NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome Family F096732

Metagenome Family F096732

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F096732
Family Type Metagenome
Number of Sequences 104
Average Sequence Length 41 residues
Representative Sequence MEVEHDETLKHRIEEVDETPHDAEAMEMQGRKRARRLMVK
Number of Associated Samples 5
Number of Associated Scaffolds 100

Quality Assessment
Transcriptomic Evidence No
Most common taxonomic group Eukaryota
% of genes with valid RBS motifs 20.19 %
% of genes near scaffold ends (potentially truncated) 0.00 %
% of genes from short scaffolds (< 2000 bps) 2.88 %
Associated GOLD sequencing projects 3
AlphaFold2 3D model prediction Yes
3D model pTM-score0.28

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Eukaryota (81.731 % of family members)
NCBI Taxonomy ID 2759
Taxonomy All Organisms → cellular organisms → Eukaryota

Most Common Ecosystem
GOLD Ecosystem Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Root Nodules
(89.423 % of family members)
Environment Ontology (ENVO) Unclassified
(100.000 % of family members)
Earth Microbiome Project Ontology (EMPO) Host-associated → Plant → Plant rhizosphere
(100.000 % of family members)



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Multiple Sequence Alignments

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 47.06%    β-sheet: 0.00%    Coil/Unstructured: 52.94%
Feature Viewer
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.28
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 100 Family Scaffolds
PF00665rve 12.00
PF03732Retrotrans_gag 9.00
PF07727RVT_2 9.00
PF14223Retrotran_gag_2 8.00
PF00078RVT_1 7.00
PF13976gag_pre-integrs 3.00
PF05699Dimer_Tnp_hAT 2.00
PF00098zf-CCHC 2.00
PF02992Transposase_21 2.00
PF13963Transpos_assoc 2.00
PF13456RVT_3 2.00
PF00773RNB 1.00
PF12776Myb_DNA-bind_3 1.00
PF02892zf-BED 1.00
PF13359DDE_Tnp_4 1.00
PF12457TIP_N 1.00
PF06480FtsH_ext 1.00
PF00179UQ_con 1.00
PF00854PTR2 1.00
PF13952DUF4216 1.00
PF00403HMA 1.00
PF10536PMD 1.00
PF13650Asp_protease_2 1.00
PF14227Obsolete Pfam Family 1.00
PF13844Glyco_transf_41 1.00
PF10551MULE 1.00
PF03004Transposase_24 1.00
PF07714PK_Tyr_Ser-Thr 1.00
PF13966zf-RVT 1.00
PF00476DNA_pol_A 1.00

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 100 Family Scaffolds
COG2801Transposase InsO and inactivated derivativesMobilome: prophages, transposons [X] 12.00
COG2826Transposase and inactivated derivatives, IS30 familyMobilome: prophages, transposons [X] 12.00
COG3316Transposase (or an inactivated derivative), DDE domainMobilome: prophages, transposons [X] 12.00
COG4584TransposaseMobilome: prophages, transposons [X] 12.00
COG0515Serine/threonine protein kinaseSignal transduction mechanisms [T] 4.00
COG0465ATP-dependent Zn proteasesPosttranslational modification, protein turnover, chaperones [O] 1.00
COG0557Exoribonuclease RTranscription [K] 1.00
COG0749DNA polymerase I, 3'-5' exonuclease and polymerase domainsReplication, recombination and repair [L] 1.00
COG2217Cation-transporting P-type ATPaseInorganic ion transport and metabolism [P] 1.00
COG2608Copper chaperone CopZInorganic ion transport and metabolism [P] 1.00
COG3104Dipeptide/tripeptide permeaseAmino acid transport and metabolism [E] 1.00
COG4776Exoribonuclease IITranscription [K] 1.00
COG5078Ubiquitin-protein ligasePosttranslational modification, protein turnover, chaperones [O] 1.00


