NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Metagenome / Metatranscriptome Family F105212

Metagenome / Metatranscriptome Family F105212

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
Select file to download:
   Download


Overview

Basic Information
Family ID F105212
Family Type Metagenome / Metatranscriptome
Number of Sequences 100
Average Sequence Length 50 residues
Representative Sequence HKGSPKNGGSGQKFLIELEAKSNGSQDLHHGWVGVQDHKEQSDVIRATKKC
Number of Associated Samples 65
Number of Associated Scaffolds 100

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 0.00 %
% of genes near scaffold ends (potentially truncated) 100.00 %
% of genes from short scaffolds (< 2000 bps) 99.00 %
Associated GOLD sequencing projects 61
AlphaFold2 3D model prediction Yes
3D model pTM-score0.27

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
Powered by Skylign

Most Common Taxonomy
Group Unclassified (99.000 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Aquatic → Freshwater → Sediment → Unclassified → Wetland
(24.000 % of family members)
Environment Ontology (ENVO) Unclassified
(55.000 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Water (non-saline)
(60.000 % of family members)



 ⦗Top⦘

Multiple Sequence Alignments

Select alignment to view:      


 ⦗Top⦘

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 46.84%    β-sheet: 0.00%    Coil/Unstructured: 53.16%
Feature Viewer
Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.27
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


 ⦗Top⦘

Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 100 Family Scaffolds
PF01610DDE_Tnp_ISL3 1.00

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 100 Family Scaffolds
COG3464TransposaseMobilome: prophages, transposons [X] 1.00


 ⦗Top⦘

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
UnclassifiedrootN/A99.00 %
All OrganismsrootAll Organisms1.00 %

