Sample 3300000912

3300000912: Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA Ref_M3

Overview

Basic Information
IMG/M Taxon OID	3300000912 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0071004 \| Gp0054792 \| Ga0002413
Sample Name	Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA Ref_M3
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	45132697
Sequencing Scaffolds	64
Novel Protein Genes	68
Associated Families	68

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Acidiferrobacterales → Acidiferrobacteraceae → Acidiferrobacter → Acidiferrobacter thiooxydans	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	4
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_2_20CM_57_17	1
All Organisms → cellular organisms → Bacteria	9
All Organisms → cellular organisms → Bacteria → Proteobacteria	2
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	6
All Organisms → cellular organisms → Bacteria → Acidobacteria	9
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Solibacter → Candidatus Solibacter usitatus	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	6
Not Available	13
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Devosiaceae → Devosia → Devosia psychrophila	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium japonicum	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	4
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Microvirga → Microvirga lotononidis	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_2_20CM_57_7	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfuromonadales → Geobacteraceae → Geobacter → Geobacter sulfurreducens	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Forest Soil Microbial Communities From Multiple Locations In Canada And Usa
Type	Environmental
Taxonomy	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	forest biome → solid layer → forest soil
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline)

Location Information
Location	El Dorado National Forest, Georgetown, California, USA
Coordinates	Lat. (^o)	38.88	Long. (^o)	-120.64	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F001278	Metagenome / Metatranscriptome	733	Y
F001555	Metagenome / Metatranscriptome	672	Y
F001983	Metagenome / Metatranscriptome	608	Y
F002091	Metagenome / Metatranscriptome	595	Y
F002729	Metagenome / Metatranscriptome	534	Y
F003776	Metagenome / Metatranscriptome	469	Y
F003829	Metagenome / Metatranscriptome	466	Y
F003846	Metagenome / Metatranscriptome	465	Y
F003881	Metagenome / Metatranscriptome	464	Y
F003934	Metagenome / Metatranscriptome	461	Y
F005852	Metagenome / Metatranscriptome	388	Y
F006897	Metagenome / Metatranscriptome	362	Y
F006933	Metagenome / Metatranscriptome	361	Y
F008328	Metagenome / Metatranscriptome	335	Y