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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
All OrganismsrootAll Organisms82.69 %
UnclassifiedrootN/A17.31 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300006941|Ga0099825_1000072All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida64990Open in IMG/M
3300006941|Ga0099825_1000134All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta57130Open in IMG/M
3300006941|Ga0099825_1001286All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta31510Open in IMG/M
3300006941|Ga0099825_1001583All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta29265Open in IMG/M
3300006941|Ga0099825_1001760All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta28075Open in IMG/M
3300006941|Ga0099825_1001878All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta27347Open in IMG/M
3300006941|Ga0099825_1001932All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta27047Open in IMG/M
3300006941|Ga0099825_1002225All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Fabales → Fabaceae → Papilionoideae → 50 kb inversion clade → NPAAA clade → indigoferoid/millettioid clade → Phaseoleae → Vigna25717Open in IMG/M
3300006941|Ga0099825_1002390Not Available24918Open in IMG/M
3300006941|Ga0099825_1002398All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta24892Open in IMG/M
3300006941|Ga0099825_1002581All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida24102Open in IMG/M
3300006941|Ga0099825_1003558Not Available20710Open in IMG/M
3300006941|Ga0099825_1003732Not Available20202Open in IMG/M
3300006941|Ga0099825_1004616All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta17995Open in IMG/M
3300006941|Ga0099825_1005064All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta17079Open in IMG/M
3300006941|Ga0099825_1005734All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta15827Open in IMG/M
3300006941|Ga0099825_1005909All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta15542Open in IMG/M
3300006941|Ga0099825_1006803All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida14143Open in IMG/M
3300006941|Ga0099825_1008523All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta12094Open in IMG/M
3300006941|Ga0099825_1009019All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Fabales → Fabaceae → Papilionoideae → 50 kb inversion clade → NPAAA clade → indigoferoid/millettioid clade → Phaseoleae11562Open in IMG/M
3300006941|Ga0099825_1009019All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Fabales → Fabaceae → Papilionoideae → 50 kb inversion clade → NPAAA clade → indigoferoid/millettioid clade → Phaseoleae11562Open in IMG/M
3300006941|Ga0099825_1009213All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta11357Open in IMG/M
3300006941|Ga0099825_1009849All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida10690Open in IMG/M
3300006941|Ga0099825_1010193All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Fabales → Fabaceae → Papilionoideae → 50 kb inversion clade → NPAAA clade → indigoferoid/millettioid clade → Phaseoleae10380Open in IMG/M
3300006941|Ga0099825_1012162All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta8826Open in IMG/M
3300006941|Ga0099825_1013597Not Available7863Open in IMG/M
3300006941|Ga0099825_1015866All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Fabales → Fabaceae → Papilionoideae → 50 kb inversion clade → NPAAA clade → indigoferoid/millettioid clade → Phaseoleae → Phaseolus → Phaseolus vulgaris6636Open in IMG/M
