in IMG/M
Ga0207919_113178All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Marinimicrobia → Candidatus Marinimicrobia bacterium933Open in IMG/M
Ga0207919_127068Not Available583Open in IMG/M
Ga0207919_128733Not Available560Open in IMG/M
Ga0207919_130732All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexi incertae sedis → SAR202 cluster → SAR202 cluster bacterium535Open in IMG/M
Ga0207919_132220All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Marinimicrobia → Candidatus Marinimicrobia bacterium517Open in IMG/M
Ga0207919_133610Not Available503Open in IMG/M
Ga0207919_133804Not Available501Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0207919_101022Ga0207919_1010226F037770PLAFNADTMVDLPEPGMPVRQTISFAKMKLFTDSSL
Ga0207919_105123Ga0207919_1051231F010693MIGFLIFGLVVLSTICLWILIEERKSWKFLIWFIPILLVIVTSTYVTYTSILGLPKVGIPEKGLYLRHYIDEPNWIYLWVLSKKNVPMSYQLVYSREKHNALEGVKGQAAEGAFMVLGEDESLGPGDGEGD
Ga0207919_106193Ga0207919_1061931F076171LNLSWFLTGEGEMLQENLDYTEKTILENYRKLPDEGKMGFEVRTNLYEKEYLEHKELMGNIVDVAMNNENKLPFMSWELYNCLQVLQNSRVNKIISIQKKPSKMAVFDTSELKSQLKSQLENTEADIQKLISLDAEYIKEFLT
Ga0207919_112164Ga0207919_1121641F014899MAEEEPIVDFGFSAVTADEYERDNTDGENTGGGGSASPEAFASMDSKIEQIMAALASKSDAPPDDFGFSQEKQDSLEEILTANSEKLDKILSLEQDEERAQTTADILAQLNDATGESRTSSKKAGEVVGKQDEIMKFLESMSPKIDKILKLESLEALLEGTSGKLDDLTASQVQSVTAEPPDLTPIL
Ga0207919_113178Ga0207919_1131781F089571LKKVPPKIYNYDSTPQTWEERKEQAAHEYWRIRAHAELDRLGISVTKYDPTTSDVPLFIKLEGGRIRTDFDPFTPLARGEVIDIAGLWNPSKGDNPTLNIHGKLFLQITMKLEDQKKLFSQYKQRNYIPIPKDFQRILKFRDSLDVISIGMHDYNRDNTHIWPGIPHSFLYAPPGTHYDPYNPPIIHGDGFPYIQRGHLTLARREIPMTNAEYENLIKHIDKLEGHGPIKVSYDMGDGIIETVTFEEVWLKINPYNGEPTRILRKISLLKK
Ga0207919_127068Ga0207919_1270682F016055MEEEFHIEKHGSLRKSKRLINKRERLQIKKYLKGDSPEDFVDENDDTD
Ga0207919_128733Ga0207919_1287332F014511MGMKNVTIKTVVNEKFRFKAMDLNGSVFVFEDKPSIPIDIACDTWDVKTGEILQISPPTPMSTSSLDLGDWRESLIELDDEVILD
Ga0207919_130732Ga0207919_1307321F001651VALQNGKKIALAQRRHRVIQAKIEGRSEAQIAEQEGVVQYTIWKDIRAYLGEVRREDKAAVQAEYDLQRARYERLLLRWWDHAIGEDSDHAARATGIVLDILRRLDTIGGLIPEKPLIQFQQQNVMVGGVTFADLLREA
Ga0207919_132220Ga0207919_1322201F082562ATEKTFVREYTYQASDSSNNYFFNLELSLIHPILGGFGGTVGIEKNHFSYGLNSFGTKLNHMTKHYLLENAEELAVYNWGVELYSDYYFKQNHTGLFLGLILSLNGFRFNDIPNPQTILVLYSAPRIGYRLCLPKKLKSFYFQYSLTTHFKVWDDEKKFLYREIDTKSIFLL
Ga0207919_133610Ga0207919_1336101F051204MKVKIHSKHVDFKLKAAIHSMCGYAISSLGISNRIAKNLNLTIHMGHHETEGEARVAKDANRYRPRDFKINLDHHRMEKDDYNRSLEDTEWGHRVLRTLAHELVHVKQYIVGELSWRDAGLLWKGVNHNPKNLLHYYELPYE
Ga0207919_133804Ga0207919_1338042F096028VSHITISVDFRVDWASFELIDGDFHSHSFGGSVKGNDSMLEEN
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