Scaffold GIO7OMY02JZS9O

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold GIO7OMY02JZS9O

Scaffold GIO7OMY02JZS9O

Overview

Basic Information
Taxon OID	2170459010 Open in IMG/M
Scaffold ID	GIO7OMY02JZS9O Open in IMG/M
Source Dataset Name	Grass soil microbial communities from Rothamsted Park, UK - December 2009 direct MP BIO1O1 lysis 0-9cm (no DNA from 10 to 21cm!!!)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	454 Life Sciences
Sequencing Status	Finished

Scaffold Components
Scaffold Length (bps)	527
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grass Soil → Grass Soil Microbial Communities From Rothamsted Park Plot 3D, Harpenden, Uk

Source Dataset Sampling Location
Location Name	Rothamsted, Harpenden, UK
Coordinates	Lat. (^o)	51.804241	Long. (^o)	-0.372114	Alt. (m)		Depth (m)	0 to .09
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F048973	Metagenome / Metatranscriptome	147	Y

Sequences

Protein ID	Family	RBS	Sequence
F62_07342100	F048973	GGAG	MHGFVFDREVIGKLVLSLWKFVNEDHGVITRSDPTGDIRMTVDFSHVIPPTDLKI

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