Scaffold STU__NODE_7413_len_7696_cov_18_301455

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold STU__NODE_7413_len_7696_cov_18_301455

Scaffold STU__NODE_7413_len_7696_cov_18_301455

Overview

Basic Information
Taxon OID	2149837016 Open in IMG/M
Scaffold ID	STU__NODE_7413_len_7696_cov_18_301455 Open in IMG/M
Source Dataset Name	Human fecal microbial communities from the University of Arizona (HMP) - Ef2
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Chinese National Human Genome Center, Beijing
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	7724
Total Scaffold Genes	6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	5 (83.33%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Communities From The University Of Arizona, For Hmp Training

Source Dataset Sampling Location
Location Name	Bording, Denmark
Coordinates	Lat. (^o)	56.13	Long. (^o)	9.24	Alt. (m)		Depth (m)
Location on Map

Zoom:	Powered by OpenStreetMap^©

Associated Families

Family	Category	Number of Sequences	3D Structure?
F066905	Metagenome	126	Y

Sequences

Protein ID	Family	RBS	Sequence
STU_0031.00000480	F066905	AGGAGG	MPEESRDCGCGRNNNCLSNLFGGCGCGDSSILFFIIIFLLLFCNCGCNR

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