Sample 2065487000

Basic Information
IMG/M Taxon OID	2065487000 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0046037 \| Gp0051812 \| Ga0011102
Sample Name	Human fecal microbial communities from Baylor School of Medicine, Texas, USA, mock community - bke_il_velvet
Sequencing Status	Permanent Draft
Sequencing Center	Baylor College of Medicine
Published?	N
Use Policy	Open

Basic Information

IMG/M Taxon OID

2065487000 Open in IMG/M

GOLD Reference
(Study | Sequencing Project | Analysis Project)

Gs0046037 | Gp0051812 | Ga0011102

Sample Name

Human fecal microbial communities from Baylor School of Medicine, Texas, USA, mock community - bke_il_velvet

Sequencing Status

Permanent Draft

Sequencing Center

Baylor College of Medicine

Published?

Use Policy

Open

Dataset Contents
Total Genome Size	73365225
Sequencing Scaffolds	12
Novel Protein Genes	21
Associated Families	21

Dataset Contents

Total Genome Size

73365225

Sequencing Scaffolds

Novel Protein Genes

Associated Families

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	5
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium	4
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Rikenellaceae → Alistipes → Alistipes shahii	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Bacteroidaceae → Bacteroides → unclassified Bacteroides → Bacteroides sp.	1

Dataset Phylogeny

Taxonomy Groups

Number of Scaffolds

Not Available

All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium

All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Rikenellaceae → Alistipes → Alistipes shahii

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales

All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Bacteroidaceae → Bacteroides → unclassified Bacteroides → Bacteroides sp.

Ecosystem Assignment (GOLD)
Name	Human Fecal Microbial Communities From Baylor College Of Medicine, Texas, Usa, Mock Community
Type	Host-Associated
Taxonomy	Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Communities From Baylor College Of Medicine, Texas, Usa, Mock Community

Ecosystem Assignment (GOLD)

Name

Human Fecal Microbial Communities From Baylor College Of Medicine, Texas, Usa, Mock Community

Type

Host-Associated

Taxonomy

Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Communities From Baylor College Of Medicine, Texas, Usa, Mock Community

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	Unclassified
Earth Microbiome Project Ontology (EMPO)	Host-associated → Animal → Animal distal gut

Alternative Ecosystem Assignments

Environment Ontology (ENVO)

Unclassified

Earth Microbiome Project Ontology (EMPO)

Host-associated → Animal → Animal distal gut

Location Information
Location	Baylor School of Medicine, Houston, Texas, USA
Coordinates	Lat. (^o)	29.7	Long. (^o)	-95.38	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Location Information

Location

Baylor School of Medicine, Houston, Texas, USA

Coordinates

Lat. (^o)

29.7

Long. (^o)

-95.38

Alt. (m)

N/A

Depth (m)

N/A

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F042095	Metagenome	159	N
F050794	Metagenome	145	N
F051936	Metagenome	143	N
F057001	Metagenome	137	Y
F058555	Metagenome	135	N
F064725	Metagenome	128	N
F076064	Metagenome	118	N
F076653	Metagenome	118	N
F077313	Metagenome	117	N
F078005	Metagenome	117	N
F078006	Metagenome	117	N
F080673	Metagenome	115	N
F083451	Metagenome	113	N
F083452	Metagenome	113	N
F085718	Metagenome	111	N
F089591	Metagenome	109	N
F089592	Metagenome	109	N
F093883	Metagenome	106	N
F097493	Metagenome	104	Y
F098313	Metagenome	104	N
F102167	Metagenome	102	N

Family

Scaffold	Taxonomy	Length	IMG/M Link
bke_il_velvet_contig_11750	Not Available	3522	Open in IMG/M
bke_il_velvet_contig_15463	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium	27249	Open in IMG/M
bke_il_velvet_contig_21162	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium	13393	Open in IMG/M
bke_il_velvet_contig_22544	Not Available	12246	Open in IMG/M
bke_il_velvet_contig_26356	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium	3848	Open in IMG/M
bke_il_velvet_contig_26829	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Rikenellaceae → Alistipes → Alistipes shahii	1777	Open in IMG/M
bke_il_velvet_contig_37694	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium	11486	Open in IMG/M
bke_il_velvet_contig_4061	Not Available	30602	Open in IMG/M
bke_il_velvet_contig_63443	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	22689	Open in IMG/M
bke_il_velvet_contig_6772	Not Available	21272	Open in IMG/M
bke_il_velvet_contig_7585	Not Available	16805	Open in IMG/M
bke_il_velvet_contig_87119	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Bacteroidaceae → Bacteroides → unclassified Bacteroides → Bacteroides sp.	1206	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
bke_il_velvet_contig_11750	bke_il_velvet_00646900	F093883	MEEDKDIKKEIRDYLKEEADTHIRHWIAIKRESKRLYSDIEDRTKKIALKSSSLIKEEDFVVLHEMTHKIQMLNIEAVKVNSRLMFMIQLATSFGMDLDLDTTYASTAKGIIEDRTSGFVFYDDKERLRYADKELEDMFHDMSVTEVSKIGVVQSYELLMKQYNEFKDMKANATGKTKAD
bke_il_velvet_contig_15463	bke_il_velvet_00388350	F078005	MKKSEFVKELEKIIDMVKIEDDGFEYGGKVIFYKEDDDNYEITVKNIEMDLKVEANTMASMDDRTFDCLMSEVYKQKFTKTITMSEDEDDEDN
bke_il_velvet_contig_15463	bke_il_velvet_00388560	F083451	MNVNLINKINNFSNVDKNEREKQVLDLLMSRKDIRKLVEKSNECYSKMDFVGAMRYRQEIKDIVDRESKIMLTKSESLVSLMNNADNEYKFNMLVWLHSMMCMADVFNGILEDFKDGVRKANGNSKFVKFDNLDRLMTECKKEIDYLMKGTSKSLQISFAVRSDELREMIENMVGDNIREGYDIFKEEAKMTKETDRSKIEEFNKRLDHE
bke_il_velvet_contig_15463	bke_il_velvet_00388670	F076653	MTIRDKYFGWKDIFFDRFVHCCNEKSDQPQGSNIPLAKINFDNKTGYVEDGTINIAELLQYLWINNKVYGCEYAPIDISSALQTLIRLTENAKHMFEDQPGVYDMIPYRGFFLRDDFLSGKDYSLDLDKIVSGMGGWYGEDEDPCYSMFVSQDQIWNLNPILKVLADEGSILAKELGYDINSYVSDNGYTIYNPYLSWINHYYHYCPTFNEDKLKPWDRVEDRENKFKMTDKVKRGANNWYYSGGTISCVDSFLGKKYRKNLRTFIYRGIVFFLDRIWHTPLFEKMGVKMKYNAYYCYAATSGIWYNKGFKKRLAKRFNESLRGGGDLFGANLACMVCDHKDIDWEALRLWLDKYDEPNDKGMVNSPIQFMYLYLYYAFNK
bke_il_velvet_contig_21162	bke_il_velvet_00919510	F058555	MSGTKIALLQKMKSNFDKILTEKYIPRNIQTKKDELGCVKLPAGSLICPVDFKHVTNKEGKKVTAIKYSSKHEEYHGSGIRISDECKMAMIYLIIINVLKHVFLRKRMQDGNRDQIEINTNDFIDILSDGCAYFCYRHVLRDSHEDINYQLISLKAWAEGEIRIALSDIIKYKHKASKVPRIKDMFVKKGESIYTCIDKNLDSDSRRRMANKSRKLDRVRILSKIIFRARTRNVHHIYKVTKRKTVKFNVAYLLNELNKKLIGIGMREISQSTIYRYISMFLDMCKKSISDLYDEVKKNNGVVNTKDRKNVTIGCLRLLYKGKYMHILISTEYIRDVFLGEKSSEMSKAG
bke_il_velvet_contig_21162	bke_il_velvet_00919680	F102167	MDINQIKKYLPVGWDVVDLIDHGIIDLDIMNGKMMGEYAAMLMVKSDVNSVGYSVTTFSFHDKDMDKLRMLIGNAIMAVGLRNNPLTGDGNTAIK
bke_il_velvet_contig_21162	bke_il_velvet_00919710	F083452	MSGRVKIKIKDKKPKIDVFKVIENRFKNMNELRDLIDMDPRKGLVRIRDGAGFREVERGGCLHRNYLNLLEEELGAKLSIDLIDKYIKRNI
bke_il_velvet_contig_22544	bke_il_velvet_00370680	F064725	MTIKGLLAEIKADLHKYDDSGAIDTSSVYRWAEIALKRFGGVIAVMSEAVVKTSNKQAVLPSDFFDMLDAYRCEPLICEIPGGDKAKADLQHEIGWVERTERGFRWNSCTECCKEEFEKTITEKIYIGSHEVRFHYHHPVRLSIGRGLRRDCAADKYRDKYDWDNYDITISGNTMYIGFDGFIYIIYRATPKDDDGLPYIPETALGYLEDYVETYIKMKIFENAAVNGLIQGAGDAYKLYAQQEPGKFARAMKELKMSMITLNDYRELAEDNRRRMLSHERMWPNAFDKYIKLI
bke_il_velvet_contig_26356	bke_il_velvet_00803550	F057001	MPIQVPRARANLMTSKDLNKVQNEVKKASEKTLTGAVKAWCQLFKSGKEINEILKDNDIKVDKAIVPALVSLAKDKEVVIQLCKDILPRVNDTFCAYKEVEREYYDKQDQANNSKLPSDKVNDIAVLGDTHKRFGYCEPIAYNDTGSVPYYEVFNGSDKRIIKVAIPIKRYTYNLIAKCITYYLTHPKNDR
bke_il_velvet_contig_26829	bke_il_velvet_00052970	F076064	LKKTTPGRALENLFYLQYDLPPEASFHATTEEAKRPDELYMRKLLPELTRLKLQPRHVVANDEAYYAVMKGVMLFTPEAEKLMLTEDYFSARRQIRLCAPDLKRRNETRRHPMPVLKLY
bke_il_velvet_contig_37694	bke_il_velvet_00340140	F085718	MVIEFDFEIYKNGDYDKVYLRNGKEARVLCDNGKGNSPMVVMIEDDKADDYIILRYNETGRRNINGQSGLDLMLSVKEREPELWVVVISYMDNKDKRQKMVLPNFFSRNIRGNIYLQGSSKSSVSYYVDKLEEDGCFDELCEKIRVKRDRIYNMEIISLSDDETAV
bke_il_velvet_contig_37694	bke_il_velvet_00340160	F078006	MIRGQFPAPWHNLNVSSMEDNILKRAAAELKEAGCRVFAWQDDAYNRGWSKGDYIMLYYAFPDSPNIGYLSHGEYGMSVAYSRAYIPSRGSGSGCGIKEEATFDLATALDVMNGPLPRWCRSYGVYPKQYDNIDKWYNSDNHNKKLFKEI
bke_il_velvet_contig_37694	bke_il_velvet_00340210	F080673	MDEIIKLQDEILSYLRNNITKDEAYYILTTDKDMIEVLISDKKDGSKRIKILDMEYTIEKDDMLLLFDTDGVIDECLLVASYIGVNMYFRRQDVNAILNNINREKVMKYPYIAIQLDNIQTIEKRRVVFEITGHRMDDNKERIDFMFIYFMARLCV
bke_il_velvet_contig_4061	bke_il_velvet_00934080	F042095	MAKTLYKYEASSNKFVWFTTWDRALRNCYTDDYNYVPDPVVGNPYNTFVEFRSRKPGMANVDWGDGIKEQFPMTKVQGRDDYCIIFRSLAIQHRKNPNTTWWFRKEDGSQYVPVDNHAYADGRRDVQRAVSIDFTCDIYYANIEICKMTAFPIVDIPGLEFLVVSHTMYVNDGIPVDKLSRSNKLIYIELSNVGQRMTEMPEAITSKTEVYYLGMFNMLDLRDIESSGIRNIKNMKNLQTLELSSCYLDRYIKEFNDLPKLTSLNITQGPSDMWNYFDINTLPFFEVDKINPNITDFIFLNDWKNGERRTGWNDDNMSGRGLEHLTSFIAAHSNSLRMDKLPDYIYEMRSITWFGVNCSTHSQKRSDDFVNSFYDLVVGWDQITMASVAKDGERNQFYGLTVSMYSSTFPNENQRPSGTEQAPEGFVKGSSNGSPATPMEKIYVLKNNYAQKWTIKPA
bke_il_velvet_contig_4061	bke_il_velvet_00934150	F089591	MTIQEAYLRSLQKNEQNLANGGIKLDPGRFVLLFNEAQDRLVKYYLNRKDDETIRSIQNLLVYWMSLDNAGRIDDPESTSFNLPDDYLWFSNIKGVFSYKGCEATDFVMWEAKNENIHELLGDENNRPSYDYRETFYSIGNGKVVVYESGFRTEEVKMTYYRRPVRVDLSGYINAAGIQSTDVDPELPDYLVEEILDMVAKQFNLNENELYRYRMDKDNVASFK
bke_il_velvet_contig_4061	bke_il_velvet_00934160	F089592	MKDILKSKKVLAEVNGFNIMSDTLYEVVGKHDGSAPQAFQDANIAKAPFPENATHVCCPWDDFSKAYNTGFYPRSRCYNGLDKNEIDRLVKQRVDNIMKPFEEMSQMDLSQTNLEFWDDAKDKIFMGKVYNTANTVDLFYLYLAVFSGMLTPQEMDGDPVFMNSMFCFVEKDNMKDFVQQREINKMNISYKFISALKKGGDDRQAVIDLLLYIGIVTRPDFTEDEYYTGSLSNWMNEKKTNVDYLLDIWDRSLEGDFKEVLEFYRIVNVLQRNGRINMTPSGLQYNGQIIGPDVRTSAEFLATKKDFINIKANVLDEYEEIISMSNIDDKSKTKKVKDIKKKDDVEEGDKVKEE
bke_il_velvet_contig_63443	bke_il_velvet_00423480	F097493	MYKFYSKNGQAQFYEHGVEIDGTVYGIHVDRDILRIKRRIVNDKFAETDGDFDMDTEIAKIQHTYVTFEQPTAEQLSQIQSKTFDSMSDMKQYVQSVMNGDETMSQDEINAMLLLKIAEMEVAITNEQTTN
bke_il_velvet_contig_6772	bke_il_velvet_00865450	F050794	MLYTSNYFVKVRQKQLLDHTYALSRDQAFDYMTEFNKRLSDKVGIKCTMDILLPTDDDNANIIIEHNGIIKKLMNEADKLELDTDAIKVMMRDLLDELKDDIDLNILIFDVTQLLIKYNLFRLDAITEQEFKNSFVRMDSRNMEIKKLTLSDIKKVVEMIEDRYSYALYMTEEYG
bke_il_velvet_contig_6772	bke_il_velvet_00865480	F077313	MSKYIIKRKIPKYQEAGEVGSYMLGNMDGIQGLGIEPLVNTNQGLPASVNPLGIYSLDTPDQLRTKYANAFDQDNVFPASFKGSLQRIAENYQDNGITLNNITVNDVDKSKTGSGETDVFDFTTIPYYGADDIGSRFTQMGRGIGRMRSEGYGDLSTGAKTANTITTIASGISGIMGLARNVVSGIASEKGTRTNIRLAQEREARQRRQSQMQYKDGGGVYLGPNNRLDSGSLTGEYLYPLPKSMEDQANVEIEKGEYVTQPGEAPMEAMGQKHADGGTPVSLEQGTKVITDDTTIEPDFAKYIRDTYGIKATPKDTYATLMDRYKAKIGLKSAYDDQKKALEKLKKNDKIDDENTRRLNASVLSKAINDSNDTVNGLEGRFTDFANVIYKEQEDRKMKKDEDTYFAKGGEIDNIISRSMKEYGLTEEDIVEAKKELLKKVAGIRQKMEIGGTSLFGRKLTFRPIENKFNNDPNYFGYQRQGTDGSYGGINTDERLNYYKTFNPVAYDAYMGASEGARARALQDAIYGQTSSWMGLATAENPIIANAEALRDYTTFVSFGGEDSQGNYPEDKKAAYHDRMRDNKLGLFTTSRPMIGLDVVTEEQHKALNDAGITHFSQLFSDKNKDVVNKILGEDMLKMQALRSMKGMEGLDFILDPHKVAPGPMDIGDVEEPDVKLDMPELIDPNTLPKTNTNAGKSNSGNGGRNIVGGGLDFPEVFRMTPGAVTTEGLERHYAPTVDPVLRSADQYMVETNRAFQSQLDQMGNVPDSQRGALSSNLQAIMSSNIGRYINEVEQGNVAQRAWADNVNARTWADTYDKNIAQRQAYQQRILQGLAINDENWARYFDSVNDEIQQKWNTATTMNTLRSIFGDVKIGPNGQLIADPQGDILSYRRLYPAQEVTKGKKG
bke_il_velvet_contig_7585	bke_il_velvet_00269800	F098313	MREMEFDFVIYPLKLIITVGLDYKTLCDRFENMEPEHEGKWGDEDDMDKEASFANLVRDRDDDDKFAILWNFSSDDDLIMRNICHESFHIAMSVCQFCNMSLGFKVGEDEHAAYIAGFAGDCVSEFINSKNTD
bke_il_velvet_contig_87119	bke_il_velvet_01029930	F051936	GQVLFFLLAPRGKAFGFSGLSETAVMTPVIINFSLLLIIR

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

2065487000: Human fecal microbial communities from Baylor School of Medicine, Texas, USA, mock community - bke_il_velvet

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences