NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold ICCgaii200_c1107866

Scaffold ICCgaii200_c1107866


Overview

Basic Information
Taxon OID2228664021 Open in IMG/M
Scaffold IDICCgaii200_c1107866 Open in IMG/M
Source Dataset NameSoil microbial communities from Great Prairies - Iowa, Continuous Corn soil
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)2005
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Soil Microbial Communities From Great Prairies (Kansas, Wisconsin And Iowa)

Source Dataset Sampling Location
Location NameUSA: Maryland: Natonal Institute of Health
CoordinatesLat. (o)39.0042816Long. (o)-77.1012173Alt. (m)Depth (m).1016
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F090591Metagenome108N
F097645Metagenome104N

Sequences

Protein IDFamilyRBSSequence
ICCgaii200_11078661F090591N/AMPAKHQPPVGTLAYLAECGRTVYIVCNRCNRFVVAKLDEIAQRVGWRANVLETGKRLRCKECNYVGAKITVERPQVGRSVCPRCLRPYN
ICCgaii200_11078662F097645GGAGGMFIEPRQLIADTIDQLETISAYFADEVDERIHAPDKLPVEALAAKEALQTIKILIPRLRTAQGNLSASSAQLQFRECLNCD

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