Scaffold IMNBL3_c10000003

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold IMNBL3_c10000003

Scaffold IMNBL3_c10000003

Overview

Basic Information
Taxon OID	3300000114 Open in IMG/M
Scaffold ID	IMNBL3_c10000003 Open in IMG/M
Source Dataset Name	Passalidae beetle gut microbial communities from Costa Rica -Larvae (3ML+3BL)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Draft

Scaffold Components
Scaffold Length (bps)	215358
Total Scaffold Genes	217 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	150 (69.12%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Arthropoda → Digestive System → Midgut → Unclassified → Passalidae Beetle Gut → Passalidae Beetle Gut Microbial Communities From Costa Rica

Source Dataset Sampling Location
Location Name	Quebrada Gonzales Sector, Braulio Carrillo National Park, Costa Rica
Coordinates	Lat. (^o)	10.207151	Long. (^o)	-84.007673	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F066905	Metagenome	126	Y

Sequences

Protein ID	Family	RBS	Sequence
IMNBL3_10000003202	F066905	AGGAGG	MQEDRNCGCSCNNGGILNGMFGCGGDTEILFFIIIFLLLFTNFGCGCGRG*

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