Scaffold bke_il_velvet_contig_37694

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold bke_il_velvet_contig_37694

Scaffold bke_il_velvet_contig_37694

Overview

Basic Information
Taxon OID	2065487000 Open in IMG/M
Scaffold ID	bke_il_velvet_contig_37694 Open in IMG/M
Source Dataset Name	Human fecal microbial communities from Baylor School of Medicine, Texas, USA, mock community - bke_il_velvet
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Baylor College of Medicine
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	11486
Total Scaffold Genes	31 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	13 (41.94%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Associated Families	3

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Communities From Baylor College Of Medicine, Texas, Usa, Mock Community

Source Dataset Sampling Location
Location Name	Baylor School of Medicine, Houston, Texas, USA
Coordinates	Lat. (^o)	29.7	Long. (^o)	-95.38	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F078006	Metagenome	117	N
F080673	Metagenome	115	N
F085718	Metagenome	111	N

Sequences

Protein ID	Family	RBS	Sequence
bke_il_velvet_00340140	F085718	AGGAGG	MVIEFDFEIYKNGDYDKVYLRNGKEARVLCDNGKGNSPMVVMIEDDKADDYIILRYNETGRRNINGQSGLDLMLSVKEREPELWVVVISYMDNKDKRQKMVLPNFFSRNIRGNIYLQGSSKSSVSYYVDKLEEDGCFDELCEKIRVKRDRIYNMEIISLSDDETAV
bke_il_velvet_00340160	F078006	N/A	MIRGQFPAPWHNLNVSSMEDNILKRAAAELKEAGCRVFAWQDDAYNRGWSKGDYIMLYYAFPDSPNIGYLSHGEYGMSVAYSRAYIPSRGSGSGCGIKEEATFDLATALDVMNGPLPRWCRSYGVYPKQYDNIDKWYNSDNHNKKLFKEI
bke_il_velvet_00340210	F080673	N/A	MDEIIKLQDEILSYLRNNITKDEAYYILTTDKDMIEVLISDKKDGSKRIKILDMEYTIEKDDMLLLFDTDGVIDECLLVASYIGVNMYFRRQDVNAILNNINREKVMKYPYIAIQLDNIQTIEKRRVVFEITGHRMDDNKERIDFMFIYFMARLCV

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