Metagenome Family F099972

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F099972
Family Type	Metagenome
Number of Sequences	103
Average Sequence Length	61 residues
Representative Sequence	MPKAITGKRLLNLPQAAEYSAKSYERGLEEGRRQMQAEMLTALEALSAEAKEDIERKLNEKDN
Number of Associated Samples	29
Number of Associated Scaffolds	103

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	80.20 %
% of genes near scaffold ends (potentially truncated)	37.86 %
% of genes from short scaffolds (< 2000 bps)	79.61 %
Associated GOLD sequencing projects	21
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.44

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (68.932 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Pond Water (57.282 % of family members)
Environment Ontology (ENVO)	Unclassified (57.282 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Water (non-saline) (58.252 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 54.95% β-sheet: 0.00% Coil/Unstructured: 45.05%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.44
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.44
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 103 Family Scaffolds
PF05866	RusA	19.42
PF00462	Glutaredoxin	18.45
PF00145	DNA_methylase	1.94
PF03796	DnaB_C	0.97
PF09588	YqaJ	0.97

COG ID	Name	Functional Category	% Frequency in 103 Family Scaffolds
COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	Replication, recombination and repair [L]	19.42
COG0270	DNA-cytosine methylase	Replication, recombination and repair [L]	1.94
COG0305	Replicative DNA helicase	Replication, recombination and repair [L]	0.97
COG1066	DNA repair protein RadA/Sms, contains AAA+ ATPase domain	Replication, recombination and repair [L]	0.97

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	68.93 %
All Organisms	root	All Organisms	31.07 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	68.93 %
Viruses	superkingdom	All Organisms → Viruses	29.13 %
cellular organisms	root	All Organisms → cellular organisms	1.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	68.93 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	18.45 %
Duplodnaviria	clade	All Organisms → Viruses → Duplodnaviria	10.68 %
Archaea	superkingdom	All Organisms → cellular organisms → Archaea	0.97 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	0.97 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	68.93 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	18.45 %
Heunggongvirae	kingdom	All Organisms → Viruses → Duplodnaviria → Heunggongvirae	10.68 %
Euryarchaeota	phylum	All Organisms → cellular organisms → Archaea → Euryarchaeota	0.97 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	0.97 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	68.93 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	18.45 %
Uroviricota	phylum	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota	10.68 %
Euryarchaeota	phylum	All Organisms → cellular organisms → Archaea → Euryarchaeota	0.97 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	0.97 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	68.93 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	18.45 %
Caudoviricetes	class	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	10.68 %
Euryarchaeota	phylum	All Organisms → cellular organisms → Archaea → Euryarchaeota	0.97 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	0.97 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	68.93 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	18.45 %
