Scaffold thermBogB4DRAFT_100140

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold thermBogB4DRAFT_100140

Scaffold thermBogB4DRAFT_100140

Overview

Basic Information
Taxon OID	3300000334 Open in IMG/M
Scaffold ID	thermBogB4DRAFT_100140 Open in IMG/M
Source Dataset Name	Permafrost microbial communities from permafrost in Bonanza Creek, Alaska - Thermokarst Bog cDNA B4 Metatranscriptome
Source Dataset Category	Metatranscriptome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Draft

Scaffold Components
Scaffold Length (bps)	781
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Permafrost → Soil → Soil Microbial Communities From Permafrost In Bonanza Creek, Alaska

Source Dataset Sampling Location
Location Name	Bonanza creek, Alaska, USA
Coordinates	Lat. (^o)	64.7	Long. (^o)	-148.3	Alt. (m)		Depth (m)	.3 to .7
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F007695	Metagenome / Metatranscriptome	346	Y

Sequences

Protein ID	Family	RBS	Sequence
thermBogB4DRAFT_1001402	F007695	N/A	VSEKQPESEEADPWHRVNALPKAAADPVLNGQEAKENRRRVLTWFASWWRNHQXKRAEKPHSKSXGRKALDGPATRPKTPLAVENGVGKPAAPVRVRA*

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