Scaffold DelMOSum2010

Basic Information
Taxon OID	3300000101 Open in IMG/M
Scaffold ID	DelMOSum2010_c10004804 Open in IMG/M
Source Dataset Name	Marine microbial communities from Delaware Coast, sample from Delaware MO Early Summer May 2010
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Draft

Basic Information

Taxon OID

3300000101 Open in IMG/M

Scaffold ID

DelMOSum2010_c10004804 Open in IMG/M

Source Dataset Name

Marine microbial communities from Delaware Coast, sample from Delaware MO Early Summer May 2010

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Draft

Scaffold Components
Scaffold Length (bps)	9647
Total Scaffold Genes	16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	8 (50.00%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (50.00%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

9647

Total Scaffold Genes

16 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

8 (50.00%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (50.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine → Marine Microbial Communities From Delaware Coast

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine → Marine Microbial Communities From Delaware Coast

Source Dataset Sampling Location
Location Name	Microbial Observatory off the coast of Delaware, USA
Coordinates	Lat. (^o)	38.84917	Long. (^o)	-75.1076	Alt. (m)	Depth (m)	0
Location on Map

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Source Dataset Sampling Location

Location Name

Microbial Observatory off the coast of Delaware, USA

Coordinates

Lat. (^o)

38.84917

Long. (^o)

-75.1076

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005010	Metagenome	415	Y
F006866	Metagenome / Metatranscriptome	363	N
F014252	Metagenome	264	Y
F036928	Metagenome / Metatranscriptome	169	N
F037181	Metagenome	168	N
F065692	Metagenome	127	N

Sequences

Protein ID	Family	RBS	Sequence
DelMOSum2010_1000480413	F037181	N/A	MSVIAPDQLVGARSPIYLTANYSSLASSITDITLEIYVWAGSRSSRPSTADYTLFRDVFAGTDVSFDIAPMVREEIGAVYDTNQTRTSPTGEKNNNIVWVQVDYDINYYDKADPPSVANVTGSTDIFPASNGYHIFSEGTNFEFPSAYLNNTSTVYVEDNGYEMMSLFQGKYANEVIENVIYRIGGATTYSFDITGYYADVQPEDRILRIPIGELGLNNWLTTDGYTGASSDRPINQSEWVLELNSQGSVFDTITVIKECEPKYTINTIQYINRYGTWDFIHFYKASQDNFSVTSERFRKSIGTSSSSGFTYDTTDNIYQQFNTNGKVTTTLNTGWVTEDYREAIKDLMMSEKILLNGLPVNVVTNSVTLQKSINDRTINYTIEVEEAYDTRYV*
DelMOSum2010_1000480415	F036928	GGA	MYSQLGYLIKALKETNERDEDIRTAKGKYQYPRTFKEALGKWR*
DelMOSum2010_100048043	F065692	AGGAG	MIFKVIRSKAIQYLFDTIEDARECRERLMDMGYENISIVVEQEDVP*
DelMOSum2010_100048044	F014252	N/A	MNDQEKETKILFYLLAFTIAMFALSVLALVYVYVHPTISL*
DelMOSum2010_100048045	F005010	GAG	MKTELKMIKGYLRKTRHIREVQKYLDMLMIDNINLSIQASRFGWTPELQHQLTNSALLIRKYQRRLRLIKF*
DelMOSum2010_100048047	F006866	N/A	MEEQGKSANVLINRNNLNNIFELLVQIHMRGQLSRDEQAFVKNFIELPEAPTRENRQARRANTQTIKKLFREEAKKRKEEK*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold DelMOSum2010_c10004804

Overview

Ecosystem & Geography

Associated Families

Sequences