environmental samples	no rank	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples	10.68 %
Euryarchaeota	phylum	All Organisms → cellular organisms → Archaea → Euryarchaeota	0.97 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	0.97 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	68.93 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	18.45 %
uncultured Caudovirales phage	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	10.68 %
Euryarchaeota	phylum	All Organisms → cellular organisms → Archaea → Euryarchaeota	0.97 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	0.97 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000385\|PR_CR_10_Liq_1_inCRDRAFT_1014442	Not Available	2338	Open in IMG/M
3300001533\|MLSed_10032034	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	3178	Open in IMG/M
3300003629\|P4metv_100381	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	5246	Open in IMG/M
3300003629\|P4metv_101044	All Organisms → cellular organisms → Archaea → Euryarchaeota	2815	Open in IMG/M
3300003629\|P4metv_101206	All Organisms → Viruses → Predicted Viral	2577	Open in IMG/M
3300003629\|P4metv_101219	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	2554	Open in IMG/M
3300003629\|P4metv_101539	Not Available	2185	Open in IMG/M
3300003629\|P4metv_107956	Not Available	738	Open in IMG/M
3300003629\|P4metv_109899	Not Available	626	Open in IMG/M
3300003629\|P4metv_110021	Not Available	619	Open in IMG/M
3300003635\|p5metav_100442	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	5846	Open in IMG/M
3300003635\|p5metav_105875	All Organisms → Viruses → Predicted Viral	1210	Open in IMG/M
3300003635\|p5metav_106454	Not Available	1131	Open in IMG/M
3300005192\|Ga0073159_1002976	Not Available	1372	Open in IMG/M
3300005198\|Ga0073164_1024863	Not Available	772	Open in IMG/M
3300005198\|Ga0073164_1026050	Not Available	755	Open in IMG/M
3300007532\|Ga0102942_1064710	All Organisms → Viruses → Predicted Viral	1199	Open in IMG/M
3300007532\|Ga0102942_1103526	Not Available	888	Open in IMG/M
3300007532\|Ga0102942_1163865	Not Available	657	Open in IMG/M
3300007537\|Ga0102934_1043296	All Organisms → Viruses → Predicted Viral	2375	Open in IMG/M
3300007537\|Ga0102934_1203489	Not Available	903	Open in IMG/M
3300007537\|Ga0102934_1233815	Not Available	830	Open in IMG/M
3300007537\|Ga0102934_1257120	Not Available	784	Open in IMG/M
3300007537\|Ga0102934_1260956	Not Available	777	Open in IMG/M
3300007537\|Ga0102934_1386776	Not Available	615	Open in IMG/M
3300007609\|Ga0102945_1018578	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1549	Open in IMG/M
3300007609\|Ga0102945_1019166	All Organisms → Viruses → Predicted Viral	1521	Open in IMG/M
3300007609\|Ga0102945_1019228	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1518	Open in IMG/M
3300007609\|Ga0102945_1022433	All Organisms → Viruses → Predicted Viral	1379	Open in IMG/M
3300007609\|Ga0102945_1023632	Not Available	1334	Open in IMG/M
3300007609\|Ga0102945_1035530	All Organisms → Viruses → Predicted Viral	1025	Open in IMG/M
3300007609\|Ga0102945_1038687	Not Available	971	Open in IMG/M
3300007609\|Ga0102945_1073308	Not Available	638	Open in IMG/M
3300007609\|Ga0102945_1100501	Not Available	520	Open in IMG/M
3300007611\|Ga0102927_1005604	Not Available	2771	Open in IMG/M
3300007611\|Ga0102927_1032768	Not Available	1334	Open in IMG/M
3300007611\|Ga0102927_1083669	Not Available	959	Open in IMG/M
3300007611\|Ga0102927_1084340	Not Available	956	Open in IMG/M
3300007611\|Ga0102927_1197807	Not Available	688	Open in IMG/M
3300007611\|Ga0102927_1213271	Not Available	666	Open in IMG/M
