Basic Information | |
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Taxon OID | 2038011000 Open in IMG/M |
Scaffold ID | ACOD_F95O9CU02GV1XT Open in IMG/M |
Source Dataset Name | Fungus garden microbial communities from Atta colombica in Panama - from dump top |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | 454 Life Sciences, DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 506 |
Total Scaffold Genes | 3 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 1 (33.33%) |
Novel Protein Genes | 1 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (100.00%) |
Associated Families | 1 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria | (Source: UniRef50) |
Source Dataset Ecosystem |
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Host-Associated → Arthropoda → Symbiotic Fungal Gardens And Galleries → Fungus Garden → Unclassified → Fungus Garden → Fungus Garden Microbial Communities From Leaf-Cutting Ants In Gamboa, Panama |
Source Dataset Sampling Location | ||||||||
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Location Name | Gamboa, Panama | |||||||
Coordinates | Lat. (o) | 9.1167 | Long. (o) | -79.7 | Alt. (m) | Depth (m) | .5 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F002255 | Metagenome / Metatranscriptome | 578 | Y |
Protein ID | Family | RBS | Sequence |
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ACODT_13649140 | F002255 | AGGAGG | MKRLLLGLALAAAVAYALRDWFAAPQPHPSWEETDNDPEDMSLDLAQRAREAEGAQAAEESETPAT |
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