Scaffold Cc92DRAFT_1025399

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Cc92DRAFT_1025399

Scaffold Cc92DRAFT_1025399

Overview

Basic Information
Taxon OID	3300000303 Open in IMG/M
Scaffold ID	Cc92DRAFT_1025399 Open in IMG/M
Source Dataset Name	CECUM_9-2
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University College Cork
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	718
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Birds → Digestive System → Ceca → Unclassified → Chicken Cecum → Chicken Cecum Microbial Communities From Ireland

Source Dataset Sampling Location
Location Name	Ireland: Cork
Coordinates	Lat. (^o)	51.897783	Long. (^o)	-8.470613	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F011632	Metagenome	288	Y

Sequences

Protein ID	Family	RBS	Sequence
Cc92DRAFT_10253993	F011632	AGG	VLI*KGGQAREWAAQRGGAVTDPGGGQRAFGCCAEGHGLARTIGEGRMVGLDDPVGLFQP

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