3300007611\|Ga0102927_1341529	Not Available	540	Open in IMG/M
3300007611\|Ga0102927_1363254	Not Available	524	Open in IMG/M
3300007616\|Ga0102936_1137164	Not Available	751	Open in IMG/M
3300007628\|Ga0102937_1025566	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	2417	Open in IMG/M
3300007628\|Ga0102937_1267047	Not Available	673	Open in IMG/M
3300007628\|Ga0102937_1319822	Not Available	612	Open in IMG/M
3300007628\|Ga0102937_1476093	Not Available	500	Open in IMG/M
3300007631\|Ga0102939_1209452	Not Available	529	Open in IMG/M
3300007633\|Ga0102940_1241052	Not Available	748	Open in IMG/M
3300007668\|Ga0102935_1109786	Not Available	958	Open in IMG/M
3300007668\|Ga0102935_1134539	Not Available	851	Open in IMG/M
3300007668\|Ga0102935_1322973	Not Available	516	Open in IMG/M
3300007668\|Ga0102935_1337920	Not Available	503	Open in IMG/M
3300007723\|Ga0102928_1210323	Not Available	869	Open in IMG/M
3300007984\|Ga0102931_1140023	Not Available	902	Open in IMG/M
3300007984\|Ga0102931_1304504	Not Available	581	Open in IMG/M
3300008963\|Ga0102930_1022607	Not Available	1646	Open in IMG/M
3300008963\|Ga0102930_1024407	Not Available	1576	Open in IMG/M
3300008963\|Ga0102930_1046512	All Organisms → Viruses → Predicted Viral	1087	Open in IMG/M
3300008963\|Ga0102930_1047992	All Organisms → Viruses → Predicted Viral	1067	Open in IMG/M
3300008963\|Ga0102930_1051078	All Organisms → Viruses → Predicted Viral	1029	Open in IMG/M
3300008963\|Ga0102930_1063986	Not Available	904	Open in IMG/M
3300008963\|Ga0102930_1081313	Not Available	786	Open in IMG/M
3300008963\|Ga0102930_1090381	Not Available	739	Open in IMG/M
3300008963\|Ga0102930_1102067	Not Available	689	Open in IMG/M
3300008963\|Ga0102930_1107899	Not Available	668	Open in IMG/M
3300008963\|Ga0102930_1125963	Not Available	613	Open in IMG/M
3300009061\|Ga0102938_10187312	All Organisms → Viruses → Predicted Viral	1125	Open in IMG/M
3300009061\|Ga0102938_10477328	Not Available	634	Open in IMG/M
3300017813\|Ga0188953_11129	All Organisms → cellular organisms → Bacteria	3417	Open in IMG/M
3300017813\|Ga0188953_12684	Not Available	1927	Open in IMG/M
3300017813\|Ga0188953_15482	Not Available	934	Open in IMG/M
3300026094\|Ga0209937_1002617	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	5070	Open in IMG/M
3300026094\|Ga0209937_1007237	All Organisms → Viruses → Predicted Viral	2818	Open in IMG/M
3300026094\|Ga0209937_1011072	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	2146	Open in IMG/M
3300026094\|Ga0209937_1012210	Not Available	2016	Open in IMG/M
3300026094\|Ga0209937_1014072	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1831	Open in IMG/M
3300026094\|Ga0209937_1016192	All Organisms → Viruses → Predicted Viral	1671	Open in IMG/M
3300026094\|Ga0209937_1017870	Not Available	1565	Open in IMG/M
3300026094\|Ga0209937_1037328	Not Available	923	Open in IMG/M
3300026094\|Ga0209937_1040308	Not Available	873	Open in IMG/M
3300026094\|Ga0209937_1045418	Not Available	800	Open in IMG/M
3300026094\|Ga0209937_1047304	Not Available	776	Open in IMG/M
3300026094\|Ga0209937_1077592	Not Available	531	Open in IMG/M
3300026094\|Ga0209937_1083738	Not Available	500	Open in IMG/M
3300026097\|Ga0209953_1000643	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	12152	Open in IMG/M
3300026097\|Ga0209953_1002148	Not Available	5532	Open in IMG/M
3300026097\|Ga0209953_1012730	All Organisms → Viruses → Predicted Viral	1655	Open in IMG/M
3300026097\|Ga0209953_1040175	Not Available	695	Open in IMG/M
3300026097\|Ga0209953_1056664	Not Available	522	Open in IMG/M
3300026105\|Ga0209923_1016900	All Organisms → Viruses → Predicted Viral	1108	Open in IMG/M
3300026105\|Ga0209923_1019837	All Organisms → Viruses → Predicted Viral	1024	Open in IMG/M
3300026105\|Ga0209923_1032741	Not Available	813	Open in IMG/M
3300026105\|Ga0209923_1052033	Not Available	666	Open in IMG/M
3300026105\|Ga0209923_1053147	Not Available	660	Open in IMG/M
3300026114\|Ga0209946_1050679	Not Available	1064	Open in IMG/M
3300026114\|Ga0209946_1091851	Not Available	686	Open in IMG/M
3300026172\|Ga0209964_1044246	All Organisms → Viruses → Predicted Viral	1164	Open in IMG/M
3300026180\|Ga0209938_1053386	All Organisms → Viruses → Predicted Viral	1254	Open in IMG/M
3300026197\|Ga0209925_1126199	Not Available	801	Open in IMG/M
3300026251\|Ga0209947_1032486	All Organisms → Viruses → Predicted Viral	2278	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	76.70%
Terrestrial	Environmental → Terrestrial	23.30%

Habitat	Taxonomy	Distribution
Non-Marine Saline And Alkaline	Environmental → Aquatic → Non-Marine Saline And Alkaline	74.76%
Soil	Environmental → Terrestrial → Soil	23.30%
Freshwater	Environmental → Aquatic → Freshwater	0.97%
Marine	Environmental → Aquatic → Marine	0.97%

Habitat	Taxonomy	Distribution
Saline	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline	57.28%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	23.30%
Hypersaline	Environmental → Aquatic → Non-Marine Saline And Alkaline → Hypersaline	14.56%
Unclassified	Environmental → Aquatic → Non-Marine Saline And Alkaline → Unclassified	2.91%
Unclassified	Environmental → Aquatic → Freshwater → Unclassified	0.97%
Unclassified	Environmental → Aquatic → Marine → Unclassified	0.97%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified	57.28%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	23.30%
Unclassified	Environmental → Aquatic → Non-Marine Saline And Alkaline → Hypersaline → Unclassified	11.65%
Microbial Mats	Environmental → Aquatic → Non-Marine Saline And Alkaline → Hypersaline → Microbial Mats	2.91%
Unclassified	Environmental → Aquatic → Non-Marine Saline And Alkaline → Unclassified → Unclassified	2.91%
Unclassified	Environmental → Aquatic → Freshwater → Unclassified → Unclassified	0.97%
Unclassified	Environmental → Aquatic → Marine → Unclassified → Unclassified	0.97%

Habitat	Taxonomy	Distribution
Pond Water	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Pond Water	57.28%
Pond Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Pond Soil	23.30%
Hypersaline Samples	Environmental → Aquatic → Non-Marine Saline And Alkaline → Hypersaline → Unclassified → Hypersaline Samples	7.77%
Hypersaline	Environmental → Aquatic → Non-Marine Saline And Alkaline → Hypersaline → Unclassified → Hypersaline	2.91%
Hypersaline Samples	Environmental → Aquatic → Non-Marine Saline And Alkaline → Hypersaline → Microbial Mats → Hypersaline Samples	2.91%
Saline Water	Environmental → Aquatic → Non-Marine Saline And Alkaline → Unclassified → Unclassified → Saline Water	2.91%
Benthic	Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Benthic	0.97%
Enviromental	Environmental → Aquatic → Marine → Unclassified → Unclassified → Enviromental	0.97%
Hypersaline Water	Environmental → Aquatic → Non-Marine Saline And Alkaline → Hypersaline → Unclassified → Hypersaline Water	0.97%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000385	Marine microbial community from Cabo Rojo, Puerto Rico - PR CR 10% Liquid 1	Environmental	Open in IMG/M
3300001533	Benthic freshwater microbial communities from British Columbia, Canada	Environmental	Open in IMG/M
3300003629	Hypersaline viral communities from Bras del Port, Santa Pola, Spain - Lo Valdivia P4	Environmental	Open in IMG/M
3300003635	Hypersaline viral communities from Bras del Port, Santa Pola, Spain - Lo Valdivia P5	Environmental	Open in IMG/M
3300005192	E5 T9	Environmental	Open in IMG/M
3300005198	E2 T9	Environmental	Open in IMG/M
3300007023	Non-marine hypersaline water viral communities from Mallorca, Spain, 2014 - E1 T9	Environmental	Open in IMG/M
3300007532	Salt pond water microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG R2_C_H2O_MG	Environmental	Open in IMG/M
3300007537	Salt pond soil microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG R2_A_D1_MG	Environmental	Open in IMG/M
3300007609	Salt pond water microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG R2_restored_H2O_MG	Environmental	Open in IMG/M
3300007611	Salt pond water microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG R1_A_H2O_MG	Environmental	Open in IMG/M
3300007616	Salt pond water microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG R2_A_H2O_MG	Environmental	Open in IMG/M
3300007628	Salt pond soil microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG R2_B_D1_MG	Environmental	Open in IMG/M
3300007631	Salt pond water microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG R2_B_H2O_MG	Environmental	Open in IMG/M
3300007633	Salt pond soil microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG R2_C_D1_MG	Environmental	Open in IMG/M
3300007668	Salt pond soil microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG R2_A_D2_MG	Environmental	Open in IMG/M
3300007723	Salt pond soil microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG R1_B_D1_MG	Environmental	Open in IMG/M
3300007984	Salt pond soil microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG R1_C_D1_MG	Environmental	Open in IMG/M
3300008963	Salt pond water microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG R1_B_H2O_MG	Environmental	Open in IMG/M
3300009061	Salt pond soil microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG R2_B_D2_MG	Environmental	Open in IMG/M
3300017813	Saline water viral communities from Saloum River inverse estuary, Senegal ? P2	Environmental	Open in IMG/M
3300026094	Salt pond water microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG R1_B_H2O_MG (SPAdes)	Environmental	Open in IMG/M
3300026097	Salt pond water microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG R2_restored_H2O_MG (SPAdes)	Environmental	Open in IMG/M
3300026105	Salt pond water microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG R1_A_H2O_MG (SPAdes)	Environmental	Open in IMG/M
3300026114	Salt pond water microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG R2_A_H2O_MG (SPAdes)	Environmental	Open in IMG/M
3300026172	Salt pond soil microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG R2_B_D1_MG (SPAdes)	Environmental	Open in IMG/M
3300026180	Salt pond soil microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG R2_C_D1_MG (SPAdes)	Environmental	Open in IMG/M
3300026197	Salt pond soil microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG R2_A_D1_MG (SPAdes)	Environmental	Open in IMG/M
3300026251	Salt pond soil microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG R2_B_D2_MG (SPAdes)	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
PR_CR_10_Liq_1_inCRDRAFT_10144428	3300000385	Enviromental	MPRANKGKRLLNLPEAAQYSVWSYQRGVEHGKREGRAEVLKALESLSADIRQDIEKKIKEEENK*
MLSed_100320341	3300001533	Benthic	HTGKRLLNLPQAAEYSAWSYERGVEHGRREMQLEMMQALESLSEEAKKDLERELNEKHN*
P4metv_1003814	3300003629	Hypersaline Samples	MPKANKGKRMINLPEAAQYSAWSYKRGVEHGQRIGRQEILDALEHLSAEIKQDIERVIHEKKQNS*
P4metv_1010445	3300003629	Hypersaline Samples	MPKATTGKRLLNLPQAAEYSAKSYERGLEEGRRQMQAEMLNALEALSAEAKEDLKEQLNDL*
P4metv_1012067	3300003629	Hypersaline Samples	MPKAHTGKRLLNLPQAAEYSAWSYERGVEHGRREMREEMLKALEALSDEAKADLERELNEKK*
P4metv_1012195	3300003629	Hypersaline Samples	MPKANKGKRLLNLQQAAEHSAWSFQRGVEHGRREMQAEMMKALESLSAEAKEDLEKKLRDL*
P4metv_1015392	3300003629	Hypersaline Samples	MPKANTGKRLLNLPQAAEYSSWAYKRGVEHGRREMQAEMMKALEALSAEAKKDLEEKLNDL*
P4metv_1079561	3300003629	Hypersaline Samples	MINLPEAAQYSAWSYQRGVEHGQRIGRQEILDALEHLSDEIKQDIERVIHEKKQNG*
P4metv_1098991	3300003629	Hypersaline Samples	MPKANTGKRLLNLPQAAEYSAKSYERGFEEGRRQMLVEMLDALESLSEEAKQDIERKINENH*
P4metv_1100211	3300003629	Hypersaline Samples	MPKANTGKRLLNLPQAAEYSSWSYQRGVEHGRREMQAEMMKALEALSAEAKKDLEKKLRDL*
p5metav_10044210	3300003635	Hypersaline Samples	MPKATTGKRLLNLPQAAEYSAKSYERGLEEGRRQMQAEMLNALEALSAEAKKDLKEQLNDL*
p5metav_1058752	3300003635	Hypersaline Samples	MPKANTGKRLLNLPQAAEYSSWAYQRGVEHGRREMQAEMMKALEALSAEAKKDLEKKLRDL*
p5metav_1064544	3300003635	Hypersaline Samples	MPKAINGKRLLNLPQAAQYFAWSYQRGVEHGRREMQAEMMKALESLSAEAKEDLEKK
Ga0073159_10029764	3300005192	Hypersaline	MPKANKGKRLINLPEAAQYSAWSYQRGVEHGRREGRAEVLKALESLSADIKKDVEQKLNDL*
Ga0073164_10248631	3300005198	Hypersaline	MPKAINGKRLLNLPQAAEYSKWSYERGVEHGRREMQAEMMKAIEALSAEAKKDLEEKLNDL*
Ga0073164_10260502	3300005198	Hypersaline	MPKANKGKRLINLPEAAQYSAWSYWRGVEHGRREGRAEVLKALESLSADIKKDVEQKLNDL*
Ga0080109_1099981	3300007023	Hypersaline Water	PEAAQYSAWSYWKGVEHGKREGRAEVLKALESLSAYIKKDVEQKLNDL*
Ga0102942_10647103	3300007532	Pond Water	MPKAINGKRLLNLPQAAEYSKWSYERGVEHGRREMQAEIMKALEALSTEAKKDLEEKLNDL*
Ga0102942_11035264	3300007532	Pond Water	MPKANTGKRLLNLPQAAEYSAKSYERGFEEGRRQMLVEMLDALESLSEEAKQDLERKINENN*
Ga0102942_11638651	3300007532	Pond Water	KANKGKRLLNLPEASQYSAWSYWRGVEHGRREGRAEVLKALESLSADIKKDLENKISDL*
Ga0102934_10432965	3300007537	Pond Soil	MPKANKGKRLLNLPEASQYSAWSYWRGVEHGRREGRAEVLKALESLSADIKKDVENKISDL*
Ga0102934_12034894	3300007537	Pond Soil	MPKANTGKRLLNLPQAAEYSAKSYERGLEEGRRQMQAEMLTALEALSAEAKEDMERKLNEKDN*
Ga0102934_12338153	3300007537	Pond Soil	MPKANTGKRLLNLPQAAEYSAKSYERGFEEGRRQMQSEMLNALESLSEEAKQDLERKINENN*
Ga0102934_12571202	3300007537	Pond Soil	MPKATTGKRLLNLPQAAEYSAKSYERGLEEGRRQMQAEMLTALEALSAEAKEDIERKLNEKDN*
Ga0102934_12609564	3300007537	Pond Soil	MPKATTGKRLLNLPQAAEYSAKSYERGLEEGRRQMQAEMLTALEALSAEAKKDIERELNEKDN*
Ga0102934_13867762	3300007537	Pond Soil	MPKATTGKRLLNLPQAAEYSAKSYERGLEEGRRQMQAEMLTALEALSAEAKEDIERKLNEKDN*ETTNQAIPKHNQP
Ga0102945_10185786	3300007609	Pond Water	MPKANTGKRLLNLPQAAEYSAKSYERGFEEGRRQMQSEMLNALESLSAEIK
Ga0102945_10191661	3300007609	Pond Water	INGKRLLNLPQAAEYSKWSYERGVEHGRREMQAEMMKALEALSTEAKKDLEEKLNDL*
Ga0102945_10192281	3300007609	Pond Water	MPKAINGKRLLNLPQAAQYSAWSYERGVEHGRREMQAEMMKALEALSAEAKEDLKEKLNDL*
Ga0102945_10224333	3300007609	Pond Water	MPKAITGKRLLNLPQAAEYSAKSYERGLEEGRRQMQAEMLTALEALSAEAKEDIERKLNEKDN*
Ga0102945_10236325	3300007609	Pond Water	MPKAINGKRLLNLPQAAEYSKWSYERGVEHGRREMQAEMMKALEALSAEAKEDLKEKLNDL*
Ga0102945_10355304	3300007609	Pond Water	MPKATTGKRLLNLPQAAEYSAKSYERGLEEGRRQMQAEMMKALEALSAEAKKDIERKLNEKQNNN*
Ga0102945_10386872	3300007609	Pond Water	MMPKANTGKRLLNLPQAAEYSAKSYERGFEEGRRQMQSEMLNALESLSKEIKEDLERKINENN*
Ga0102945_10733083	3300007609	Pond Water	MPKAITGKRLLNLPQAAEYSAKSYERGLEEGRRQMQAEMLTALEALSAEAKKDIERELNEKDN*
Ga0102945_10953303	3300007609	Pond Water	MPKAITGKRLLNLPQAAEYSAKSYERGLEEGRRQMQAEMLTALEALSAE
Ga0102945_11005012	3300007609	Pond Water	MPKAHKGKRLLNLQQAAEHSAWSYQRGVEHGRREMQAEMMKALESLSAEAKEDLEKKLRDL*
Ga0102927_10056044	3300007611	Pond Water	MPKANKGKRLLNLPEASQYSAWSYWRGVEHGRREGRAEVLKALESLSADIKKDLENKISDL*
Ga0102927_10327684	3300007611	Pond Water	MPKAITGKRLLNLPQAAEYSAKCYERGLEEGRRQMQAEMLTALEALSAEA
Ga0102927_10836694	3300007611	Pond Water	MPKATTGKRLLNLPQAAEYSAKSYERGLEEGRRQMQAEMMQALEALSAEAKKDIERKLNEKQNNN*
Ga0102927_10843403	3300007611	Pond Water	MPKANTGKRLLNLPQAAEYSAKSYERGLEEGRRQMQAEMLTALEALSAEAKEDIERKLNEKQNNN*
Ga0102927_11978073	3300007611	Pond Water	MPKAINGKRLLNLPQAAEYSKWSYERGVEHGRREMQAEMMKALEALSTEAKKDLEEKLNDL*
Ga0102927_12132712	3300007611	Pond Water	MPKANTGKRLLNLPQAAEYSAKSYERGFEEGRRQMLVQMLNALESLSAEIKEDIERKINENN*
Ga0102927_13415291	3300007611	Pond Water	MPKAITGKRLLNLPQAAEYSAKSYERGLEEGRRQMQAEMLTALEALSAEAK
Ga0102927_13632542	3300007611	Pond Water	MMPKANTGKRLLNLPQAAEYSAKSYERGFEEGRRQMQSEMLNALESLSEEAKQDLERKINENN*
Ga0102936_11371641	3300007616	Pond Water	LNLPQAAEYSKWSYERGVEHGRREMQAEMMKALEALSSEAKEDLKEKLNDL*
Ga0102937_10255668	3300007628	Pond Soil	MMPKANTGKRLLNLPQAAEYSAKSYERGFEEGRRQMLVQMLNALESLSAEIKEDIERKINENN*
Ga0102937_12670472	3300007628	Pond Soil	MPKAINGKRLLNLPQAAEYSKWSYERGVEHGRREMQAEMMKALEALSTEAKEDLERHLNDL*
Ga0102937_13198221	3300007628	Pond Soil	MPKANKGKRLLNLPEASQYSAWSYWRGVEHGRREGRAEVLKALESLSADIKKDVEN
Ga0102937_14760933	3300007628	Pond Soil	KRLLNLPQAAEYSAKSYERGLEEGRRQMQAEMMQALEALSAEAKKDIERKLNEKQNNN*
Ga0102939_12094521	3300007631	Pond Water	TMPKAINGKRLLNLPQAAEYSKWSYERGVEHGRREMQAEMMKALEALSTEAKEDLERHLNDL*
Ga0102940_12410522	3300007633	Pond Soil	MPKATTGKRLLNLPQAAEYSAKSYERGLEEGRRQMQAEMLTALEALSAEAKKDIERELNEKQN*
Ga0102935_11097865	3300007668	Pond Soil	MPKATTGKRLLNLPQAAEYSAKSYERGLEEGRRQMQAEMLAALEALSAEAKKDIERELNEKDN*
Ga0102935_11345393	3300007668	Pond Soil	MPKAINGKRLLNLPQAAEYSKWSYERGVEHGRREMQAEMMKSFEALSYEAREDLKEKLNDL*
Ga0102935_13229731	3300007668	Pond Soil	ATTGKRLLNLPQAAEYSAKSYERGLEEGRRQMQAEMLTTLEALSAEAKEDIERELNEKDN
Ga0102935_13379201	3300007668	Pond Soil	RNRNPELCLNADRIRTSGLGGYVMPKATTGKRLLNLPQAAEYSAKSYERGLEEGRRQMQAEMMQALEALSAEAKKDIERKLNEKQNNN*
Ga0102928_12103233	3300007723	Pond Soil	MPKATTGKRLLNLPQAAEYSAKSYERGLEEGRRQMQAEMMQALEALSAEAKKDIERKLNENN*
Ga0102931_11400231	3300007984	Pond Soil	MMPKANTGKRLLNLPQAAEYSAKSYERGFEEGRRQMLVQMLNALESLSEEAKQDLERKINENN*
Ga0102931_13045042	3300007984	Pond Soil	MMPRANTGKRLLNLPQAAEYSAKSYERGFEEGRRQMLVQMLNALESLSAEIKEDIERKINENN*
Ga0102930_10226076	3300008963	Pond Water	MPKANKGKRLLNLPEASQYSAWSYWRGVEHGRREGRAEVLKALESLSADIK
Ga0102930_10244075	3300008963	Pond Water	MPKAINGKRLLNLPQAAQYSAWSYERGVEHGRREMQAEMMKALEALSAEAKEDLKEKVNDL*
Ga0102930_10465125	3300008963	Pond Water	VMPKANTGKRLLNLPQAAEYSAKSYERGLEEGRRQMQAEMLTALEALSAEAKKDIERELNEKQNNN*
Ga0102930_10479921	3300008963	Pond Water	LNLPEASQYSAWSYWRGVEHGRREGRAEVLKALESLSADIKKDVENKISDL*
Ga0102930_10510785	3300008963	Pond Water	YVMPKATTGKRLLNLPQAAEYSAKSYERGLEEGRRQMQAEMLTALEALSAEAKQDIERKLNEKDN*
Ga0102930_10639864	3300008963	Pond Water	MPKAINGKRLLNLPQAAQYSAWSYERGVEHGRREMQAEMMKALEALSAEAKKD
Ga0102930_10813134	3300008963	Pond Water	MPKAITGKRLLNLPQAAEYSAKSYERGLEEGRRQMQAEMLTALEALSAEAKKDIEREL
Ga0102930_10903811	3300008963	Pond Water	KANTGKRLLNLPQAAEYSAKSYERGLEEGRRQMQAEMLTALEALSAEAKEDMERELNEKDN*
Ga0102930_11020672	3300008963	Pond Water	MPKANKGKRLINLPEAAQYSAWSYQRGVEHGKRVGRAEVLKALESLSTEIKQDIERKLKNEEEN*
Ga0102930_11078994	3300008963	Pond Water	TGKRLLNLPQAAEYSAKSYERGLEEGRRQMQAEMMKALEALSAEAKEDIERKLNEKQNNN
Ga0102930_11259634	3300008963	Pond Water	MPKAITGKRLLNLPQAAEYSAKSYERGLEEGRRQMQAEMLTALEALSAEAKK
Ga0102938_101873125	3300009061	Pond Soil	GGYVMPKATTGKRLLNLPQAAEYSAKSYERGLEEGRRQMQAEMLTALEALSAEAKEDIERKLNEKDN*
