Scaffold HighMDraftT1_c119040

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold HighMDraftT1_c119040

Scaffold HighMDraftT1_c119040

Overview

Basic Information
Taxon OID	3300000079 Open in IMG/M
Scaffold ID	HighMDraftT1_c119040 Open in IMG/M
Source Dataset Name	Sheep rumen microbial communities from New Zealand - High methane
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Draft

Scaffold Components
Scaffold Length (bps)	666
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Mammals → Digestive System → Foregut → Rumen → Sheep Rumen → Cattle And Sheep Rumen Microbial Communities From New Zealand, For Comparative Studies

Source Dataset Sampling Location
Location Name	New Zealand
Coordinates	Lat. (^o)	-42.26	Long. (^o)	171.6	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F091029	Metagenome / Metatranscriptome	108	N

Sequences

Protein ID	Family	RBS	Sequence
HighMDraftT1_1190402	F091029	GGA	MSALKEKIILFNNENAKLLEKAMKLEDELKNLQRTKRIDKLFDTFELDKNGLISTKLIMELLTGNKKYDVDEKFDKEGLIKFIESVVEMHSEEEKTLLDSLESALQGNTVFKEDLENPI

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