F008956	Metagenome / Metatranscriptome	325	Y
F009027	Metagenome / Metatranscriptome	324	N
F009566	Metagenome / Metatranscriptome	316	Y
F009895	Metagenome / Metatranscriptome	311	Y
F010490	Metagenome / Metatranscriptome	303	N
F011895	Metagenome / Metatranscriptome	286	Y
F013794	Metagenome / Metatranscriptome	268	Y
F014319	Metagenome / Metatranscriptome	264	Y
F014460	Metagenome / Metatranscriptome	263	Y
F015925	Metagenome / Metatranscriptome	251	Y
F018572	Metagenome / Metatranscriptome	234	Y
F019015	Metagenome / Metatranscriptome	232	Y
F022515	Metagenome / Metatranscriptome	214	Y
F022770	Metagenome / Metatranscriptome	213	Y
F023008	Metagenome	212	Y
F023907	Metagenome / Metatranscriptome	208	Y
F025585	Metagenome / Metatranscriptome	201	N
F032469	Metagenome / Metatranscriptome	180	Y
F034378	Metagenome / Metatranscriptome	175	Y
F035400	Metagenome / Metatranscriptome	172	Y
F035791	Metagenome / Metatranscriptome	171	Y
F037348	Metagenome / Metatranscriptome	168	Y
F040312	Metagenome / Metatranscriptome	162	Y
F043693	Metagenome / Metatranscriptome	156	N
F044126	Metagenome / Metatranscriptome	155	Y
F048591	Metagenome / Metatranscriptome	148	Y
F049913	Metagenome / Metatranscriptome	146	Y
F054445	Metagenome / Metatranscriptome	140	Y
F054602	Metagenome / Metatranscriptome	139	N
F055538	Metagenome	138	Y
F056104	Metagenome / Metatranscriptome	138	N
F056441	Metagenome / Metatranscriptome	137	Y
F057650	Metagenome / Metatranscriptome	136	Y
F059558	Metagenome / Metatranscriptome	133	Y
F062947	Metagenome / Metatranscriptome	130	N
F070529	Metagenome / Metatranscriptome	123	N
F072651	Metagenome / Metatranscriptome	121	N
F073332	Metagenome	120	N
F073982	Metagenome / Metatranscriptome	120	N
F074951	Metagenome / Metatranscriptome	119	N
F077735	Metagenome / Metatranscriptome	117	Y
F079172	Metagenome / Metatranscriptome	116	Y
F081571	Metagenome / Metatranscriptome	114	Y
F086005	Metagenome / Metatranscriptome	111	Y
F087447	Metagenome / Metatranscriptome	110	Y
F092648	Metagenome / Metatranscriptome	107	Y
F094505	Metagenome / Metatranscriptome	106	Y
F095963	Metagenome	105	N
F097990	Metagenome / Metatranscriptome	104	Y
F098148	Metagenome / Metatranscriptome	104	N
F098996	Metagenome / Metatranscriptome	103	Y
F101541	Metagenome	102	Y
F104848	Metagenome / Metatranscriptome	100	Y
F105676	Metagenome / Metatranscriptome	100	Y

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
JGI12032J12867_1000737	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Acidiferrobacterales → Acidiferrobacteraceae → Acidiferrobacter → Acidiferrobacter thiooxydans	1560	Open in IMG/M
JGI12032J12867_1000952	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1452	Open in IMG/M
JGI12032J12867_1001001	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_2_20CM_57_17	1426	Open in IMG/M