Ga0102938_104773281	3300009061	Pond Soil	LPQAAEYSAKSYERGFEEGRRQMQSEMLNALESLSKEIKEDIERKINEQEK*
Ga0188953_111297	3300017813	Saline Water	MPKANTGKRLLNLPQAAEYSSWAFKRGVEHGRREMREEMLKALEALSAEAKKELENKIDL
Ga0188953_126844	3300017813	Saline Water	MPKANTGKRLLNLPQAAQYSAWSYERGVEHGRREMQAEMMKALESLSAEAKEDLEKKLRD
Ga0188953_154823	3300017813	Saline Water	MPKANKGKRLLNLPEAAQYSIWSYQRGVEHGKREGRKEVLAALESLSAEIKADIERKMNDEK
Ga0209937_10026177	3300026094	Pond Water	MPKATTGKRLLNLPQAAEYSAKSYERGLEEGRRQMQAEMMKALEALSAEAKKDIERKLNEKQNNN
Ga0209937_10072376	3300026094	Pond Water	MPKANKGKRLLNLPEASQYSAWSYWRGVEHGRREGRAEVLKALESLSADIKKDLENKISD
Ga0209937_10110724	3300026094	Pond Water	MPKATTGKRLLNLPQAAEYSAKSYERGLEEGRRQMQAEMLTALEALSAEAKEDMERKLNEKDN
Ga0209937_10122106	3300026094	Pond Water	MPKANTGKRLLNLPQAAEYSAKSYERGFEEGRRQMLVEMLDALESLSEEAKQDLERKINENN
Ga0209937_10140725	3300026094	Pond Water	MPKAITGKRLLNLPQAAEYSAKSYERGLEEGRRQMQAEMLTALEALSAEAKKDIERELNEKDN
Ga0209937_10161925	3300026094	Pond Water	MPKANTGKRLLNLPQAAEYSAKSYERGLEEGRRQMQAEMLTALEALSAEAKEDIERELNEKDN
Ga0209937_10178702	3300026094	Pond Water	MPKAINGKRLLNLPQAAEYSKWSYERGVEHGRREMQAEMMKALEALSSEAKEDLKEKLND
Ga0209937_10373284	3300026094	Pond Water	HVMPKANTGKRLLNLPQAAEYSAKSYERGLEEGRRQMQAEMLTALEALSAEAKKDIERELNEKQNNN
Ga0209937_10403082	3300026094	Pond Water	MPKAINGKRLLNLPQAAEYSKWSYERGVEHGRREMQAEMMKALEALSTEAKEDLERHLND
Ga0209937_10454183	3300026094	Pond Water	MPKANTGKRLLNLPQAAEYSAKSYERGFEEGRRQMLVEMLDALESLSEEAKEDLERK
Ga0209937_10473043	3300026094	Pond Water	MPKANTGKRLLNLPQAAEYSAKSYERGFEEGRRQMLVQMLNALESLSAEIKEDIERKINENN
Ga0209937_10775922	3300026094	Pond Water	MPKATTGKRLLNLPQAAEYSAKSYERGLEEGRRQMQAEMMKALEALSAEAKEDIERKLNEKDN
Ga0209937_10837381	3300026094	Pond Water	LRTSGLGGHVMPKATTGKRLLNLPQAAEYSAKSYERGLEEGRRQMQAEMMQALEALSAEAKKDIERKLNEKQNNN
Ga0209953_100064319	3300026097	Pond Water	MPKAINGKRLLNLPQAAQYSAWSYERGVEHGRREMQAEMMKALEALSAEAKEDLKEKLND
Ga0209953_100214814	3300026097	Pond Water	MPKAINGKRLLNLPQAAEYSKWSYERGVEHGRREMQAEMMKALEALSAEAKEDLK
Ga0209953_10127302	3300026097	Pond Water	MPKAINGKRLLNLPQAAEYSKWSYERGVEHGRREMQAEMMKALEALSTEAKKDLEEKLND
Ga0209953_10401754	3300026097	Pond Water	VMPKATTGKRLLNLPQAAEYSAKSYERGLEEGRRQMQAEMLTALEALSAEAKEDMERKLNEKDN
Ga0209953_10566642	3300026097	Pond Water	MPKAITGKRLLNLPQAAEYSAKSYERGLEEGRRQMQAEMLTALEALSAEAKKDIERELNEKDNXETTNQAIPKHNHPNREKSYA
Ga0209923_10169002	3300026105	Pond Water	MPKAITGKRLLNLPQAAEYSAKSYERGLEEGRRQMQAEMLTALEALSAEAKEDIERKLNEKDN
Ga0209923_10198372	3300026105	Pond Water	MPKATTGKRLLNLPQAAEYSAKSYERGLEEGRRQMQAEMMQALEALSAEAKKDIERKLNEKQNNN
Ga0209923_10327413	3300026105	Pond Water	MPKANTGKRLLNLPQAAEYSAKSYERGLEEGRRQMQAEMLTALEALSAEAKEDMERKLNEKDNXETT
Ga0209923_10520332	3300026105	Pond Water	MPKANTGKRLLNLPQAAEYSAKSYERGLEEGRRQMQAEMLTALEALSAEAKEDIERELNEKDNXETTL
Ga0209923_10531471	3300026105	Pond Water	MPKANTGKRLLNLPQAAEYSAKSYERGFEEGRRQMQSEMLNALESLSEEAKQDLERKINENN
Ga0209946_10506792	3300026114	Pond Water	MPKANKGKRLLNLPEASQYSASSYWRGVEHGRREGRAEVLKALESLSADIKKDVENKISD
Ga0209946_10918511	3300026114	Pond Water	MPKANTGKRLLNLPQAAEYSAKSYERGFEEGRRQMLVEMLDALESLSEEAKQDLER
Ga0209964_10442466	3300026172	Pond Soil	RTSRNRGHVMPKANTGKRLLNLPQAAEYSAKSYERGLEEGRRQMQAEMLTALEALSAEAKEDMERKLNEKDN
Ga0209938_10533862	3300026180	Pond Soil	MPKATTGKRLLNLPQAAEYSAKSYERGLEEGRRQMQAEMLTALEALSAEAKKDIERELNEKQN
Ga0209925_11261992	3300026197	Pond Soil	MPKATTGKRLLNLPQAAEYSAKSYERGLEEGRRQMQAEMLTALEALSAEAKEDIERKLNEKDN
Ga0209947_10324867	3300026251	Pond Soil	MPKANTGKRLLNLPQAAEYSAKSYERGLEEGRRQMQAEMLTALEALSAEAKEDMERKLNEKDN

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F099972

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences