NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold TB18AUG2009E_c029435

Scaffold TB18AUG2009E_c029435


Overview

Basic Information
Taxon OID3300000203 Open in IMG/M
Scaffold IDTB18AUG2009E_c029435 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Trout Bog Lake, WI - Practice 18AUG2009 epilimnion
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)573
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameTrout Bog, Vilas County, Wisconsin, USA
CoordinatesLat. (o)46.0412Long. (o)-89.6864Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F080791Metagenome114Y
F085373Metagenome / Metatranscriptome111Y

Sequences

Protein IDFamilyRBSSequence
TB18AUG2009E_0294351F085373N/AGQLSRSACVIFIQSERETRLAIGGATSGWKRVDFTVVLQLFHHSVQNNAEDAMTDFDTLVDNIKNTLRASHNFGDDTQVNVWQGAEPAIDCLYGEPVTSDNGATETWAEIRFDVTQMIQA
TB18AUG2009E_0294352F080791AGGAGMATYIYNGDGEKEFPTLGLTVKNGDTFDSADEIVNADVTLASAPKKTTPTPVAATTTTQGA*

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