Visualization
Powered by ApexCharts

Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300000334|thermBogB4DRAFT_100156Not Available704Open in IMG/M
3300001448|JGI20219J14954_1003713Not Available854Open in IMG/M
3300001448|JGI20219J14954_1003786Not Available848Open in IMG/M
3300001448|JGI20219J14954_1009854Not Available582Open in IMG/M
3300001801|JGI20217J20340_10064Not Available625Open in IMG/M
3300001804|JGI20219J20330_100021Not Available583Open in IMG/M
3300001804|JGI20219J20330_103740Not Available853Open in IMG/M
3300001806|JGI20216J20342_1000388Not Available827Open in IMG/M
3300001806|JGI20216J20342_1000856Not Available834Open in IMG/M
3300001808|JGI20218J20341_1001115Not Available826Open in IMG/M
3300001808|JGI20218J20341_1002162Not Available682Open in IMG/M
3300001809|JGI20220J20339_1001635Not Available860Open in IMG/M
3300001809|JGI20220J20339_1002276Not Available650Open in IMG/M
3300001809|JGI20220J20339_1002943Not Available848Open in IMG/M
3300001809|JGI20220J20339_1002994Not Available830Open in IMG/M
3300002860|Ga0004694J43177_10028Not Available684Open in IMG/M
3300002860|Ga0004694J43177_10031Not Available605Open in IMG/M
3300002862|Ga0004695J43176_100019Not Available647Open in IMG/M
3300002862|Ga0004695J43176_100036Not Available650Open in IMG/M
3300002862|Ga0004695J43176_104076Not Available591Open in IMG/M
3300003696|Ga0003071J53072_102356Not Available850Open in IMG/M
3300003938|Ga0063230_11761836Not Available556Open in IMG/M
3300004797|Ga0007764_11613648Not Available729Open in IMG/M
3300005417|Ga0068884_1525072Not Available820Open in IMG/M
3300006423|Ga0075039_1491109Not Available816Open in IMG/M
3300006426|Ga0075037_1723748Not Available569Open in IMG/M
3300006426|Ga0075037_1856787Not Available752Open in IMG/M
3300007159|Ga0075020_161269Not Available841Open in IMG/M
3300007219|Ga0075025_1006972Not Available553Open in IMG/M
3300007321|Ga0102692_1026000Not Available570Open in IMG/M
3300007327|Ga0075016_1005707Not Available806Open in IMG/M
3300007327|Ga0075016_1083028Not Available822Open in IMG/M
3300007526|Ga0075022_1008115Not Available824Open in IMG/M
3300007526|Ga0075022_1683186Not Available521Open in IMG/M
3300009175|Ga0073936_10084280All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes2685Open in IMG/M
3300009579|Ga0115599_1005022Not Available851Open in IMG/M
3300009579|Ga0115599_1075622Not Available551Open in IMG/M
3300009579|Ga0115599_1136980Not Available744Open in IMG/M
3300009580|Ga0115596_1012921Not Available689Open in IMG/M
3300009580|Ga0115596_1120913Not Available705Open in IMG/M
3300009581|Ga0115600_1004244Not Available764Open in IMG/M
3300009581|Ga0115600_1050410Not Available536Open in IMG/M
3300009581|Ga0115600_1113064Not Available526Open in IMG/M
3300009582|Ga0115601_1076389Not Available824Open in IMG/M
3300009582|Ga0115601_1185121Not Available556Open in IMG/M
3300009583|Ga0115598_1026258Not Available547Open in IMG/M
3300009583|Ga0115598_1110386Not Available815Open in IMG/M
3300009584|Ga0115597_1201861Not Available554Open in IMG/M
3300009586|Ga0115591_1029654Not Available825Open in IMG/M
3300009586|Ga0115591_1114199Not Available529Open in IMG/M
3300009586|Ga0115591_1213656Not Available613Open in IMG/M
3300009755|Ga0115592_1130015Not Available754Open in IMG/M
3300010131|Ga0115594_1081497Not Available846Open in IMG/M
3300010131|Ga0115594_1156453Not Available845Open in IMG/M
3300010138|Ga0115595_1148688Not Available546Open in IMG/M
3300010144|Ga0115593_1120394Not Available518Open in IMG/M
3300011282|Ga0138293_101451Not Available688Open in IMG/M
3300011282|Ga0138293_103620Not Available764Open in IMG/M
3300011340|Ga0151652_10145439Not Available857Open in IMG/M
3300012411|Ga0153880_1319332Not Available636Open in IMG/M
3300012411|Ga0153880_1388436Not Available853Open in IMG/M
3300012696|Ga0157579_1078193Not Available804Open in IMG/M
3300012761|Ga0138288_1035060Not Available829Open in IMG/M
3300012774|Ga0138283_1062632Not Available826Open in IMG/M
3300016678|Ga0180045_115891Not Available844Open in IMG/M
3300019213|Ga0179950_1074979Not Available830Open in IMG/M
3300019225|Ga0179949_1208845Not Available769Open in IMG/M
3300019246|Ga0172287_1365396Not Available837Open in IMG/M
3300019252|Ga0172286_1250137Not Available611Open in IMG/M
3300019252|Ga0172286_1266793Not Available685Open in IMG/M
3300021269|Ga0210356_129775Not Available550Open in IMG/M
3300021269|Ga0210356_142325Not Available725Open in IMG/M
3300021333|Ga0210324_1297908Not Available708Open in IMG/M
3300021856|Ga0213850_1191166Not Available837Open in IMG/M
3300021860|Ga0213851_1404680Not Available778Open in IMG/M
3300021861|Ga0213853_10747587Not Available751Open in IMG/M
3300021861|Ga0213853_10747811Not Available753Open in IMG/M
3300021938|Ga0213847_1087849Not Available630Open in IMG/M
3300021938|Ga0213847_1145298Not Available743Open in IMG/M
3300022161|Ga0213931_1016154Not Available842Open in IMG/M
3300022161|Ga0213931_1016806Not Available826Open in IMG/M
3300022166|Ga0213932_1026873Not Available838Open in IMG/M
3300022171|Ga0213857_1012025Not Available851Open in IMG/M
3300022171|Ga0213857_1048982Not Available536Open in IMG/M
3300022185|Ga0079039_1277306Not Available809Open in IMG/M
3300023697|Ga0228706_1022689Not Available768Open in IMG/M
3300023708|Ga0228709_1053336Not Available825Open in IMG/M
3300025316|Ga0209697_10247669Not Available968Open in IMG/M
3300025595|Ga0208248_1090711Not Available682Open in IMG/M
3300028619|Ga0257136_1037620Not Available888Open in IMG/M
3300028621|Ga0257142_1038401Not Available878Open in IMG/M
3300028621|Ga0257142_1040153Not Available856Open in IMG/M
3300028623|Ga0257141_1039540Not Available897Open in IMG/M
3300028623|Ga0257141_1043117Not Available854Open in IMG/M
3300029674|Ga0265604_112692Not Available875Open in IMG/M
3300029685|Ga0265603_1038843Not Available572Open in IMG/M
3300029691|Ga0265598_1028989Not Available884Open in IMG/M
3300029691|Ga0265598_1033671Not Available807Open in IMG/M
3300030000|Ga0311337_11855803Not Available529Open in IMG/M
3300034652|Ga0316598_089697Not Available850Open in IMG/M



