NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold ACOD_F95O9CU02FK5Z3

Scaffold ACOD_F95O9CU02FK5Z3


Overview

Basic Information
Taxon OID2038011000 Open in IMG/M
Scaffold IDACOD_F95O9CU02FK5Z3 Open in IMG/M
Source Dataset NameFungus garden microbial communities from Atta colombica in Panama - from dump top
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing Center454 Life Sciences, DOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)522
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Arthropoda → Symbiotic Fungal Gardens And Galleries → Fungus Garden → Unclassified → Fungus Garden → Fungus Garden Microbial Communities From Leaf-Cutting Ants In Gamboa, Panama

Source Dataset Sampling Location
Location NameGamboa, Panama
CoordinatesLat. (o)9.1167Long. (o)-79.7Alt. (m)Depth (m).5
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006745Metagenome365Y

Sequences

Protein IDFamilyRBSSequence
ACODT_10433390F006745GGTGGMADGVAPHRRRPTSSAVLVYVIVLVALQLFLVTVAAEAFLSDDEGLAWATAAISVAMFGAAATFLRYLRP
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Biomedical Sciences Research Center "Alexander Fleming"
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