Metagenome / Metatranscriptome Family F097990

Basic Information
Family ID	F097990
Family Type	Metagenome / Metatranscriptome
Number of Sequences	104
Average Sequence Length	59 residues
Representative Sequence	IRLPLAEGRTLAMIHALGRVLHSEIDDSHMRLDAEVPASIAKRLRLKEYAVEETFPRSLS
Number of Associated Samples	74
Number of Associated Scaffolds	104

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	0.00 %
% of genes near scaffold ends (potentially truncated)	4.81 %
% of genes from short scaffolds (< 2000 bps)	4.81 %
Associated GOLD sequencing projects	66
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.46

Most Common Taxonomy
Group	Unclassified (95.192 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil (49.038 % of family members)
Environment Ontology (ENVO)	Unclassified (41.346 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (49.038 % of family members)

Full Alignment
Alignment of all the sequences in the family.

Powered by MSAViewer

Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

Powered by MSAViewer

AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

Powered by MSAViewer

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 34.09% β-sheet: 0.00% Coil/Unstructured: 65.91%
Feature Viewer

Powered by Feature Viewer

Pfam ID	Name	% Frequency in 104 Family Scaffolds
PF01066	CDP-OH_P_transf	25.96
PF01871	AMMECR1	5.77
PF16538	FlgT_C	0.96
PF08501	Shikimate_dh_N	0.96
PF05163	DinB	0.96
PF01926	MMR_HSR1	0.96
PF16360	GTP-bdg_M	0.96

COG ID	Name	Functional Category	% Frequency in 104 Family Scaffolds
COG0558	Phosphatidylglycerophosphate synthase	Lipid transport and metabolism [I]	25.96
COG1183	Phosphatidylserine synthase	Lipid transport and metabolism [I]	25.96
COG5050	sn-1,2-diacylglycerol ethanolamine- and cholinephosphotranferases	Lipid transport and metabolism [I]	25.96
COG2078	Predicted RNA modification protein, AMMECR1 domain	General function prediction only [R]	5.77
COG0169	Shikimate 5-dehydrogenase	Amino acid transport and metabolism [E]	0.96
COG2318	Bacillithiol/mycothiol S-transferase BstA/DinB, DinB/YfiT family (unrelated to E. coli DinB)	Secondary metabolites biosynthesis, transport and catabolism [Q]	0.96

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	95.19 %
All Organisms	root	All Organisms	4.81 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	95.19 %
cellular organisms	root	All Organisms → cellular organisms	4.81 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	95.19 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	4.81 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	95.19 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	4.81 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	95.19 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	4.81 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	95.19 %
Acidobacteria bacterium 13_1_40CM_4_58_4	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_1_40CM_4_58_4	4.81 %

Scaffold	Taxonomy	Length	IMG/M Link
3300009137\|Ga0066709_104400571	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_1_40CM_4_58_4	514	Open in IMG/M
3300011271\|Ga0137393_11268179	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_1_40CM_4_58_4	625	Open in IMG/M
3300012205\|Ga0137362_11626427	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_1_40CM_4_58_4	533	Open in IMG/M
3300012363\|Ga0137390_10675955	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_1_40CM_4_58_4	996	Open in IMG/M
3300015264\|Ga0137403_10984966	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_1_40CM_4_58_4	690	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	98.08%
Aquatic	Environmental → Aquatic	1.92%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	98.08%
Freshwater	Environmental → Aquatic → Freshwater	0.96%
Sediment	Environmental → Aquatic → Sediment	0.96%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	92.31%
Loam	Environmental → Terrestrial → Soil → Loam	3.85%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	1.92%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	0.96%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	0.96%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	54.81%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	25.00%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	11.54%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	2.88%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	1.92%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	0.96%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	0.96%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	0.96%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.96%

Habitat	Taxonomy	Distribution
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	49.04%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	15.38%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	9.62%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	7.69%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	4.81%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	3.85%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	1.92%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	1.92%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	0.96%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	0.96%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	0.96%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.96%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.96%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	0.96%

Visualization

Powered by ApexCharts

Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000912	Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA Ref_M3	Environmental	Open in IMG/M
3300002911	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 10_02_2013_2_20cm	Environmental	Open in IMG/M
3300002914	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm	Environmental	Open in IMG/M
3300002916	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 10_02_2013_1_20cm	Environmental	Open in IMG/M
3300002917	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_100cm	Environmental	Open in IMG/M
3300005171	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_126	Environmental	Open in IMG/M
3300005174	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_129	Environmental	Open in IMG/M
3300005176	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_128	Environmental	Open in IMG/M
3300005179	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_133	Environmental	Open in IMG/M
3300005557	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_153	Environmental	Open in IMG/M
3300005568	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_152	Environmental	Open in IMG/M
3300005575	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_151	Environmental	Open in IMG/M
3300005610	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 3	Environmental	Open in IMG/M
3300006032	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_145	Environmental	Open in IMG/M
3300006172	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2014	Environmental	Open in IMG/M
3300006794	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_107	Environmental	Open in IMG/M
3300006804	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS200	Environmental	Open in IMG/M
3300007255	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_1	Environmental	Open in IMG/M
3300007258	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_3	Environmental	Open in IMG/M
3300007265	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1	Environmental	Open in IMG/M
3300009012	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159	Environmental	Open in IMG/M
3300009038	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG	Environmental	Open in IMG/M
3300009088	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG	Environmental	Open in IMG/M
3300009089	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG	Environmental	Open in IMG/M
3300009137	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158	Environmental	Open in IMG/M
3300010303	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_09182015	Environmental	Open in IMG/M
3300010325	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_20cm_2_0_1 metaG	Environmental	Open in IMG/M
3300010337	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_2_09082015	Environmental	Open in IMG/M
3300011269	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4A metaG	Environmental	Open in IMG/M
3300011270	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4B metaG	Environmental	Open in IMG/M
3300011271	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4B metaG	Environmental	Open in IMG/M
3300012096	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4B metaG	Environmental	Open in IMG/M
3300012189	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4A metaG	Environmental	Open in IMG/M
3300012198	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_20_16 metaG	Environmental	Open in IMG/M
3300012199	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_40_16 metaG	Environmental	Open in IMG/M
3300012202	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaG	Environmental	Open in IMG/M
3300012205	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaG	Environmental	Open in IMG/M
3300012206	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_100_16 metaG	Environmental	Open in IMG/M
3300012363	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4A metaG	Environmental	Open in IMG/M
3300012389	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_20cm_5_16_2 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012582	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_20_16 metaG	Environmental	Open in IMG/M
3300012683	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz2.16 metaG	Environmental	Open in IMG/M
3300012929	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300015264	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300017822	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_2	Environmental	Open in IMG/M
3300018058	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP05_20_MG	Environmental	Open in IMG/M
3300019789	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300020199	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300020579	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M	Environmental	Open in IMG/M
3300020580	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-M	Environmental	Open in IMG/M
3300021088	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-M	Environmental	Open in IMG/M
3300021178	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-M	Environmental	Open in IMG/M
3300022531	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-28-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300024330	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300026310	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 10_02_2013_2_20cm (SPAdes)	Environmental	Open in IMG/M
3300026314	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_143 (SPAdes)	Environmental	Open in IMG/M
3300026322	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_136 (SPAdes)	Environmental	Open in IMG/M
3300026324	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_125 (SPAdes)	Environmental	Open in IMG/M
3300026325	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_107 (SPAdes)	Environmental	Open in IMG/M
3300026328	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_129 (SPAdes)	Environmental	Open in IMG/M
3300026529	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_152 (SPAdes)	Environmental	Open in IMG/M
3300026537	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_135 (SPAdes)	Environmental	Open in IMG/M
3300026551	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm (SPAdes)	Environmental	Open in IMG/M
3300027381	Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA Ref_M2 (SPAdes)	Environmental	Open in IMG/M
3300027671	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1 (SPAdes)	Environmental	Open in IMG/M
3300027842	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen04_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300027862	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300027903	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2 (SPAdes)	Environmental	Open in IMG/M
3300031736	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f21	Environmental	Open in IMG/M
3300031777	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f24	Environmental	Open in IMG/M
3300031962	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515	Environmental	Open in IMG/M
3300032174	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_05	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300032205	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05	Environmental	Open in IMG/M