JGI12032J12867_1001153	All Organisms → cellular organisms → Bacteria	1366	Open in IMG/M
JGI12032J12867_1001220	All Organisms → cellular organisms → Bacteria → Proteobacteria	1339	Open in IMG/M
JGI12032J12867_1001373	All Organisms → cellular organisms → Bacteria	1285	Open in IMG/M
JGI12032J12867_1001917	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1138	Open in IMG/M
JGI12032J12867_1002204	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1076	Open in IMG/M
JGI12032J12867_1002694	All Organisms → cellular organisms → Bacteria → Acidobacteria	996	Open in IMG/M
JGI12032J12867_1002695	All Organisms → cellular organisms → Bacteria	996	Open in IMG/M
JGI12032J12867_1002782	All Organisms → cellular organisms → Bacteria → Acidobacteria	983	Open in IMG/M
JGI12032J12867_1003149	All Organisms → cellular organisms → Bacteria	928	Open in IMG/M
JGI12032J12867_1003352	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Solibacter → Candidatus Solibacter usitatus	905	Open in IMG/M
JGI12032J12867_1003425	All Organisms → cellular organisms → Bacteria	896	Open in IMG/M
JGI12032J12867_1003435	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	895	Open in IMG/M
JGI12032J12867_1003528	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	886	Open in IMG/M
JGI12032J12867_1003888	Not Available	854	Open in IMG/M
JGI12032J12867_1004095	Not Available	837	Open in IMG/M
JGI12032J12867_1004171	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	831	Open in IMG/M
JGI12032J12867_1005600	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	734	Open in IMG/M
JGI12032J12867_1005712	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Devosiaceae → Devosia → Devosia psychrophila	727	Open in IMG/M
JGI12032J12867_1005774	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	724	Open in IMG/M
JGI12032J12867_1005857	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium japonicum	720	Open in IMG/M
JGI12032J12867_1005940	Not Available	716	Open in IMG/M
JGI12032J12867_1006000	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	713	Open in IMG/M
JGI12032J12867_1006104	All Organisms → cellular organisms → Bacteria	709	Open in IMG/M
JGI12032J12867_1006291	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Microvirga → Microvirga lotononidis	699	Open in IMG/M
JGI12032J12867_1006294	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	699	Open in IMG/M
JGI12032J12867_1006428	All Organisms → cellular organisms → Bacteria → Acidobacteria	695	Open in IMG/M
JGI12032J12867_1006584	All Organisms → cellular organisms → Bacteria → Acidobacteria	688	Open in IMG/M
JGI12032J12867_1006625	Not Available	686	Open in IMG/M
JGI12032J12867_1006652	Not Available	685	Open in IMG/M
JGI12032J12867_1007012	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	671	Open in IMG/M
JGI12032J12867_1007072	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	667	Open in IMG/M
JGI12032J12867_1007260	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	661	Open in IMG/M
JGI12032J12867_1007666	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	647	Open in IMG/M
JGI12032J12867_1007845	All Organisms → cellular organisms → Bacteria	640	Open in IMG/M
JGI12032J12867_1008190	All Organisms → cellular organisms → Bacteria → Acidobacteria	631	Open in IMG/M
JGI12032J12867_1008851	All Organisms → cellular organisms → Bacteria	612	Open in IMG/M
JGI12032J12867_1008891	Not Available	611	Open in IMG/M
JGI12032J12867_1009089	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	605	Open in IMG/M
JGI12032J12867_1009258	All Organisms → cellular organisms → Bacteria → Acidobacteria	601	Open in IMG/M
JGI12032J12867_1009659	All Organisms → cellular organisms → Bacteria → Acidobacteria	592	Open in IMG/M
JGI12032J12867_1009803	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	589	Open in IMG/M
JGI12032J12867_1010026	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	584	Open in IMG/M
JGI12032J12867_1010060	Not Available	583	Open in IMG/M
JGI12032J12867_1010078	Not Available	583	Open in IMG/M
JGI12032J12867_1010282	All Organisms → cellular organisms → Bacteria → Acidobacteria	579	Open in IMG/M
JGI12032J12867_1010413	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	576	Open in IMG/M
JGI12032J12867_1011263	Not Available	560	Open in IMG/M
JGI12032J12867_1011951	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	547	Open in IMG/M
JGI12032J12867_1012168	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	544	Open in IMG/M
JGI12032J12867_1012241	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	543	Open in IMG/M
JGI12032J12867_1012268	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_2_20CM_57_7	542	Open in IMG/M
JGI12032J12867_1013098	All Organisms → cellular organisms → Bacteria → Acidobacteria	529	Open in IMG/M
JGI12032J12867_1013248	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfuromonadales → Geobacteraceae → Geobacter → Geobacter sulfurreducens	527	Open in IMG/M
JGI12032J12867_1013434	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	524	Open in IMG/M
JGI12032J12867_1013608	All Organisms → cellular organisms → Bacteria → Proteobacteria	521	Open in IMG/M
JGI12032J12867_1014141	Not Available	513	Open in IMG/M
JGI12032J12867_1014650	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	506	Open in IMG/M
JGI12032J12867_1014867	All Organisms → cellular organisms → Bacteria	504	Open in IMG/M
JGI12032J12867_1014926	Not Available	503	Open in IMG/M
JGI12032J12867_1014983	Not Available	502	Open in IMG/M
JGI12032J12867_1015098	Not Available	501	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
JGI12032J12867_1000737	JGI12032J12867_10007371	F081571	WVFVESSGRLWGLMLEKAVHCLGILHYGWAWNLASKMDGTSSEAKPTALGYVFVPWFSTGTNSARDFR*
JGI12032J12867_1000952	JGI12032J12867_10009523	F054602	MGDFLHGSEMKSQTIAAVLATVIGLAVAVYAFAYVFVGDTYKSDRRVERIEVPKAPVVQAMPIVKGPVVRDLPLPEK*
JGI12032J12867_1001001	JGI12032J12867_10010011	F073332	FESKLSSMQRSFTIVLVSCCLALLWNPLGSGNEGAQPILSLDLRTFGYLRPIAARDFRAYDFLQDSVAFLDDGTLAVSFYCKNDHPGLSRRGGTPGSEVVFHSVLLDTTTGSVRGQRTWGNAGNWNALLPLENGSFLIQDNEWVKIYSVKLKEIASKQLEVPGDLWPRFSASPSGHSLYEFQDRYDTHRGWLTRIDVLDPATLLTKQSKLTPGHQHETVSDNQVVYSPTVSKDSRIRPDALHLFVFRTDDSGPVKRPELFDQSSSTAKLLAKSGCESATFISNAVLVISGDCPSLMLIRSGEDVAEINSSEYRIGGQIRPSSDGERFAFSRTRLKERPSRITYLELCVYDLAARRIIFTTTVIPLPQHKFAFAISPNGSLLALQIDGLLRVWRLA*
JGI12032J12867_1001153	JGI12032J12867_10011531	F009027	CSXRRTRRDATIAERLLPRIRVIDAVHPLFGQPLEVSPSGLIRRIGWIRVVLPDGRHRWVPQKATDLNVSACEARPNRDLPLVSVRTLIPLAEYVRARLSALGERFDETSGHTADPAVRAGIAGSTADLGAEIVADDDADNTTTAGEAGGTAPPVNAGRSRRRRFDRGASR*
JGI12032J12867_1001220	JGI12032J12867_10012202	F032469	MRAFDRDLIRGGHYGQRPCEPHLKAEHMAAPTNAA
JGI12032J12867_1001373	JGI12032J12867_10013732	F003829	MSLMTHTRERNVESKTWSGSPLKVPEGARFLIVCDDNSDTDRLKVILREAGFVSEWAKSITEGCEAAKSGRFQVVVSSPRMRDGSWRRLTDIANHYDLGFEVVLWARSFDLLEWTEALKDGAFDVLDAMCEQPKAVESTKRALWAAYLKGAGPDPRAANPQRAA*
JGI12032J12867_1001917	JGI12032J12867_10019174	F092648	MRCTPTIHDLIVLTLPPRHRCPLDRMPASRLLLPRSGLERSDFV
JGI12032J12867_1002204	JGI12032J12867_10022041	F098996	MHEFHYAKEHVIARTFHKTFRLIANYLLFGLMAAIALKAQQ
JGI12032J12867_1002694	JGI12032J12867_10026941	F059558	RLISSIKVEVKKKHPSHGRTFSCFAAHLIEQDLF*
JGI12032J12867_1002695	JGI12032J12867_10026952	F098148	RFGVGLANLQSRLKQLYGDESSLELTGGNGRGCEAIITIPLRSSHEDTSPHRR*
JGI12032J12867_1002782	JGI12032J12867_10027822	F037348	MGHESQIELWSPNLTTFCFVGFGTDRLRREPAMKTADRENPIHGATWARNRAHGAAGQNRTRSIEWAEKQEKFRPKEMCFFLTSPFIELIS*
JGI12032J12867_1003149	JGI12032J12867_10031491	F019015	RLPRLDQFVLDHLAATPIASAVAAVDRETRRQIGTSVMEKLRRYADGDGVTYPEETHVLTAQVR*
JGI12032J12867_1003352	JGI12032J12867_10033522	F094505	QEAEKRGFVQVLFDSFMQPLLAGVRSGGVGTRQMLYRADPYQIDVQIEAKPGGNGLMVTGQLLDVSSPGVVGRDVEITLSDHRGNFIHTMTNQYGEFRGEIESTGDLELSFPGKSEKSIVISLRNALGHLPGSKS*
JGI12032J12867_1003425	JGI12032J12867_10034251	F077735	LEHVLRAIMDISAHAISLAEGLNGAIRVTSVRMRREDRSSIIVHPLADSGG*
JGI12032J12867_1003435	JGI12032J12867_10034351	F055538	MDRANQVRQILSTRGLTLYRVCQQSAGIFGRSSRFYVPHNLYYDVGNPSLIPTIHQMLALSHITNYRLYDWLAVFGFDLGQISRLQLLIPRQRTTLLDSSVYDLYAWIPWFAERLKGGQIPPIAPLGQFLGPAEPRRARELLTLNQRRFLYAKVGEEDVQALPHLAPDSIVRVDERRSKELLSDGKNNAEGRIFLVEYGFGFTCSRLMVLEKDRIMLHSPQRHCAQLELRLGREARILGV
JGI12032J12867_1003528	JGI12032J12867_10035282	F062947	MPAMAELLLKRATAASGEVYDVLSGSRIVGRILLSDASPASQWVWTVSYGYHEGRTPTHGYAESREAAMQAFAKGWHRE*
JGI12032J12867_1003846	JGI12032J12867_10038462	F073982	VAFDQSGPRWLGISDLIAEPEGPTFISYKVARSRLDRLRFVTQDP*
JGI12032J12867_1003888	JGI12032J12867_10038881	F010490	MPDEVTPDYVRARWAYSELLSWGHGHLYQGPGVQDLKEKLALGVPFDELGKAEHYLLIDQFDRVRGNHFNRYIIGIPNFKPVLWSRDELAAVHVIPYFVRDVSSLEHLKVTFKQWIEADPVRPLHQDHARYAAYGTAPSTQDDPMTVGHYSGLPVLLDGYHRAVRFWRTSVPAATLAVYVPV*
JGI12032J12867_1004095	JGI12032J12867_10040951	F003934	MIRKLIITVFVFLGAVPTFPHTTQLPTGQTHPALHLMNDSEFAIFLKRLDTDVLRSQAQLKKMDVKSLSLDLQEGEELERSYNRCLQTLDNAREEIQKLSQKQTLRLDLYLLIDLNELARNLDSLDQGLMNPAVGGSSGTQKSLSYAREVLGIDVALATDISTFQHHFLAFTGVIDATLDQAESDASQPQTQK*
JGI12032J12867_1004171	JGI12032J12867_10041711	F105676	RLYVDDAHWQETATMLARDADRIVLCVDASDGVRWEIAHVLQSGHAGKTLFFLNPSLDVQTRTRLLMEDFGVSASDLASVNIDRILALRATSPEQAILMFSAKPERDAYLVAARLAFEDTVAHATTP*
JGI12032J12867_1005600	JGI12032J12867_10056002	F013794	MDAWYKGVMVGGGLNGAIGFGLHMERRDWESAKNSIERTYGRSSRAHRLTLDTLSAAIXSRRMLSPRLAG*
JGI12032J12867_1005712	JGI12032J12867_10057121	F070529	VGDLNRSTQHLLILLDKEVADGDVTDIVHGEAEG*
JGI12032J12867_1005774	JGI12032J12867_10057741	F034378	VQVLDFNTGIDFGVTGNLKEFSPAGFSPRPDKVSTWSEKPFVELSFRVPPLRRDLGITVQVFPFLPDGAPIAKQDCWVYVNGLMVHFCSITAPSEIAFTVSREIISPRANRLSFVLPNAISPSELELGDDLRKLGLAFVKLSAAQV*
JGI12032J12867_1005857	JGI12032J12867_10058571	F008956	MSAPGPPWTPEKDGLLRSMGAAGESAAAIATLLKHSPHAVRKRAHLLKIKLARSPPGLKAKGK*
JGI12032J12867_1005940	JGI12032J12867_10059402	F044126	MHRLDFKQASETVKAVDEELEALLRVVWGQAARERQRDLCFFLARYPYKHFVLKNGRPLDPDGQPLRADLLVANLLPVGLILDNVLEVIDEVIRRDEVIELPQSLLFKRQLIGLWELIDQQLTVEGRPVSNWTVSSGSRSLRFLEFP
JGI12032J12867_1006000	JGI12032J12867_10060001	F003846	MRTGHMSVSGLSITFALLLALWEVYFFGFAGERALGPLDGTLGLFTPERLGFNMAWLTWAYLSFQLISIPFALPSARTRFIGVLDGMASLVPLAVVLVVVFGKSNLLGTPQRWETAILLILVTATDLFGGYAFNIALSRRMFDIGSTQPSA*
JGI12032J12867_1006104	JGI12032J12867_10061041	F086005	PSILPYPDSCLGTSPHQQGWDTKMEKLSYGGIDVSRLGS*
JGI12032J12867_1006291	JGI12032J12867_10062913	F048591	MDPAVAGLDFAKAGIVLANMIESYLAGGAPPSNPEGAVHDKPQDCRSTSV
JGI12032J12867_1006294	JGI12032J12867_10062942	F087447	RALLDEAVSRAIQAEAQQQGETAAAHDLNRQCAEILKFIAEKL*
JGI12032J12867_1006428	JGI12032J12867_10064281	F079172	MMGTVALWERVKTAVRGDENVRWNFWTILLSPLIAGIAEIAAAKSSQQFGREEEKEK*
JGI12032J12867_1006584	JGI12032J12867_10065842	F001983	MTRKNTWARLAVAVVLSLPMTACKDTKTLQENEQLKAHVAELQKENGQLGNNLETMTAARDELTKENEALKTEIKARKTKQSGTKATSRKRHRR*
JGI12032J12867_1006584	JGI12032J12867_10065843	F005852	MKTFEAQFRYRDRNEGTVESTVKVDASSLPGAVGKAVREFVKGLDRKQRFDMN
JGI12032J12867_1006625	JGI12032J12867_10066251	F023008	DARKGALLRMRSNSLKHNDLMLRSERRERLEAWTASDSQI*
JGI12032J12867_1006652	JGI12032J12867_10066521	F014460	ERVAANVAEAEAQKGVRGTARRVRKALTGKQAPSKKGKK*
JGI12032J12867_1006840	JGI12032J12867_10068403	F097990	IRLPLAEGRTLAMIHALGRVLHSEIDDSHMRLDAEVPASIAKRLRLKEYAVEETFPRSLS
JGI12032J12867_1007012	JGI12032J12867_10070122	F043693	MSRKPVTHWTIEELNKVVVRKFQTAKKYQPGPERQKLLREAKRYQNLLETKKSLSAE
JGI12032J12867_1007072	JGI12032J12867_10070722	F054445	SGRGAGKAIELTWGGLCRVPISELREPRGDLTATQESADGIVGQAVGKASEALQGRKAEQRIGRAGNDGRRPERLGVASRTGNS*
JGI12032J12867_1007260	JGI12032J12867_10072601	F018572	MPFDGVGLGLDERIGKIDKVIDLLGTPDRWCKGTLKTHDGRRCIRGAIMAVDGVGTLQPAVLRAINEVTGRHYRRIESFNDHPDTDHGQVVEVLARARDDLVAGRLAVLRSKPPAPTGWR
JGI12032J12867_1007666	JGI12032J12867_10076662	F003776	MKQSELDSMSLDELFMLHEQLTATLEARITAERKALKDRLKEATSRK*
JGI12032J12867_1007845	JGI12032J12867_10078451	F008328	MTNKSSSTTITSAEVHQLLRTAARQLSAREEKTVRMRSGMSLGRNEVLPRRGQDNPEARAELLALEIELKQKLAARSAVTKGAAPAVRTKEKDKIIRALRRLK*
JGI12032J12867_1008190	JGI12032J12867_10081901	F001278	NEKIHSIRPVPSSANGWMYFPHQRGDVLDFSLTSFPCAKPHVEDRVSTRAFQKSSALAEAEIVPYLRRAELARSLSELFGCRIRENKKGSGLYAMPSEAQRSICGCETQNLRFELCANELRASLVLPSGEVLRDLPVVDHDWRNFVDAALALNRGANRLPRLERFLNSHFHYKIMSCPHHFIRLGLTRPYHDLCWLMLDTLFPLPRQEW
JGI12032J12867_1008193	JGI12032J12867_10081931	F104848	MRVRSLLVLGIVLLFGTAAFAQDYAKIEVPLNYSYMRFNPENS
JGI12032J12867_1008851	JGI12032J12867_10088511	F035791	MEPLALAIVFVLALLVLLRRPGVFSPVPLAASARPWPATPAPGDDEEEQLPETDRAXRPLLPWGVAAVAALRLALLLTLH
JGI12032J12867_1008891	JGI12032J12867_10088911	F072651	RYDPDVRPYRTDDLEQCAQILDKASSGIDWALVWSAEHLKNQLQSPLSGTFVFERDGRVRGMVNYHLLLLQGREPVRTALIDLWADDGLTGAQRVRLLSHLCTDLRERDVHLVMALRCAMMPASAFAANLFLPTPAQFRMGALFTGGPVPLPLPKTWSIVMM*
JGI12032J12867_1009089	JGI12032J12867_10090892	F002091	YPIAVALTIIVAILSAYPLRRLASIRPASVFRGEA*
JGI12032J12867_1009258	JGI12032J12867_10092581	F049913	MSDSLIVQFVGYEVSSLMREYRFSVRESNNEPREFTLTIANAAFDCRRARFQDAPDICSVRLRRELAADGNHPANTHFQITDEELDEYRGRHSPKTSAS
JGI12032J12867_1009659	JGI12032J12867_10096592	F022770	MKTNWPALRHGYLILASMALANSPVLAQSPAGTTVTAAVISSVAITQAPERAAVRVEGEGRLDVHAGRMQNPDRLVLDFAGARLA
JGI12032J12867_1009803	JGI12032J12867_10098031	F001555	MALAVWTEPALARSYLNCLAKKVMIVDAPRGSTSSSIEENXGFWIDEAAKTLVLXDGTPLTVRRLDDSWISAARGDMSYEFDRQNGNLTYASSTTKEGSATIIIGSGRCKIAVGPAG*
JGI12032J12867_1010026	JGI12032J12867_10100261	F015925	AGQRSRTVREDWFAWLPEEMDQLFGATRSELECSNGILSVALDEALALCEQEQFTVAKERVTAFAGLFDRLAVRLRLVIRTIEDHGSHFGTLPNVTALASENFRGTTAQRISFMDNLLARIVFRGRTRFFHKLHALKEIIEELQKETRAIVEDVSYGALVYPGRTWRELEVLGYDLNTCMGETTVVLKSFFCVL
JGI12032J12867_1010060	JGI12032J12867_10100601	F022515	FAPASDSGLFLXTXGFVLRSDARSHSDYNLPMARARKLFPIYGSALANNMFTALGRGRVVDRFVAAYVAEYNRAAILGGASRDRELAETIGREAMLAMIHEVPQVLPRFFGKKQHATLKEEEKTAMDAFFLELMAALGRVWGWNAQDRRQFGHDLDLYSECAARPVKLAKGRKRGKVRGEDPPFIGRVALLLD
JGI12032J12867_1010078	JGI12032J12867_10100782	F095963	AGTDPESNWRSWQTLQFGPLILPHLAEVVDLAVRHSLREIVFLDRSLQPFLSPSLSQRSKLAAERLLQARPPKGDRMVARLQEAIRTGETPGHFVTLFAVRAIAFSIPARTAIFAYVLLELMLELPDREQIENLFTEAAKTVNDYYREGLNLLAEKLHA*
JGI12032J12867_1010282	JGI12032J12867_10102822	F002729	MTYEPLYERFEVLGSDGTRLGVQFVRSGFLAQGDRPELFFFRINEEETVVAISGASLARFERGRRRLSREQKIDLAGRWLKRQMEAAMPLNSGSLYIQDDELAYLGNELDFTE*
