Sample 3300007984

Basic Information
IMG/M Taxon OID	3300007984 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0114514 \| Gp0125922 \| Ga0102931
Sample Name	Salt pond soil microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG R1_C_D1_MG
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Basic Information

IMG/M Taxon OID

GOLD Reference
(Study | Sequencing Project | Analysis Project)

Sample Name

Salt pond soil microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG R1_C_D1_MG

Sequencing Status

Permanent Draft

Sequencing Center

DOE Joint Genome Institute (JGI)

Published?

Use Policy

Open

Dataset Contents
Total Genome Size	576898851
Sequencing Scaffolds	34
Novel Protein Genes	40
Associated Families	23

Dataset Contents

Total Genome Size

576898851

Sequencing Scaffolds

Novel Protein Genes

Associated Families

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → Viruses → Predicted Viral	1
Not Available	27
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium ADurb.Bin234	1
All Organisms → Viruses → Monodnaviria → Trapavirae → Saleviricota → Huolimaviricetes → Haloruvirales → Pleolipoviridae → Betapleolipovirus	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group → Rhizobium	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Ectothiorhodospiraceae → Spiribacter → Spiribacter salinus	1
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → unclassified Patescibacteria group → Patescibacteria group bacterium	1

Dataset Phylogeny

Taxonomy Groups

Number of Scaffolds

All Organisms → Viruses → Predicted Viral

Not Available

All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium ADurb.Bin234

All Organisms → Viruses → Monodnaviria → Trapavirae → Saleviricota → Huolimaviricetes → Haloruvirales → Pleolipoviridae → Betapleolipovirus

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group → Rhizobium

All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Ectothiorhodospiraceae → Spiribacter → Spiribacter salinus

All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → unclassified Patescibacteria group → Patescibacteria group bacterium

Ecosystem Assignment (GOLD)
Name	Salt Pond Water, Soil And Salt Crust Microbial Communities From South San Francisco Under Conditions Of Wetland Restoration.
Type	Environmental
Taxonomy	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Pond Soil → Salt Pond Water, Soil And Salt Crust Microbial Communities From South San Francisco Under Conditions Of Wetland Restoration.

Ecosystem Assignment (GOLD)

Name

Salt Pond Water, Soil And Salt Crust Microbial Communities From South San Francisco Under Conditions Of Wetland Restoration.

Type

Environmental

Taxonomy

Environmental → Terrestrial → Soil → Wetlands → Unclassified → Pond Soil → Salt Pond Water, Soil And Salt Crust Microbial Communities From South San Francisco Under Conditions Of Wetland Restoration.

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	terrestrial biome → wetland area → soil
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline)

Alternative Ecosystem Assignments

Environment Ontology (ENVO)

terrestrial biome → wetland area → soil

Earth Microbiome Project Ontology (EMPO)

Free-living → Non-saline → Soil (non-saline)

Location Information
Location	South San Francisco, USA
Coordinates	Lat. (^o)	37.4971	Long. (^o)	-122.133	Alt. (m)	N/A	Depth (m)	0
Location on Map

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Location Information

Location

South San Francisco, USA

Coordinates

Lat. (^o)

37.4971

Long. (^o)

-122.133

Alt. (m)

N/A

Depth (m)

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F005874	Metagenome	387	Y
F007787	Metagenome	345	N
F014681	Metagenome / Metatranscriptome	261	Y
F032166	Metagenome	180	Y
F034486	Metagenome / Metatranscriptome	174	Y
F051940	Metagenome	143	Y
F054750	Metagenome	139	Y
F056354	Metagenome	137	N
F061556	Metagenome	131	Y
F063375	Metagenome	129	N
F073153	Metagenome	120	N
F075754	Metagenome	118	N
F086685	Metagenome	110	N
F087432	Metagenome	110	Y
F089905	Metagenome	108	N
F097996	Metagenome	104	N
F098766	Metagenome	103	Y
F099972	Metagenome	103	Y
F100427	Metagenome	102	N
F100495	Metagenome	102	Y
F101498	Metagenome	102	N
F103337	Metagenome / Metatranscriptome	101	Y
F104555	Metagenome	100	N

