Scaffold HighMDraftT1_c174202

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold HighMDraftT1_c174202

Scaffold HighMDraftT1_c174202

Overview

Basic Information
Taxon OID	3300000079 Open in IMG/M
Scaffold ID	HighMDraftT1_c174202 Open in IMG/M
Source Dataset Name	Sheep rumen microbial communities from New Zealand - High methane
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Draft

Scaffold Components
Scaffold Length (bps)	998
Total Scaffold Genes	1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Oscillatoriophycideae → Chroococcales → Aphanothecaceae → Crocosphaera → Crocosphaera subtropica	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Mammals → Digestive System → Foregut → Rumen → Sheep Rumen → Cattle And Sheep Rumen Microbial Communities From New Zealand, For Comparative Studies

Source Dataset Sampling Location
Location Name	New Zealand
Coordinates	Lat. (^o)	-42.26	Long. (^o)	171.6	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F026764	Metagenome / Metatranscriptome	196	Y

Sequences

Protein ID	Family	RBS	Sequence
HighMDraftT1_1742021	F026764	N/A	SKFLVYDELCKIKPHNARVMGLAYDPKPGYIYSCGSDRKFILSEINYLSNVTEIAESNAGYTNLQFDKANDRIFLTNEAGILSVFMTNSFPPSLVNVIQTHSTHCIRGLDIDYSKQYIFTGTNKGDISILDLGQPGKEKLIKEISYFGGNLEIRIIRYNAIDREIYTGDQKGKITVWSLKSGQSIYAWQAHQEAITQMKYFPNKRQLLSMAKDKKIIYWQLPENWVNDSIKKFQEENIREINNTRATERLQKAAQKKEGDDDSSSDDSLDGWDIRP*

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