Scaffold ACOD_contig00546

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold ACOD_contig00546

Scaffold ACOD_contig00546

Overview

Basic Information
Taxon OID	2038011000 Open in IMG/M
Scaffold ID	ACOD_contig00546 Open in IMG/M
Source Dataset Name	Fungus garden microbial communities from Atta colombica in Panama - from dump top
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	454 Life Sciences, DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	93144
Total Scaffold Genes	82 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	64 (78.05%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Arthropoda → Symbiotic Fungal Gardens And Galleries → Fungus Garden → Unclassified → Fungus Garden → Fungus Garden Microbial Communities From Leaf-Cutting Ants In Gamboa, Panama

Source Dataset Sampling Location
Location Name	Gamboa, Panama
Coordinates	Lat. (^o)	9.1167	Long. (^o)	-79.7	Alt. (m)		Depth (m)	.5
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F071942	Metagenome / Metatranscriptome	121	Y

Sequences

Protein ID	Family	RBS	Sequence
ACODT_19273620	F071942	GAGG	MSKTSKPGEFRTPDLYYAAYLQTAGVGLLRTDREGSRVYFIFDTSLGNMEELKQAWINNTGKVAAQPYAFSIRSLKAICHMP

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