Family

Scaffold	Taxonomy	Length	IMG/M Link
Ga0102931_1033639	All Organisms → Viruses → Predicted Viral	2125	Open in IMG/M
Ga0102931_1038603	Not Available	1953	Open in IMG/M
Ga0102931_1057687	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium ADurb.Bin234	1527	Open in IMG/M
Ga0102931_1066034	Not Available	1409	Open in IMG/M
Ga0102931_1124345	Not Available	967	Open in IMG/M
Ga0102931_1140023	Not Available	902	Open in IMG/M
Ga0102931_1151920	Not Available	860	Open in IMG/M
Ga0102931_1164384	Not Available	822	Open in IMG/M
Ga0102931_1165954	Not Available	817	Open in IMG/M
Ga0102931_1177569	All Organisms → Viruses → Monodnaviria → Trapavirae → Saleviricota → Huolimaviricetes → Haloruvirales → Pleolipoviridae → Betapleolipovirus	787	Open in IMG/M
Ga0102931_1182999	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	773	Open in IMG/M
Ga0102931_1193258	Not Available	749	Open in IMG/M
Ga0102931_1222941	Not Available	691	Open in IMG/M
Ga0102931_1232814	Not Available	675	Open in IMG/M
Ga0102931_1243805	Not Available	657	Open in IMG/M
Ga0102931_1246232	Not Available	654	Open in IMG/M
Ga0102931_1251286	Not Available	646	Open in IMG/M
Ga0102931_1256645	Not Available	639	Open in IMG/M
Ga0102931_1258984	Not Available	636	Open in IMG/M
Ga0102931_1271088	Not Available	620	Open in IMG/M
Ga0102931_1276237	Not Available	613	Open in IMG/M
Ga0102931_1302164	Not Available	584	Open in IMG/M
Ga0102931_1304504	Not Available	581	Open in IMG/M
Ga0102931_1318212	Not Available	567	Open in IMG/M
Ga0102931_1322444	Not Available	563	Open in IMG/M
Ga0102931_1335009	Not Available	552	Open in IMG/M
Ga0102931_1336012	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group → Rhizobium	551	Open in IMG/M
Ga0102931_1339555	Not Available	548	Open in IMG/M
Ga0102931_1348721	Not Available	540	Open in IMG/M
Ga0102931_1359642	Not Available	531	Open in IMG/M
Ga0102931_1366650	Not Available	525	Open in IMG/M
Ga0102931_1369609	Not Available	523	Open in IMG/M
Ga0102931_1390008	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Ectothiorhodospiraceae → Spiribacter → Spiribacter salinus	508	Open in IMG/M
Ga0102931_1402887	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → unclassified Patescibacteria group → Patescibacteria group bacterium	500	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0102931_1033639	Ga0102931_10336394	F097996	MAIIKDGMHPRYLGFQCDWPVFVKIPFSADGKNWKKREHFNWAERDLERKDVASLYAQGLIYHNTELAKENKVGDRLSEMNTEELKSLVTQINAIVKGRTTSSQEYNNKRCKQSKIEDKQRGLIRRFLNRNPWATEDFYRIRDHIIGD*
Ga0102931_1038603	Ga0102931_10386033	F014681	MKRRYGHNMNFPTNFLRSLKRDCKGMVDLGVVLMIGIAFVGLMVVAYIVWTIDDQLDATGSAANSLANITGGFDDAVNLLLIAVTITILAIAISALLMLRGRT*
Ga0102931_1057687	Ga0102931_10576872	F054750	MEEIEKLNEYVNQYYKCDRTNGEELLMLQQKISGLLYYFETIRSEQHDAFESKVFELVQEGQSVARAVNEAHVTYPLMYKLRRIMDAGYRIVDAIRTNISYLKSEMNNIKR*
Ga0102931_1066034	Ga0102931_10660342	F005874	MLSPEELYNRVEETVNLSVDDLFAFKRSEYNEEYNARKSDAAQPKDEPLDDVIRLLSTPPEAWKDEDDGFNEVQEAEELLDFQRRTQAQIASQGLGMNFLGDDQDMTMREAASIRWGIDPDDEREWL*
Ga0102931_1074471	Ga0102931_10744712	F100427	MTEVPLLVWIPFWALIATIGHELTHYVFWVPIATDIEWDVWGNELEIEHIATPWAMRWAIVASMAPLLVGTVVLMYWLSTQPAVTTHSAIMGIGLAIYTFAGGKADYGRLTDAVTARLA*
Ga0102931_1100534	Ga0102931_11005343	F104555	CRGYEGVTVMSSRLDEIMSDPLGGEHLAALPVTDDQTIRQAIRHSIATNGIHNAGEHWAAVLDTIGPVPKAHLDTIKVIFNQEVSACF*
Ga0102931_1124345	Ga0102931_11243451	F086685	MIDITTIPLVLWVLGCITFVILGHELTHYIAWLPVASSIEYHFEEQYIEAEYPDTPFARKWAVMAGISPVIVATGLLLALIATGWQPTATWHHITAS
Ga0102931_1140023	Ga0102931_11400231	F099972	MMPKANTGKRLLNLPQAAEYSAKSYERGFEEGRRQMLVQMLNALESLSEEAKQDLERKINENN*
Ga0102931_1151920	Ga0102931_11519203	F073153	MSEQDMPIRKEIERIDGNIEGILTRLGQQGESVARLDLLVEEMKEMNQQLEHIEIRLNTLEGRIE*
Ga0102931_1164384	Ga0102931_11643841	F075754	VERGDYLRDTEEDAEMSHREHGLVAEAIVKAVFPGFEWWDTESFDLFRGQTRYDIISRNINRGEPRQNYLHHLLPKKEARAKPSTNYYAVVRKHPDYWLIGHINSVRFWYLCDRTRPEWWKEQTYEGGHLTYEHFKQIKTGVGISPPPAIEVFGQG*
Ga0102931_1164384	Ga0102931_11643842	F086685	SMIELTSIPLVLWAVVCAAFVIVGHELTHYIAWLPVATSIEYHFEEQYIEAEYPDTPFARKWAAVAGISPIIVATGLVVALIAIGWDPAASWHHITASAAVVLYGISGGKSDFVALFSLVQRLRSPAAD*
Ga0102931_1165954	Ga0102931_11659542	F097996	TTAGMHPRYLGFQVDWPVFVKMPFSADGKHWKKSEHFNWAERGIEAKNAATLYAQGFIYHNTDLAKANKVGDRLGEMSKDDLYSLVVQLNNIVKKQTTTTKEFNNKKCKQSKIEDKQRGLIRRFLNHNPWITEEYYEIRDHILGD*
Ga0102931_1177569	Ga0102931_11775693	F098766	MSHPRCAICGYEAHGDDHVRVEVEGVPPEKPPETYYFHTRCFDRTQAWERDL*
Ga0102931_1182999	Ga0102931_11829992	F007787	AQDFTKKEAKAKGQELAKTILDNGNANPLEVMATLSRLAEVINTFSETLKKDLNIPENETTLNGVHFKTRQGYPIYDYKQDGMINHYETLLKQRKDLIKQASKTGKPAVDPNNGEEIEGVPIKGYTKDSIVITF*
Ga0102931_1193258	Ga0102931_11932581	F032166	IRLSETPASMWRDVDDGFNEVEEARELLDFQRRTQAQIKSQGLSENYLTEDRNMQKREAASIRWGIDPDDEREWL*
Ga0102931_1222941	Ga0102931_12229411	F005874	TNLTVEELQAFKGSDYNEIYNARKSDAAQRKDEPLDDVIRLLSTEPAEWRDVDDGFNEVDEAEELLNFQRRTQAQIASQGLGENYLTEEEDMTMREAASIRWGIDPDEQREWL*
Ga0102931_1232814	Ga0102931_12328141	F005874	MVEIPSVPPDDELSPQQLYDRVEQVTNLDADELRAFKQSDYNAAYLEVASDAAQPGDEPLDDAIRLLERPGYEYSAEDDGFNEVEEAKELLDFQRRTQAQIASQGLGENFLTDARDMQVREAASIRWGIDPDDDREWL*
Ga0102931_1243805	Ga0102931_12438051	F032166	ETPADEWRDLDDGFNEVEEAEELLDFQRRTQGQIEAQGLGENYLTDARDMTKREAASIRWAIDPDTEREWL*
Ga0102931_1246232	Ga0102931_12462322	F056354	LSVFIALSITAVVITGLAIRGDIPELLGAAVAAIMSIVAGINALDLFVITNSGNVKDIAPQTDIALILLVIFVINLIFIFDRAFSGGN*
Ga0102931_1251286	Ga0102931_12512861	F005874	MGYGIPDDPPDRDLTPQQLHDRIDEVTNLSADELRAFKGSEFNAAYNMAKSDAAQPGDEPLDDVIRLLETPASEYRDMDDGFNEIEEGRELLSFQRRTQAQIESQGLGENYLTDLE
Ga0102931_1256645	Ga0102931_12566452	F087432	MVIYEDGEYAPCTYKVTLKNNGVQETHYANFRTYWEDMVAKHDHLTDLQFEEIIFTAEQDIRLQEIAELEIPQGFQSGVREYVENGNFPEGYEHPLSNLKQKKEKE
Ga0102931_1258984	Ga0102931_12589842	F097996	MAINREGMHPRYLGFQVDWPVFVKIPFTADGKQWKKSEHFNWAERNIDTKDAASLYAQGFIYHNTELNKANKVGDRLSEMNAEDLKSLVTQLNVIVKDRTSSNQEFNNKKCKQSKIEDKQRGLIRRFLNHNPWITEDFYTIRDTILGD*
Ga0102931_1271088	Ga0102931_12710883	F073153	MSEQDMPIRDEIRRIDGNIEGILTRLGNQSETIARIDLLVEEMQEMQSELEHIEVRLNTLESRLE*
Ga0102931_1276237	Ga0102931_12762371	F005874	MAMIPNDPPDDELTPRQLYDRFEDAVNLDVDELRAFKASEYNEAYNSMKSEAAQPGDEPLDDVIRLSETPASMWRDVDDGFNEVEEARELLDFQRRTQAQIKSQGLGENYLTEDRNMQKREAASIRWGIDPDDEREWL
Ga0102931_1288211	Ga0102931_12882111	F104555	MTSRLDEIMSDPLGGEHLAALPVTDDQTIRQAIRHSIATNGIHNAGEHWAAVLDTVGPVPKAHLDTIKVIFNQEV
Ga0102931_1302164	Ga0102931_13021642	F032166	DVDDGFNEIAEARELLDFQRRTQAQIKSQGLGSNTIAEYDDMTFREAASIRWGIDPDDEREWL*
Ga0102931_1304504	Ga0102931_13045042	F099972	MMPRANTGKRLLNLPQAAEYSAKSYERGFEEGRRQMLVQMLNALESLSAEIKEDIERKINENN*
Ga0102931_1316608	Ga0102931_13166081	F100427	MTEVPLLVWIPLWALIATVGHELTHYIFWVPIATDIEWDVWGNELEIEHIATPWAMRWAIVASMAPLLVGTVVLMYWLSTQPAVTTHSAIMGIGLAIYTFAGGKADYGRLTDAVTARLA*
Ga0102931_1318212	Ga0102931_13182121	F097996	MAINREGMHPRYLGFQVDWPVFVKVPFTADGKQWKKSEHFNWAERNIDTKDAASLYAQGFVYHNTELNKANKVGDRLSEMNAEDLRTVVTQLNAIVKDRTSSNQEFNNKKCKQSKIEDKQRGLIRRFLNHNPWITEDFY
Ga0102931_1322444	Ga0102931_13224443	F061556	MTNTTNTYRLATKTPKGEIIQFGPRMSMAIAERKRKAMVALTSHPVYIVNTLAE*
Ga0102931_1335009	Ga0102931_13350091	F063375	MTAVDISTRQLALIETVGGHLQTVIAYGGVFMGGVIIGFESSDYPMMWPITQSYTGKAVTYPYTQLLEIGIGILAVCVMMIILLEWVVYLHER*
Ga0102931_1336012	Ga0102931_13360122	F101498	MEGLSMKSKAVDLFEDWFQSKGVRKNWFADQLGVDNASISRWLSGRVKPHRAVRKRIAELTDGAVPMDSWQ*
Ga0102931_1339555	Ga0102931_13395551	F086685	MIELTTIPLVVWVIGCITFVILGHELTHYIAWLPVATSIEYHFHDQYIEAEYPDTPFARKWAVVAGISPVIVATGLVLALIATGWDPIATWHHITASAAVVLYGVSGGKSDFQALLNLGRTRRSPAGDD*
Ga0102931_1348698	Ga0102931_13486982	F063375	GVFMGGVIIGFESSDYPMVWPITKSYTGKAVTYPYTQLLEIGIGILAVCVMMIILLEWVVYLHER*
Ga0102931_1348721	Ga0102931_13487212	F089905	MRTVREIERDIREAESAQAETEFSSTSWDSLNAEITGLHRELKRATFHWDRLKLCGMMGVDTHGR*
Ga0102931_1359642	Ga0102931_13596422	F034486	MSLAASEHAPVIIELIKDCMTNKPIVAKTEWETIVNAITLEVQGTMLRNMVDLLEKIRKEGLHEPK*
Ga0102931_1366650	Ga0102931_13666502	F051940	MIGAVVGILITIIIAVLVFYNVAGSIDTTGLDEGFTGTPVANATDDTLDQAGTFFSIAPIIGVVAVAVVILGYVNRIGG*
Ga0102931_1369609	Ga0102931_13696091	F056354	MILSVFIALSITAVVITGLAIRGDIPELLGAAVAAIMSIVAGINALDLFVITNSGNVKDIEPQTDIALILLVIFVINLIF
Ga0102931_1390008	Ga0102931_13900082	F100495	MPYVVLLHATFANKADADHIYNQAKSVATNASVARIGEPGERTSHCGVFDEQPDGALIKDRQWHIDRFGILRETDIVPDDVIPDWVQPTGVQDAYPLTDVFGNPAKVQHN
Ga0102931_1402887	Ga0102931_14028871	F103337	TERKKVGEMSNQVIVHKGRTNTLTVSMGMDVSGDTLTSEVRSAANQSAPLIATWNLVFATDGTDGELILTMDDAVTSSIEDDRGYMDIKRVTGGEPVPVFDRPLEVIFRGTVTS*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300007984: Salt pond soil microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG R1_C_D1_MG

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences