NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold ICCgaii200_c0405621

Scaffold ICCgaii200_c0405621


Overview

Basic Information
Taxon OID2228664021 Open in IMG/M
Scaffold IDICCgaii200_c0405621 Open in IMG/M
Source Dataset NameSoil microbial communities from Great Prairies - Iowa, Continuous Corn soil
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)559
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Soil Microbial Communities From Great Prairies (Kansas, Wisconsin And Iowa)

Source Dataset Sampling Location
Location NameUSA: Maryland: Natonal Institute of Health
CoordinatesLat. (o)39.0042816Long. (o)-77.1012173Alt. (m)Depth (m).1016
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012276Metagenome / Metatranscriptome282Y
F057278Metagenome / Metatranscriptome136Y

Sequences

Protein IDFamilyRBSSequence
ICCgaii200_04056211F012276AGGAGMTFGKCVWDGCTRHAEKESTGACRNHHQKIREARCLGCQGPLRNRLEIERGRCPRCLASRAA
ICCgaii200_04056212F057278N/AMAPALHPAPGMSTEPESTQPTPTGPVVHQFTVLRGMAVALVIETCDWYSGLLQAALARVRLEGQN

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