NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300000334

3300000334: Permafrost microbial communities from permafrost in Bonanza Creek, Alaska - Thermokarst Bog cDNA B4 Metatranscriptome



Overview

Basic Information
IMG/M Taxon OID3300000334 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0063124 | Gp0053547 | Ga0026493
Sample NamePermafrost microbial communities from permafrost in Bonanza Creek, Alaska - Thermokarst Bog cDNA B4 Metatranscriptome
Sequencing StatusDraft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size11200640
Sequencing Scaffolds8
Novel Protein Genes8
Associated Families8

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
Not Available8

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameSoil Microbial Communities From Permafrost In Bonanza Creek, Alaska
TypeEnvironmental
TaxonomyEnvironmental → Terrestrial → Soil → Unclassified → Permafrost → Soil → Soil Microbial Communities From Permafrost In Bonanza Creek, Alaska

Alternative Ecosystem Assignments
Environment Ontology (ENVO)terrestrial biome → thermokarst → permafrost
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Soil (non-saline)

Location Information
LocationBonanza creek, Alaska, USA
CoordinatesLat. (o)64.7Long. (o)-148.3Alt. (m)N/ADepth (m).3 to .7
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000734Metagenome / Metatranscriptome915Y
F004925Metagenome / Metatranscriptome418Y
F007695Metagenome / Metatranscriptome346Y
F010404Metagenome / Metatranscriptome304Y
F027406Metagenome / Metatranscriptome194Y
F051759Metagenome / Metatranscriptome143Y
F063716Metagenome / Metatranscriptome129Y
F105212Metagenome / Metatranscriptome100Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
thermBogB4DRAFT_100089Not Available1244Open in IMG/M
thermBogB4DRAFT_100140Not Available781Open in IMG/M
thermBogB4DRAFT_100156Not Available704Open in IMG/M
thermBogB4DRAFT_100219Not Available537Open in IMG/M
thermBogB4DRAFT_100226Not Available581Open in IMG/M
thermBogB4DRAFT_101024Not Available596Open in IMG/M
thermBogB4DRAFT_101473Not Available590Open in IMG/M
thermBogB4DRAFT_107378Not Available551Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
thermBogB4DRAFT_100089thermBogB4DRAFT_1000891F063716VKRRDPWHGANAPAKPVADLVLMVEMRQKITGVS*
thermBogB4DRAFT_100140thermBogB4DRAFT_1001402F007695VSEKQPESEEADPWHRVNALPKAAADPVLNGQEAKENRRRVLTWFASWWRNHQXKRAEKPHSKSXGRKALDGPATRPKTPLAVENGVGKPAAPVRVRA*
thermBogB4DRAFT_100156thermBogB4DRAFT_1001561F105212KNGGSGQKILIDLEDKSNGSQDLHHGXVGVQDHKEQSDVIRATKKC*
thermBogB4DRAFT_100219thermBogB4DRAFT_1002191F051759VGEGKAVTSDRPRAGEKKGCDAPGSIDPVAGENGHWGAERRSVQRSRLRCSVPGMPVXGKAANRITWNLX
thermBogB4DRAFT_100226thermBogB4DRAFT_1002261F027406GSK*PDFQPSPLPTCTALNIATESAGRFASWLPDRRFPNGWIDALKHAAALFHLGPVARNGLSLARNGXRFHEXHSGVKGPGLLLRSLAYRFLRPFSLDLRYRTRFAPVPAASSIHTRCAACDPRA*LRLPLPLPFRILRSLRIKAFRGICXPXTRLPIRPXSVRSPQPFLFLXSAMDHRSRSATFRRLAVPI
thermBogB4DRAFT_101024thermBogB4DRAFT_1010241F000734MARPVKTFREVGDIKNDTADLWTKGDLRVKRRDPWHRANVLPKAMADPALSG*
thermBogB4DRAFT_101473thermBogB4DRAFT_1014731F004925SRIIPGDWGKVESGWLAWPLSSPDRKVRGSGGRIHQFLWRRSRAVSNAKEELGGEER*
thermBogB4DRAFT_107378thermBogB4DRAFT_1073781F010404LQQISAAGSTLLAYIFDAALEFQLARSASRSRPRLAFFRLTGLDHCESPVANFLS*
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