Scaffold LWFCAn_GLQU6AQ01DITAK

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold LWFCAn_GLQU6AQ01DITAK

Scaffold LWFCAn_GLQU6AQ01DITAK

Overview

Basic Information
Taxon OID	2100351007 Open in IMG/M
Scaffold ID	LWFCAn_GLQU6AQ01DITAK Open in IMG/M
Source Dataset Name	Sediment microbial communities from Lake Washington, Seattle, for Methane and Nitrogen Cycles, sample from flow sorted aerobic plus nitrate
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	512
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Sediment → Freshwater Sediment → Freshwater Sediment Microbial Communities From Lake Washington, Seattle, Usa, For Methane And Nitrogen Cycles

Source Dataset Sampling Location
Location Name	Lake Washington, Seattle
Coordinates	Lat. (^o)	47.676484	Long. (^o)	-122.228394	Alt. (m)		Depth (m)	62
Location on Map

Zoom:	Powered by OpenStreetMap^©

Associated Families

Family	Category	Number of Sequences	3D Structure?
F092927	Metagenome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
LWFCAn_02084190	F092927	N/A	TEKGQAQFPASWRKQAGLMHGGPCDVRVLDDGRQSLLITPRPQKRRGAVGLLAHLEGQSVAFPKVKRHTMPFK

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