Geographical Distribution

Zoom:	Powered by OpenStreetMap

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI12032J12867_10068403	3300000912	Forest Soil	IRLPLAEGRTLAMIHALGRVLHSEIDDSHMRLDAEVPASIAKRLRLKEYAVEETFPRSLS
JGI25390J43892_100726881	3300002911	Grasslands Soil	GRTLAMIHALGRVLHSEIDDSHMCLDAEVPASVAKRLRLKEYAVEETFPPPLS*
JGI25617J43924_100273631	3300002914	Grasslands Soil	LSIRLPLAEGRTLAMIHALGRVLHSEIDDSHMRLDAEVPASIARRLRLKDFGVEETFPRVLS*
JGI25617J43924_101684032	3300002914	Grasslands Soil	VIRLSIRLPLAEGRTLALIHALGRVLHTEIDDSHMQLDAEVPASIAKRLRLKEYAVEETFPRTLS*
JGI25389J43894_10795902	3300002916	Grasslands Soil	LAEGRTLAMIHALGRVLHSEIDDSHMRLDAEVPASIAKRLRLKEYELEELSHARSRNIE*
JGI25616J43925_103513822	3300002917	Grasslands Soil	AEGRTLAMIHALGRVLHSEIDDSHMRLDAEVPASIVERLRLKAYAVEGTFYRVPS*
Ga0066677_101311503	3300005171	Soil	LSIRLPLAEGRTLAMIHALGRVLHSEIDDSHMRLDAEVPSSVAKRLRLSKYRVDGTFQPSLS*
Ga0066680_101288531	3300005174	Soil	ESLSIRLPLAEGRTLAMIHALGRVLHSEIDDSHMRLDAEVPVSIAKRLRLKAYAVQGTSPRVVS*
Ga0066679_109185142	3300005176	Soil	TLSIRLPLAEGRTLAMIHSLGRVLHSEIDDSHMRLDAEVPASIAKRLRLKEYELEELSRTRSRNIE*
Ga0066684_100726051	3300005179	Soil	RLPLAEGRTLAMIHALGRVLHSEIDDSHMRLDAEIPSSVAKRLRLNEFRVNGTFRASSS*
Ga0066704_101406771	3300005557	Soil	RILALIHALGRVVHSEIDDSHIRLDAEIPSSVAKRLGLREYRVDGTFQPSPS*
Ga0066703_102589591	3300005568	Soil	LSIRLPLAEGRILALIHALGRVVHSEIDDSHIRLDAEIPSSVAKRLGLREYRVDGTFQPSPS*
Ga0066702_105492823	3300005575	Soil	LAMIHALGRVLHSEIDDSHMRLDAEIPASIAKRLRLKEYAVEETFPGSLS*
Ga0070763_104120492	3300005610	Soil	RTLALIHALGRVLHSEVQDSHMLLEAEVPASIAKRLRLNDFAIKETLRHVLS*
Ga0066696_102044381	3300006032	Soil	PLAEGRILALIHALGRVVHSEIDDSHIRLDAEIPSSVAKRLGLREYRVDGTFQPSPS*
Ga0075018_100438484	3300006172	Watersheds	MIHALGRVLHSEIDDSHLRLEAEVPASIAKRLRLKEFAMEEPFRALSRNID*
Ga0066658_100794644	3300006794	Soil	AEGRTLAMIHALGRVLHSEIDDSHMRLDAEVPASIATRLRLKEYAVQETFPRAVS*
Ga0079221_104240273	3300006804	Agricultural Soil	AEGRTLAMIHALGRVLHSEIDDSHMRLDAEVPASIAKRLRLSKYVIEETFRSSTS*
Ga0099791_100027268	3300007255	Vadose Zone Soil	DAVVKISIRLPLAEGRTLAMIHALGRVLHSEIDDSHMRLDAEVPASIAKRLRLKEFAVEETFSRTLS*
Ga0099791_101306041	3300007255	Vadose Zone Soil	DAVVKISIRLPLAEGRTLAMIHALGRVLHSEIDDSHMRLDAEVPASIAKRLRLKDFAVEETFSRTLS*
Ga0099791_102046451	3300007255	Vadose Zone Soil	EGRILAMIHALGRVLQSEIDDSHMRLAVEVPASVAKRLKLKEYAVEETFPRALSYD*