3300006941|Ga0099825_1016228All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta6459Open in IMG/M
3300006941|Ga0099825_1017402Not Available5884Open in IMG/M
3300006941|Ga0099825_1017867All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Fabales → Fabaceae → Papilionoideae → 50 kb inversion clade → NPAAA clade → indigoferoid/millettioid clade → Phaseoleae → Glycine → Glycine subgen. Soja → Glycine max5677Open in IMG/M
3300006941|Ga0099825_1018190Not Available5542Open in IMG/M
3300006941|Ga0099825_1019924All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta4886Open in IMG/M
3300006941|Ga0099825_1021105All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → rosids incertae sedis → Vitales → Vitaceae → Viteae → Vitis → Vitis vinifera4488Open in IMG/M
3300006941|Ga0099825_1023302All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Fabales → Fabaceae → Papilionoideae → 50 kb inversion clade → NPAAA clade → indigoferoid/millettioid clade → Phaseoleae → Glycine → Glycine subgen. Soja → Glycine max3822Open in IMG/M
3300006941|Ga0099825_1023398All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Lactobacillales → Lactobacillaceae → Furfurilactobacillus → Furfurilactobacillus rossiae3793Open in IMG/M
3300006941|Ga0099825_1023921Not Available3661Open in IMG/M
3300006941|Ga0099825_1026119All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Fabales → Fabaceae → Papilionoideae → 50 kb inversion clade → NPAAA clade → indigoferoid/millettioid clade → Phaseoleae → Glycine → Glycine subgen. Soja → Glycine max3156Open in IMG/M
3300006941|Ga0099825_1032371All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta2127Open in IMG/M
3300006941|Ga0099825_1034532Not Available1874Open in IMG/M
3300006941|Ga0099825_1041197Not Available1336Open in IMG/M
3300006941|Ga0099825_1049813Not Available928Open in IMG/M
3300006942|Ga0099824_1003690All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta22307Open in IMG/M
3300006942|Ga0099824_1005355All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta18098Open in IMG/M
3300006942|Ga0099824_1011950Not Available9632Open in IMG/M
3300006942|Ga0099824_1019486All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Fabales → Fabaceae → Papilionoideae → 50 kb inversion clade → NPAAA clade → indigoferoid/millettioid clade → Phaseoleae5275Open in IMG/M
3300006942|Ga0099824_1021209All Organisms → cellular organisms → Eukaryota4588Open in IMG/M
3300009763|Ga0123340_1000247All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta31237Open in IMG/M
3300009763|Ga0123340_1000947All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta22496Open in IMG/M
3300009763|Ga0123340_1006828All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Fabales → Fabaceae → Papilionoideae → 50 kb inversion clade → NPAAA clade → indigoferoid/millettioid clade → Phaseoleae10885Open in IMG/M
3300009763|Ga0123340_1017513All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Fabales → Fabaceae5931Open in IMG/M
3300009763|Ga0123340_1017930All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Fabales → Fabaceae → Papilionoideae → 50 kb inversion clade → NPAAA clade → indigoferoid/millettioid clade → Phaseoleae → Glycine → Glycine subgen. Soja → Glycine max5818Open in IMG/M
3300009763|Ga0123340_1021015Not Available5023Open in IMG/M
3300009763|Ga0123340_1021633All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta4884Open in IMG/M
3300009763|Ga0123340_1022617All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta4678Open in IMG/M
3300009763|Ga0123340_1025824All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Fabales → Fabaceae → Papilionoideae → 50 kb inversion clade → NPAAA clade → indigoferoid/millettioid clade → Phaseoleae → Glycine → Glycine subgen. Soja → Glycine max4050Open in IMG/M
3300009763|Ga0123340_1032886Not Available2968Open in IMG/M
3300009763|Ga0123340_1039131All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Fabales → Fabaceae → Papilionoideae → 50 kb inversion clade → NPAAA clade → indigoferoid/millettioid clade → Phaseoleae2305Open in IMG/M
3300027361|Ga0209489_100223All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida94596Open in IMG/M
3300027361|Ga0209489_100293All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta87364Open in IMG/M
3300027361|Ga0209489_100356All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Fabales → Fabaceae81290Open in IMG/M
3300027361|Ga0209489_100441All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta76561Open in IMG/M
3300027361|Ga0209489_100458All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida75943Open in IMG/M
3300027361|Ga0209489_100595All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta69816Open in IMG/M
3300027361|Ga0209489_100608All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta69381Open in IMG/M
3300027361|Ga0209489_100664All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida66954Open in IMG/M
3300027361|Ga0209489_100851All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta60995Open in IMG/M
3300027361|Ga0209489_101244All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta52079Open in IMG/M
3300027361|Ga0209489_101478All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta48311Open in IMG/M
3300027361|Ga0209489_102524All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta37138Open in IMG/M
3300027361|Ga0209489_102606All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Fabales → Fabaceae → Papilionoideae → 50 kb inversion clade → NPAAA clade → indigoferoid/millettioid clade → Phaseoleae → Phaseolus → Phaseolus vulgaris36385Open in IMG/M
3300027361|Ga0209489_103110All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta32770Open in IMG/M
3300027361|Ga0209489_103259All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta31907Open in IMG/M
3300027361|Ga0209489_103259All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta31907Open in IMG/M
3300027361|Ga0209489_103329All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Fabales → Fabaceae → Papilionoideae → 50 kb inversion clade → NPAAA clade → indigoferoid/millettioid clade → Phaseoleae31490Open in IMG/M
3300027361|Ga0209489_103517All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta30353Open in IMG/M
3300027361|Ga0209489_103797All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta28844Open in IMG/M
3300027361|Ga0209489_103851All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta28617Open in IMG/M
3300027361|Ga0209489_104056All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta27524Open in IMG/M
3300027361|Ga0209489_104244All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta26602Open in IMG/M
3300027361|Ga0209489_104244All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta26602Open in IMG/M
3300027361|Ga0209489_104382All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta26090Open in IMG/M
3300027361|Ga0209489_104455All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta25763Open in IMG/M
3300027361|Ga0209489_105562All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Fabales → Fabaceae → Papilionoideae → 50 kb inversion clade → NPAAA clade → indigoferoid/millettioid clade → Phaseoleae → Cajanus → Cajanus cajan21656Open in IMG/M
3300027361|Ga0209489_105585All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Fabales → Fabaceae → Papilionoideae → 50 kb inversion clade → NPAAA clade → indigoferoid/millettioid clade → Phaseoleae21566Open in IMG/M
3300027361|Ga0209489_105985Not Available20160Open in IMG/M
3300027361|Ga0209489_106943All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Fabales → Fabaceae → Papilionoideae → 50 kb inversion clade → NPAAA clade → indigoferoid/millettioid clade → Phaseoleae17511Open in IMG/M
3300027361|Ga0209489_106986All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Fabales → Fabaceae → Papilionoideae → 50 kb inversion clade → NPAAA clade → indigoferoid/millettioid clade → Phaseoleae17417Open in IMG/M
3300027361|Ga0209489_107548All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta16029Open in IMG/M
3300027361|Ga0209489_107763All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Fabales → Fabaceae → Papilionoideae → 50 kb inversion clade → NPAAA clade → indigoferoid/millettioid clade → Phaseoleae15539Open in IMG/M
3300027361|Ga0209489_107763All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Fabales → Fabaceae → Papilionoideae → 50 kb inversion clade → NPAAA clade → indigoferoid/millettioid clade → Phaseoleae15539Open in IMG/M
3300027361|Ga0209489_108234Not Available14497Open in IMG/M
3300027361|Ga0209489_108709All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Fabales → Fabaceae → Papilionoideae → 50 kb inversion clade → NPAAA clade → indigoferoid/millettioid clade → Phaseoleae13494Open in IMG/M
3300027361|Ga0209489_109177All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta12575Open in IMG/M
3300027361|Ga0209489_110058All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Fabales → Fabaceae → Papilionoideae → 50 kb inversion clade → NPAAA clade → indigoferoid/millettioid clade → Phaseoleae11053Open in IMG/M
3300027361|Ga0209489_110328All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta10633Open in IMG/M
3300027361|Ga0209489_110465All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta10434Open in IMG/M
3300027361|Ga0209489_110763All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Fabales → Fabaceae → Papilionoideae → 50 kb inversion clade → NPAAA clade → indigoferoid/millettioid clade → Phaseoleae → Phaseolus → Phaseolus vulgaris9976Open in IMG/M
3300027361|Ga0209489_112420Not Available7765Open in IMG/M
3300027361|Ga0209489_113571All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta6452Open in IMG/M
3300027361|Ga0209489_113795All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Fabales → Fabaceae → Papilionoideae → 50 kb inversion clade → NPAAA clade → indigoferoid/millettioid clade → Phaseoleae → Glycine → Glycine subgen. Soja → Glycine max6208Open in IMG/M
3300027361|Ga0209489_114557Not Available5436Open in IMG/M
3300027361|Ga0209489_115238Not Available4844Open in IMG/M
3300027363|Ga0209700_103820All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta28238Open in IMG/M
3300027363|Ga0209700_108350All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Fabales → Fabaceae → Papilionoideae → 50 kb inversion clade → NPAAA clade → indigoferoid/millettioid clade → Phaseoleae → Vigna → Vigna radiata → Vigna radiata var. radiata13365Open in IMG/M



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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
Root NodulesHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Root Nodules89.42%
Root NoduleHost-Associated → Plants → Nodule → Unclassified → Unclassified → Root Nodule10.58%

Visualization
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Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
3300006941Root nodule microbial communities of legume samples collected from California, USA - Siratro red BWHost-AssociatedOpen in IMG/M
3300006942Root nodule microbial communities of legume samples collected from California, USA - Siratro white BWHost-AssociatedOpen in IMG/M
3300009763Root nodule microbial communities of legume samples collected from Mexico - Siratro Mexico nodule mixHost-AssociatedOpen in IMG/M
3300027361Root nodule microbial communities of legume samples collected from California, USA - Siratro white BW (SPAdes)Host-AssociatedOpen in IMG/M
3300027363Root nodule microbial communities of legume samples collected from California, USA - Siratro red BW (SPAdes)Host-AssociatedOpen in IMG/M

Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
Ga0099825_10000721023300006941Root NodulesMEVEHDETLKHRIEEVDETPHDAEAIEMQGMKHVRRLMVK*
Ga0099825_100013473300006941Root NodulesMEVEHDETLKHQIEEVDETPHDLEAMEMQGRKRARRLTVK*
Ga0099825_100128693300006941Root NodulesVQASMEVEYDETLKHRIEEVDETSHDAEAMEMQGRKRARRLMVK*
Ga0099825_100158313300006941Root NodulesMQASMEVEHDGTLKHRIEEVDETAHDAEAMEMQRRKRARRLMVK*
Ga0099825_100176083300006941Root NodulesMKVEHDETLKHRIEEVDETPHDAEAIEMKGRKRERRLMVK*
Ga0099825_100187823300006941Root NodulesVQAEVEHDETLKHRIEEVDETPHDAEAMEMQGRKRARRLMVK*
Ga0099825_1001932383300006941Root NodulesMEVEHDETLKHRIEEVDETPHDAKAMEIQGRKRARRLMVK*
Ga0099825_100222533300006941Root NodulesVPLLLAQASMEVEHDETLKHEIEEVDETPHDAEAMEMQGRKRARRLMVK*
Ga0099825_100239093300006941Root NodulesMEVEHDETLKHRIEEVDETPHDAEAMEIQGRKRARRLMVK*
Ga0099825_1002398233300006941Root NodulesMEVEHDETLKHRIKEVDETPHDAEAMEMQGRKRARRLMVK*
Ga0099825_1002581353300006941Root NodulesMEVEHDETLKHRIEEVDETPYDAEATKMQGRKSARRLMVK*
Ga0099825_1003558483300006941Root NodulesMEFEHDKTLKHRIEEVDETPHDVEAMEMQGRKHARKLMVK*
Ga0099825_1003732223300006941Root NodulesMEVEHDETLKHRIEEVDGTPHDAEAMEMQGRKRARRLMVK*
Ga0099825_1004616293300006941Root NodulesMEVEHDETLKHRIEEVDETPHDAEAMEMKGRKRARRLMVK*
Ga0099825_100506473300006941Root NodulesMKVEHDETLKHRIEEVDETPHDAEAMEMQGRKHARRLMMK*
Ga0099825_1005734223300006941Root NodulesMEVELGETLRHRMEEMDELLHVAEAMEMQGRKHARRLMVK*
Ga0099825_100590943300006941Root NodulesMEVKHDETLKHRIEEVDETPHDVEAMQMQGRKHAKR*
Ga0099825_1006803113300006941Root NodulesMEVEHAETLKHQIEEVDETPHDAEAMKMQGRKRARRLMVK*
Ga0099825_1008523153300006941Root NodulesMEVEHDETLKHRIEEVDETPHYAEAMEIQGRKRARRLMVK*
Ga0099825_1009019143300006941Root NodulesMEVEHDETLKHQIEEVDETPHDAEAMEMQGRKHARRLMVK*
Ga0099825_100901973300006941Root NodulesMEVELGETLRHQMEEMDELLHIVEAMEIQGRNHARRLMVK*
Ga0099825_100921343300006941Root NodulesMEVKHDETLKHRIEEVDETPHDVKAMEMQGRKYARRLMVK*
Ga0099825_1009849113300006941Root NodulesMEIEHDKTLKHRIEEVDETPHDAEAMKMRGRKRARRLMVK*
Ga0099825_101019363300006941Root NodulesMKVGHDETLKHRIEEVDETTHDAEVMEMQGRKRARRLMVK*
Ga0099825_1012162123300006941Root NodulesMEVEHDESLKHRIEEVDETPHDAEAMEMQGRKCSRRLMVK*
Ga0099825_101359723300006941Root NodulesMQASMEVEHDETLKHRIEEVDETPHDAKIMEMQGRKHERRLMVK*
Ga0099825_101586613300006941Root NodulesMEVEHDETLKHLIEEVDETPFDVEDMEMQGRKCARRLMVK*
Ga0099825_101622873300006941Root NodulesMEVEHDETLKHRREEVDGTPHDAEAMEMQGRKRARRLMVK*
Ga0099825_101740243300006941Root NodulesMEVEHDETLKHRIEEVDETPHDAEAMEMQGRKRARRLMLK*
Ga0099825_101786773300006941Root NodulesMEVEHDEALKHQIEEVDETPHDAEAMEMQGRKRARRLMVK*
Ga0099825_101819033300006941Root NodulesVQASMEVEHDEALKHRIEEVDETPHDAEAIEMQERKRARRLMVK*
Ga0099825_101992413300006941Root NodulesMEVEHDETLKHRIEEVDETPHDVEAMEMQGRKRARRLMMK*
Ga0099825_102110523300006941Root NodulesMEVEHDETLKHRIEEVDETPHDAEAMEMQGRKRARRLMVK*
Ga0099825_102330253300006941Root NodulesMEVEHDETLKHRIEEVDETSHDAEAMEMKGRKHAKRLMVK*
Ga0099825_102339843300006941Root NodulesMKVEHDETLKQRIEVDETPHDAEAMEMQGKRGVRRLMVK*
Ga0099825_102392123300006941Root NodulesMEVEHDETLKHQIKEVDETPHDAEAMEIQGRKHARRLMVK*
Ga0099825_102611953300006941Root NodulesMEIEHNETLKHRIEEVDEIPHDAEAMEMQGRKRARRLMVNRW*
Ga0099825_103237113300006941Root NodulesMQASMEVEHDETLKHRIEEVGETPHDAEAMEMQGRKCARRLMVK*
Ga0099825_103453213300006941Root NodulesMEVEHGETLKHRMEEVDETPHHDAEAMEMQGRKRARRLMVK*
Ga0099825_104119723300006941Root NodulesMEVEHDETLKHRIEEVDETPHDAEAIEMQGKKRARRLMVK*
Ga0099825_104981323300006941Root NodulesMKVEHDEALKHQIEKVDETPHDAEAMEMQGRKHARRLMVK*
Ga0099824_1003690133300006942Root NodulesMKVEHDETLKHRIEVDETPHDAEAMEMQGKRGVRRLMVK*
Ga0099824_100535523300006942Root NodulesMEVEHDETLKHRIEEVDETPHDVEAMEIQGRKRARRLMMK*
Ga0099824_101195033300006942Root NodulesMEVEHDETLKHRIEEVDETPPDTEAMEMQGRKRARRLMVK*
Ga0099824_1019486113300006942Root NodulesVQASIEVKHDETLKHRIEEVDETPHDVEAMEMQGRKRAKRLMVK*
Ga0099824_102120943300006942Root NodulesVQASMEVELDETLKHRIEEVDETPHDAEAMEMQGKKHARRLLVK*
Ga0123340_1000247133300009763Root NoduleMEVKHVEALMYKLEEVDETPNDAEAMEVQGRKRARRFMVK*
Ga0123340_100094793300009763Root NoduleVQALMEVEHDETLKHRIEEVDETPHDAEAIEMQGMKHVRRLMVK*
Ga0123340_100682883300009763Root NoduleVQASMEVEHDETLKHQIEEVDETPHDAEAMEMQGRKHARRLMVK*
Ga0123340_101751313300009763Root NoduleMEVEHDKTLKHPIEEVDETPHDAEAMEMQGRKCARRLMVK*
Ga0123340_101793053300009763Root NoduleMEVKHDETLKHRIEEVNETPHDVKAMEMQGRKYARRLMVK*
Ga0123340_102101533300009763Root NoduleMQASMEVELDETLKHRIEEVDETPHDAEAMEMQGKKHARRLLVK*
Ga0123340_102163343300009763Root NoduleVQASMEVEHDETLKHRIEEVDETPHDVEAMEIQGRKRARRLMMK*
Ga0123340_102261723300009763Root NoduleVQASMEVEHDETLKHRIEEVDETPHDAEAIEMQGKKRARRLMVK*
Ga0123340_102582453300009763Root NoduleMEIEHDETLKHRIEEVDEIPHDAEATEMQGRKRARRLMVNRW*
Ga0123340_103288623300009763Root NoduleMEIEHDEILKHQIEEVDETPHDLEAMEMQGRKCARKLMVK*
Ga0123340_103913113300009763Root NoduleMEVEHDETLKHRIEEVDETPYDSEAMEMQGRKRARRLMVR*
Ga0209489_10022373300027361Root NodulesMEVEHDETLKHRIEEVDETPHDAEAIEMQGMKHVRRLMVK
Ga0209489_100293603300027361Root NodulesMEVEHDETLKHRIEEVDETPHDAEAMEMKGRKRARRLMVK
Ga0209489_100356383300027361Root NodulesMKVGHDETLKHRIEEVDETTHDAEVMEMQGRKRARRLMVK
Ga0209489_100441243300027361Root NodulesMEVEHDETLKHRIEEVDETPYDAEATKMQGRKSARRLMVK
Ga0209489_100458353300027361Root NodulesMKVEHDETLKHRIEVDETPHDAEAMEMQGKRGVRRLMVK
Ga0209489_100595633300027361Root NodulesVQAEVEHDETLKHRIEEVDETPHDAEAMEMQGRKRARRLMVK
Ga0209489_100608253300027361Root NodulesMEVEHDETLKHRIEEVDETPHDAEAMEIQGRKRARRLMVK
Ga0209489_100664483300027361Root NodulesMEVEHDESLKHRIEEVDETPHDAEAMEMQGRKCSRRLMVK
Ga0209489_100851383300027361Root NodulesMQASMEVEHDGTLKHRIEEVDETAHDAEAMEMQRRKRARRLMVK
Ga0209489_101244113300027361Root NodulesMEVELGETLRHRMEEMDELLHVAEAMEMQGRKHARRLMVK
Ga0209489_101478313300027361Root NodulesMEVEHAETLKHQIEEVDETPHDAEAMKMQGRKRARRLMVK
Ga0209489_102524283300027361Root NodulesMKVEHDETLKHRIEEVDETPHDAEAIEMKGRKRERRLMVK
Ga0209489_10260613300027361Root NodulesVPLLLAQASMEVEHDETLKHEIEEVDETPHDAEAMEMQGRKRARRLMVK
Ga0209489_103110153300027361Root NodulesMEVEHDKTLKHRIEEVDETPHDAEAMEMQGRKCARRLMVK
Ga0209489_103259143300027361Root NodulesMEVEHDETLKHRIEEVDETPHDVEAMEIQGRKRARRLMMK
Ga0209489_10325993300027361Root NodulesMKVEHDETLKHRIEEVDETPHDAEAMEMQGRKHARRLMMK
Ga0209489_103329133300027361Root NodulesMEVEHDETLKHLIEEVDETPFDVEDMEMQGRKCARRLMVK
Ga0209489_10351773300027361Root NodulesMKVEHDEALKHQIEKVDETPHDAEAMEMQGRKHARRLMVK
Ga0209489_10379773300027361Root NodulesMQASMEVEHDETLKHRIEEVGETPHDAEAMEMQGRKCARRLMVK
Ga0209489_103851193300027361Root NodulesMEVEHDETLKHQIEEVDETPHDLEAMEMQGRKRARRLTVK
Ga0209489_104056253300027361Root NodulesMEVEHDETLKHRIEEVDETPYDSEAMEMQGRKRARRLMVR
Ga0209489_104244123300027361Root NodulesMEVKHDETLKHRIEEVDETPHDVEAMQMQGRKHAKR
Ga0209489_104244173300027361Root NodulesMEVEHDETLKHRIEEVDETSHDAEAMEMKGRKHAKRLMVK
Ga0209489_104382173300027361Root NodulesMEVEHDETLKHRIEEVDETPPDTEAMEMQGRKRARRLMVK
Ga0209489_10445563300027361Root NodulesMEVEHDETLKHQIKEVDETPHDAEAMEIQGRKHARRLMVK
Ga0209489_10556283300027361Root NodulesVQASMEVEYDETLKHRIEEVDETSHDAEAMEMQGRKRARRLMVK
Ga0209489_105585123300027361Root NodulesMQASMEVEHDETLKHRIEEVDETPHDAKIMEMQGRKHERRLMVK
Ga0209489_10598583300027361Root NodulesMEVEHDETLKHRIEEVDGTPHDAEAMEMQGRKRARRLMVK
Ga0209489_10694373300027361Root NodulesMEIEHDKTLKHRIEEVDETPHDAEAMKMRGRKRARRLMVK
Ga0209489_10698653300027361Root NodulesMEVEHDETLKHRIEEVDETPHDAKAMEIQGRKRARRLMVK
Ga0209489_107548103300027361Root NodulesMEVEHDETLKHRIEEVDETPHYAEAMEIQGRKRARRLMVK
Ga0209489_107763123300027361Root NodulesMEVELGETLRHQMEEMDELLHIVEAMEIQGRNHARRLMVK
Ga0209489_10776373300027361Root NodulesMEVEHDETLKHQIEEVDETPHDAEAMEMQGRKHARRLMVK
Ga0209489_108234123300027361Root NodulesMEFEHDKTLKHRIEEVDETPHDVEAMEMQGRKHARKLMVK
Ga0209489_10870953300027361Root NodulesMEVEHDETLKHRIEEVDETPHDAEAMEMQGRKRARRLMVK
Ga0209489_10917773300027361Root NodulesMEVKHDETLKHRIEEVNETPHDVKAMEMQGRKYARRLMVK
Ga0209489_11005833300027361Root NodulesMEVEHDEALKHQIEEVDETPHDAEAMEMQGRKRARRLMVK
Ga0209489_11032833300027361Root NodulesMEVEHGETLKHRMEEVDETPHHDAEAMEMQGRKRARRLMVK
Ga0209489_11046523300027361Root NodulesMEVEHDETLKHRIEEVDETPHDAEAIEMQGKKRARRLMVK
Ga0209489_11076383300027361Root NodulesMEIEHDEILKHQIEEVDETPHDLEAMEMQGRKCARKLMVK
Ga0209489_11242043300027361Root NodulesMQASMEVELDETLKHRIEEVDETPHDAEAMEMQGKKHARRLLVK
Ga0209489_11357173300027361Root NodulesMEVEHDETLKHRREEVDGTPHDAEAMEMQGRKRARRLMVK
Ga0209489_11379513300027361Root NodulesMEIEHDETLKHRIEEVDEIPHDAEATEMQGRKRARRLMVNRW
Ga0209489_11455733300027361Root NodulesMEVEHDEALKHRIEEVDETPHDAEAIEMQERKRARRLMVK
Ga0209489_11523813300027361Root NodulesMEVEHDETLKHRIEEVDETPHDAEAMEMQGRKRARRLMLK
Ga0209700_103820233300027363Root NodulesVQASMEVEHDETLKHRIEEVDETPHDVEAMEIQGRKRARRLMMK
Ga0209700_10835053300027363Root NodulesVQASMEVEHDETLKHRIEEVDETPHDAEAIEMQGKKRARRLMVK


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