Scaffold ErSWdraf_F5BXKTZ02I0SXA

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold ErSWdraf_F5BXKTZ02I0SXA

Scaffold ErSWdraf_F5BXKTZ02I0SXA

Overview

Basic Information
Taxon OID	2035265000 Open in IMG/M
Scaffold ID	ErSWdraf_F5BXKTZ02I0SXA Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Swedish Lakes - surface of Lake Erken
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Royal Institute of Technology
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	502
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Swedish Lakes

Source Dataset Sampling Location
Location Name	Lake Erken, Sweden
Coordinates	Lat. (^o)	59.84	Long. (^o)	18.63	Alt. (m)		Depth (m)	0 to 2
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F066585	Metagenome / Metatranscriptome	126	Y

Sequences

Protein ID	Family	RBS	Sequence
ErSWdraft_13870570	F066585	GGA	MSNYIAVCTPARDQVHTNYCYCMVNLVAYHTLNTEDAI

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