NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold none_p113572

Scaffold none_p113572


Overview

Basic Information
Taxon OID2236876011 Open in IMG/M
Scaffold IDnone_p113572 Open in IMG/M
Source Dataset NameMarine microbial communities from Columbia River, CM, sample from Newport Hydroline, GS310-3LG-Hyp-75m
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of South Carolina
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)506
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales → Thalassiosiraceae → Thalassiosira → Thalassiosira oceanica(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine Estuarine → Marine And Estuarine Microbial Communities From Columbia River Coastal Margin

Source Dataset Sampling Location
Location NameNewport Hydroline 10 km (NH10)
CoordinatesLat. (o)44.651Long. (o)-124.295Alt. (m)Depth (m)75
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F021962Metagenome / Metatranscriptome216Y

Sequences

Protein IDFamilyRBSSequence
none_1135721F021962N/ALPPQFTPRSKHYAIKTVWFREQIVTRGIVLVKIDTV*QLGDMFTKGLGKVPFEYLRKKIMGW
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