NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold FWIRA_GRAM18401D72T8

Scaffold FWIRA_GRAM18401D72T8


Overview

Basic Information
Taxon OID2124908009 Open in IMG/M
Scaffold IDFWIRA_GRAM18401D72T8 Open in IMG/M
Source Dataset NameSoil microbial communities from sample at FACE Site Metagenome WIR_Amb2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)513
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil Microbial Communities From Face And Otc Sites In Usa

Source Dataset Sampling Location
Location NameWisconsin Rhinelander (WIR)
CoordinatesLat. (o)45.68Long. (o)-89.63Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F081787Metagenome / Metatranscriptome114Y

Sequences

Protein IDFamilyRBSSequence
FWIRA_01833700F081787GAGMAPDLLISFVDGSTMTVTIAQRSPPLHKGARIRQISEDEAMILFECEDESILDVTIVDPGNKNNQVEYLG
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