JGI12032J12867_1010413	JGI12032J12867_10104131	F011895	MKFLAKSRIGTLLVVVAASTALFAQNSGPDKHQNHAGVLDARQIVGLSVAALERSWQARDHYIYMERDEDRRLDSLGQVKSENIDVTRMILVNGARFEQLMEHNGQPPSAAD
JGI12032J12867_1011263	JGI12032J12867_10112632	F023907	DGKLRQCYVYEIRIDGVVRYIGKGRNGRIYSHLIDAKRTASRSDVKIRNLSPHFRKMLVSAVRRGSNIAEKMVASNLTDGEAYTIERQMIGNYHKRYAGQLWNTIDERFMDPKYLPKKWSNPVNPLYRLSRPLNELLDRSIARPSCTPPIATAE*
JGI12032J12867_1011951	JGI12032J12867_10119511	F056104	MSPFLGPQPWEAPDPLPVMRRELKLLLIEMNLLRIEVEQSRSIREEAQAREAFFSASVKQLTEGRDKWRREAERLRDLIEQGPPWSLFWRRLVDSFAASRRSASEWHRA*
JGI12032J12867_1012168	JGI12032J12867_10121682	F074951	MTTSPSEFRVSTQGDFMQRTRYPERRRTTRLSLQVPLTVRCRLPEGETIDLKASTYSVSANGALVLMDTPLIPGQNVRVINEMTSESTECFVTSLREKRERRFVGIGFANPNIDFWHIVF
JGI12032J12867_1012241	JGI12032J12867_10122412	F003881	IIAELRTCAECEKAWGIVVVPVVDDISIATWTVSRFHRGQSNGYACDRALQRIVPHYQRLYDLAQKH*
JGI12032J12867_1012268	JGI12032J12867_10122682	F014319	MPLPRWALALADDNGRSGSTDAALASVISLSHLDERALVAEAQAGSRAA
JGI12032J12867_1013098	JGI12032J12867_10130981	F006933	LFLDARDTLAVASDLHLDRTATSNLLLAHSSTFWDTRSAIRTQILSHVVPHVEDLFLLVNAKPAIPEGREFEEITIPRLQRLRELCEAHGAKLILLVPPTLSSESAVSQMADAARTTGVDISVPIDPAALSAKFYRPDGMHLNPEGAVLFTSALAKDLPERVVTHDTQASRIVRSI
JGI12032J12867_1013248	JGI12032J12867_10132481	F056441	MKSGWANGLRGIFALALLTGAAPTHAQTPQGTSVEGVAKEEPKIVAIRIVKEDGQVLSDSPTGIAVESGKALDRGKIADSLRALYRTGDYADLKAVVTPVADGVRLDFVVRENLFFNQVRIEGLTAPPSDASAAAAMQLTLGQTYRQAAVSEALERLRETLRDEGLYLAEVSAET
JGI12032J12867_1013434	JGI12032J12867_10134342	F035400	MLALVSPPATGTGDCPTTGDAFQAALTKVTNALRNYEQCVSASKGQDKCAAEMQQLDDAHDDFEEAVNDYKQACP*
JGI12032J12867_1013608	JGI12032J12867_10136081	F040312	LLVLALYVLYFRLARTTAWRGARASKLCIFNFVIVVLSFTVVNLYLSHSHRYF*
JGI12032J12867_1014141	JGI12032J12867_10141411	F025585	MPTDHLFPKGAATLRDSQPMIANKLELSPCAVSVLGQLFVEGPTSDNDITSRAGRCDLVSAGLAFHEAGLSSLTP
JGI12032J12867_1014650	JGI12032J12867_10146501	F009566	VFRSLGIFYPGLPQIVFGPLMAFLLLLLFLKTGQPMVFPVIGFLRAFSLSFVFPANLEHSGTLLAAIVAGGIAAMLLNNAERSRPGVWLPTLAGLYAGLYAACNYLTTFVFGPPAQNTVILGSPLKAVGVTIGSVVLGTVLGLLACRLMRPLQASIVAPLAPRFGF*
JGI12032J12867_1014867	JGI12032J12867_10148672	F006897	MKRKKPSKSSASFANPEIQQIEQLLQFMTEHNLEEFEYSRGDLRIRLRKPSS
JGI12032J12867_1014926	JGI12032J12867_10149262	F057650	MADERYVVMTVECQRCKTKQKVHVAARSGFAQMGSQTIPCIKCEKDFDVMVPDKIIRGPFPV*
JGI12032J12867_1014983	JGI12032J12867_10149831	F009895	MLSGAIFGRVDRTMAERAVRGNRPLEMSKPTYRELATNFDLWCKFVLLEEQVSEREFNEMSIDEKLDILQGCFGHEIHALSPPPPTAAAARA*
JGI12032J12867_1015098	JGI12032J12867_10150982	F101541	MRETIDFLRKSAEDLRELALSAPDISDHLRRLADELDATATDLEQRGSATRR*

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300000912: Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA Ref_M3

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences