Scaffold IMNBL3_c10166996

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold IMNBL3_c10166996

Scaffold IMNBL3_c10166996

Overview

Basic Information
Taxon OID	3300000114 Open in IMG/M
Scaffold ID	IMNBL3_c10166996 Open in IMG/M
Source Dataset Name	Passalidae beetle gut microbial communities from Costa Rica -Larvae (3ML+3BL)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Draft

Scaffold Components
Scaffold Length (bps)	793
Total Scaffold Genes	1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter → Edaphobacter lichenicola	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Arthropoda → Digestive System → Midgut → Unclassified → Passalidae Beetle Gut → Passalidae Beetle Gut Microbial Communities From Costa Rica

Source Dataset Sampling Location
Location Name	Quebrada Gonzales Sector, Braulio Carrillo National Park, Costa Rica
Coordinates	Lat. (^o)	10.207151	Long. (^o)	-84.007673	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F001800	Metagenome / Metatranscriptome	632	Y

Sequences

Protein ID	Family	RBS	Sequence
IMNBL3_101669961	F001800	AGGAG	MKSIFRKMAALLSMLLAAALLTAPAVAQSGANHANNWRDEDEQLAQIAELEQLHATFHAAVSVHDPVNGDSPTVITQRIRDALSIWAKDAQLTIVNTTATAGNYIGNGDPDDPANCPPPSGDTSATGQQGTLCTFFKYVSGGLQAANKFVSLSPAFKTKFVPVKDDDGQWKSSVYFECHYFDVSLNPATGQPFWTAKSHVSLDGEAKKIDGRWLLTHA

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