Ga0099793_101737002	3300007258	Vadose Zone Soil	LPLAEGRTLALIHALGRVLHSELDDSHMRLDAEVPASIAKRLRLKEYAVEEPFRALSRNIE*
Ga0099794_100548734	3300007265	Vadose Zone Soil	AVVKISIRLPLAEGRTLAMIHALGRVLHSEIDDSHMRLDAEVPASIAKRLRLKEFAVEETFSRTLS*
Ga0099794_103349242	3300007265	Vadose Zone Soil	SIRLPLAEGRTLAMIHALGRVLHSEIDDSHMRLDAEVPASIAKRLRLKDFAVEETFSRTLS*
Ga0099794_105523851	3300007265	Vadose Zone Soil	IRLPLAEGRTLAMIHALGRVLHSEIDDSHMRLDAEVPASIAKRLRLKEYAVEETFPRAIS
Ga0066710_1004551734	3300009012	Grasslands Soil	VTLSIRLPLAEGRTLAMIHALGRVLHSEIDDSHMRLDAEVPASIATRLRLKEYAVEGTFPRVLS
Ga0066710_1007176373	3300009012	Grasslands Soil	VTLSIRLPLAEGRTLAMIHALGRVLHSEIDDSHMRLDAEVPASIATRLRLKEYAVEETFPRVLS
Ga0099829_110622712	3300009038	Vadose Zone Soil	LPMAEGRTLALIHALGRVLHSEVDDAHMRLDAEVPASIARRLRLTDYAVEETSRRSLS*
Ga0099830_118306661	3300009088	Vadose Zone Soil	RTLAMIHALGRVLHSEIDDSHMRLDAEVPASIAKRLRLKEFAVEETFSRSVS*
Ga0099828_102436643	3300009089	Vadose Zone Soil	LAMIHALGRVLHSEIDDSHMRLDAEVPASIAKRLRLKEYAVEETFPRVLS*
Ga0099828_105217651	3300009089	Vadose Zone Soil	TLSIRLPLAEGRTLAMIHALGRVLHTEIDDSHMRLHAEIPASIAARLRLNNYVLKETFPRSLS*
Ga0066709_1044005711	3300009137	Grasslands Soil	TDPVVTISIRLPLAEGRTLAMIHALGRVLHSEIDDSHMRLDAEVPASIATRLRLKEYAVQETFPRVLS*
Ga0134082_101826312	3300010303	Grasslands Soil	TLSIRLPLAEGRTLALIHALGRVLHTEIDDSHMQLDAEVPASIAKRLRLKEYAVEEPFRALSRNIE*
Ga0134082_102898091	3300010303	Grasslands Soil	IRLPLAEGRALAMIHALGRVLHSEIDDSHMRLDAEIPSSVAKRLRLNEFRVNGTFRASSS
Ga0134064_101666961	3300010325	Grasslands Soil	LAEGRTLAMIHALGRVLHSEIDDSHMRLDAEIPSSVAKRLRLNEFRVNGTFRASSS*
Ga0134062_100117181	3300010337	Grasslands Soil	IRLPLAEGRTLAMIHALGRVLHSEIDDSLMRLDAEVPASIATRLRLKEYAVKETFPRVLS
Ga0137392_104799891	3300011269	Vadose Zone Soil	LAMIHALGRVLHSEIDDSHMRLDAEVPASIAKRLRLKEFAVEETFSRTLS*
Ga0137392_114345572	3300011269	Vadose Zone Soil	PVVTLSIRLPLAEGRTLAMIHALGRVLHSEIDDSYMRLDAEVPASIAKRLRLKEYAVEGTFPRSGS*
Ga0137391_113336341	3300011270	Vadose Zone Soil	PLAEGRTLAMIHALGRVLHSEIDDSHMRLDAEVPASIAKRLRLKEFAVEETFSRTLS*
Ga0137393_100535505	3300011271	Vadose Zone Soil	LPLAEGRTLAMIHALGRVLHSEIDDSHMRLDAEVPASIAKRLRLKEYAVEGTFPRSVS*
Ga0137393_103715891	3300011271	Vadose Zone Soil	AEGRTLAMIHALGRVLHSEIDDSHMRLDAEVPASIAKRLRLKEYAVEGTFPRVLS*
Ga0137393_111139192	3300011271	Vadose Zone Soil	LTLSIRLPLAEGRTLAMIHALGRVLHTEIDDSHMRLHAEIPASIAARLHLNKYVLKETFPRSLS*
Ga0137393_111313222	3300011271	Vadose Zone Soil	SIRLPMAEGRTLALIHALGRVLHSEVDDAHMRLDAEVPASIAKRLRLTDYAVKETSRRSLS*
Ga0137393_112681792	3300011271	Vadose Zone Soil	TDAVVKISIRLPLAEGRTLAMIHALGRVLRSEIDDSHMRLDAEVPASIAKRLRLKEFAVEETFSRTLS*
Ga0137389_100140707	3300012096	Vadose Zone Soil	TLSIRLPLAEGRTLALIHALGRVLHSELDDSHMRLDAEVPASIAKRLRLKEYAVEEPFRALSRNIE*
Ga0137389_107165381	3300012096	Vadose Zone Soil	LAMIHALGRVLHSEIDDSHMLLDAEVPASIAKRLRLKEYAVEGTFPRARS*
Ga0137388_100886575	3300012189	Vadose Zone Soil	SMRLPLAEGRTLAMIHALGRVLHSEIDDSHMRLDAEVPASIAKRLRLKEYAVEETFPRVLS*
Ga0137388_103419801	3300012189	Vadose Zone Soil	TDAVVKISIRLPLAEGRTLAMIHALGRVLHSEIDDSHMRLDAEVPASIAKRLRLKKFAVEETFSRSTS*
Ga0137388_105568953	3300012189	Vadose Zone Soil	LPLAEGRTLAMIHALGRVLHSEIDDSHMRLDAEVPASIAKRLRLKEYAVEETFPRALS*
Ga0137388_106054792	3300012189	Vadose Zone Soil	SIRLPLAEGRTLAMIHALGRVLHSEIDDSHMRLDAEIPSSVVKRLRLNEYRVDGTFQISLS*
Ga0137388_107748922	3300012189	Vadose Zone Soil	SIRLPLGEGRTLAMIHALGRVLHSEIDDSHMRLDAEVPTSVAKRLRLKEFAMEETFSR*
Ga0137364_102849213	3300012198	Vadose Zone Soil	PVVTLRVRLPLAEGRTLAMIHALGRVLHSEIDDSHMCLDAEVPASVAKRLRLKEYAVEETFPRSLS*
Ga0137383_107717301	3300012199	Vadose Zone Soil	MPTDAVVKISIRLPLAEGRTLAMIHALGRVLHSEIDDSHMRLDAEVPASIAKRLRLKEFA
Ga0137363_101563171	3300012202	Vadose Zone Soil	LAEGRTLAMIHALGRVLHSEIDDSHVRLDAEVPASIAKRLRLKEYAVEEPFRAPSRNIE*
Ga0137363_108024971	3300012202	Vadose Zone Soil	IRLPLAEGRTLAMIHALGRVLHSEIDDSHMRLDAEVPASIAKRLRLKDFAVEETFSRTLS
Ga0137363_109910802	3300012202	Vadose Zone Soil	RLPLADGRTLALIHALGRVLHSEIDDSHMRLDAEVPASIAKRLRLKEYAVEEPFRTLSRNME*
Ga0137362_102035451	3300012205	Vadose Zone Soil	KISIRLPLAEGRTLAMIHALGRVLHSEIDDSHMRLDAEVPASIAKRLRLKDFAVEETFSRTLS*
Ga0137362_104511423	3300012205	Vadose Zone Soil	PVVTLSIRLPLAEGRTLAMIHALGRVLHSEIDDSHMRLDAEVPASIARRLRLKDFGVEETFPRVLS*
Ga0137362_116264271	3300012205	Vadose Zone Soil	RTLALIHALGRVLHSEVDDAHMRLDAEVPASIAKRLRLTDYAVEETSRRPLS*
Ga0137380_100396706	3300012206	Vadose Zone Soil	AEGRTLAMIHALGRVLHAEIDDSHMRLRAEIPASIATRLRLNNYVLEETFPRSLS*
Ga0137390_106759551	3300012363	Vadose Zone Soil	MPTDPVVKISIRLPLAEGRTLAMIHALGRVLRSEIDDSHMRLDAEVPASIAKRLRLKEFAVEETFSRTLS*
Ga0137390_115497062	3300012363	Vadose Zone Soil	RLPLAEGRTLAMIHALGRVLHSEIDDSHMRLDAEVPASIAKRLRLKEYAVEGTIPRARA*
Ga0137390_117226511	3300012363	Vadose Zone Soil	IRLPLAEGRTLAMIHALGRVLHSEIDDSYMRLDAEVPASIAKRLRLKEYAVEGTFPRSGS
Ga0134040_12616612	3300012389	Grasslands Soil	LTLSIRLPLAEGRTLAMIHALGRVLHSEIDDSHMRLDAEIPSSVAKRLRLDDYKVEGTFQPSLS*
Ga0137358_109140262	3300012582	Vadose Zone Soil	VKISIRLPLAEGRTLAMIHALGRVLHSEIDDSHMRLDAEVPASIAKRLRLKEFAVEETFSRSVS*
Ga0137398_105750701	3300012683	Vadose Zone Soil	AEGRTLAMIHALGRVLQSEIDDSHMRLDVEVPASIAKRLKLKEYVVEETFPRALSYD*
Ga0137404_108612062	3300012929	Vadose Zone Soil	GGRTLAMIHALGRVLHSEIDDSHMRLDAEVPASIAKRLRLKDFAVEETFSRTLS*
Ga0137404_109446681	3300012929	Vadose Zone Soil	SVRLPLAEGRTLAMIHALGRVLQSEIDDSHMRLAVEVPASVAKRLKLKEYAVEETFPRALSYD*
Ga0137403_102778931	3300015264	Vadose Zone Soil	ISIRLPLAEGRTLAMIHALGRVLQSEIDDSHMRLAVEVPASVAKRLKLKEYAAEETFPRALSYD*
Ga0137403_109849662	3300015264	Vadose Zone Soil	TDAVVKISIRLPLAEGRTLAMIHALGRVLHSEIDDSHMRLDAEVPASIAKRLRLKDFAVEETFSRTLS*
Ga0187802_100410251	3300017822	Freshwater Sediment	LAEGRTLALIHALGRVLHSEVDDSHMRLHAEVPVSVAKRLKLNGFSVKETSELPIS
Ga0187766_107423902	3300018058	Tropical Peatland	IRLPLVEGRTLAMIHALGRVLHTELDDSHMRLQAEIPASIAKRLRLKEFTVEETFRPVAS
Ga0187766_113589101	3300018058	Tropical Peatland	LAMIYALGRVLHTELDDSHMRLHAEIPASVAKLLRLQNFTVEETFRNSLS
Ga0137408_10804592	3300019789	Vadose Zone Soil	EGRTLAMIHALGRVLHSEIDDSHMRLDAEVPASIARRLRLKEFAVEETFPRVLS
Ga0179592_101417661	3300020199	Vadose Zone Soil	VALSIRLPLSEGRTLAMIHALGRVLHSEIDDSHMRLDAEVPASIAKRLRLNEYAVEEAFPRLLS
Ga0179592_102370352	3300020199	Vadose Zone Soil	LPLAEGRTLAMIHALGRVLHSEIDDSHMRLDAEVPASIAKRLRLKEYAVEETFPRSLS
Ga0210407_111190291	3300020579	Soil	PLAEGRTLAMIHALGRVLHSEIDDSHMRLDAEVPASIATRLRLKKYAVEETFPRVVS
Ga0210403_101068254	3300020580	Soil	RTLALIHALGRVLHSEIDDSHMRLDAEVPASIAKRLRLKEYAVEEPFRALSRNIE
Ga0210403_115365521	3300020580	Soil	EGRTLAMIYALGRVLHTELDDSHMRLQAEIPASIAKLLRLQNYAVEGTFRRSVS
Ga0210404_105198361	3300021088	Soil	LTLALVHALGRVLHSEVEDSHMRLDAEVPASIAKRLRLNDFAVKGTFRQSVS
Ga0210408_100950895	3300021178	Soil	SLSIRLPLAEGRTLAMIHALGRVIHSEIEDSHMRLDAEVPASIAKRLRLNEYAMEETFPRVVS
Ga0242660_11802232	3300022531	Soil	VVSLSIRLPLAEGRTLAMVHALGRVLHSEIDDSHMRLDAEVPASIAKRLRLNEYAVEETFPRLLS
Ga0137417_11024763	3300024330	Vadose Zone Soil	RTLAMIHALGRVLHSEIDDSHMRLDAEVPASIAKRLRLKEYAVEETFPRSLS
Ga0209239_11953192	3300026310	Grasslands Soil	GRTLAMIHALGRVLHSEIDDSHMRLDAEVPASIAKRLRLKEYELEELSHARSRNIE
Ga0209268_11588882	3300026314	Soil	PLAEGRTLAMIHALGRVLHSEIDDSHMRLDAEVPSSVAKRLRLNDYRVKGTFQPSLS
Ga0209687_12581502	3300026322	Soil	RTLAMIHALGRVLHSEIEDSHMRLDAEIPSSVAKRLRLNDYRVEGTFPSSLS
Ga0209470_10266931	3300026324	Soil	RILALIHALGRVVHSEIDDSHIRLDAEIPSSVAKRLGLREYRVDGTFQPSPS
Ga0209152_100679561	3300026325	Soil	MPLAEGRTLAMIHALGRVLHSEIDDSHMRLDAEVPASIAKRLRLKDYSVEETFPRAVS
Ga0209802_10482234	3300026328	Soil	RTLAMIHALGRVLHSEIDDSHMRIDAEVPASIAKRLRLREFAVGETFSRSVS
Ga0209802_10936261	3300026328	Soil	MPTDAVVKISIRLPLAEGRTLAMIHALGRVLHSEIDDSHMRIDAEVPASIAERLRLREFAVEETFSR
Ga0209806_11218241	3300026529	Soil	LSIRLPLAEGRILALIHALGRVVHSEIDDSHIRLDAEIPSSVAKRLGLREYRVDGTFQPSPS
Ga0209157_10240987	3300026537	Soil	AEGRILALIHALGRVVHSEIDDSHIRLDAEIPSSVAKRLGLREYRVDGTFQPSPS
Ga0209648_105957632	3300026551	Grasslands Soil	LSIRLPLAEGRTLAMIHALGRVLHSEIDDSHMRLDAEVPTSIATRLRLKEYAVEETFPRVLS
Ga0208983_10010001	3300027381	Forest Soil	LPLAEGRTLAMIHALGRVLHSEIDDSHMRLDAEVPASIAKRLRLKEYAVETFPRALS
Ga0209588_10392751	3300027671	Vadose Zone Soil	AVVKISIRLPLAEGRTLAMIHALGRVLHSEIDDSHMRLDAEVPASIAKRLRLKEFAVEETFSRTLS
Ga0209580_100243285	3300027842	Surface Soil	RLPLAEGRTLAMIHALGRVLHSEIDDSHMRLDAEIPSSVVKSLRLDDYRVGGTFQPTLS
Ga0209701_106386001	3300027862	Vadose Zone Soil	RLPLAEGRTLAMIHALGRVLHSEIDDSHMRLDAEVPASIAKRLRLKEFAVEETFSRSTS
Ga0209488_109091361	3300027903	Vadose Zone Soil	PLAEGRTLAMIHALGRVLHSEIDDSHMRLEAEVPESIARRLKLREYLVQETFPRQLS
Ga0318501_103289422	3300031736	Soil	LAEGRTLALIHALGRVLHSEIDDSHMRLDAEIPSSVAKRLGLSEYRVDGTFQPSPS
Ga0318543_104933341	3300031777	Soil	SIRLPLAEGRTLAMIHALGRVLHSEIDDSHMRLDAEIPSSVAKRLRLNEYRVDGTFPPSP
Ga0307479_111969332	3300031962	Hardwood Forest Soil	IRLPLAEGRTLAMIHALGRVLHSEIDDSHMRLDAEVPASVAQRLRLKEFAVEETFPRVLS
Ga0307470_119037901	3300032174	Hardwood Forest Soil	VSLSIRLPLAEGRTLAMIHALGRVIHSEIEDSHMRLDAEVPASIAKRLRLNEYAVEETFPRVVS
Ga0307471_1009407971	3300032180	Hardwood Forest Soil	TLAMVHALGRVLHSEIDDSHMRLDAEVPASIARRLRLKEFAVKETFPRVLS
Ga0307472_1027169442	3300032205	Hardwood Forest Soil	EGRTLALIHALGRVLHSEIDDSHMRLDAEVPASIAKRLRLKEYAVEEPFRALSRNIE

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.46
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.46
Powered by PDBe Molstar

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F097990

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences

Hidden Markov Model


Click on a Sequence Logo column to get its information.
Powered by Skylign