 ⦗Top⦘

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
WetlandEnvironmental → Aquatic → Freshwater → Sediment → Unclassified → Wetland24.00%
WatershedsEnvironmental → Aquatic → Freshwater → Sediment → Unclassified → Watersheds16.00%
WetlandEnvironmental → Aquatic → Freshwater → Wetlands → Sediment → Wetland16.00%
MarineEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Marine9.00%
FreshwaterEnvironmental → Aquatic → Freshwater → Creek → Unclassified → Freshwater5.00%
Arctic Peat SoilEnvironmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil5.00%
Freshwater LakeEnvironmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake3.00%
EstuarineEnvironmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine3.00%
Permafrost SoilEnvironmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost Soil3.00%
Freshwater SedimentEnvironmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment2.00%
FreshwaterEnvironmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater2.00%
Freshwater LakeEnvironmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake2.00%
Freshwater Lake HypolimnionEnvironmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake Hypolimnion2.00%
Anaerobic Digestor SludgeEngineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge2.00%
FreshwaterEnvironmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater1.00%
Freshwater WetlandsEnvironmental → Aquatic → Freshwater → Wetlands → Unclassified → Freshwater Wetlands1.00%
GroundwaterEnvironmental → Aquatic → Freshwater → Groundwater → Contaminated → Groundwater1.00%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Permafrost → Soil1.00%
Untreated Peat SoilEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Untreated Peat Soil1.00%
FenEnvironmental → Terrestrial → Peat → Unclassified → Unclassified → Fen1.00%

Visualization
Powered by ApexCharts



Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
3300000334Permafrost microbial communities from permafrost in Bonanza Creek, Alaska - Thermokarst Bog cDNA B4 MetatranscriptomeEnvironmentalOpen in IMG/M
3300001448Wetland microbial communities from Twitchell Island in the Sacramento Delta, sample from surface sediment Aug2011 Site A1 Bulk MetatranscriptomeEnvironmentalOpen in IMG/M
3300001801Wetland microbial communities from Twitchell Island in the Sacramento Delta, sample from surface sediment Feb2011 Site B1 Bulk Metatranscriptome (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300001804Wetland microbial communities from Twitchell Island in the Sacramento Delta, sample from surface sediment Aug2011 Site A1 Bulk Metatranscriptome (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300001806Wetland microbial communities from Twitchell Island in the Sacramento Delta, sample from surface sediment Feb2011 Site A1 Bulk Metatranscriptome (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300001808Wetland microbial communities from Twitchell Island in the Sacramento Delta, sample from surface sediment Feb2011 Site L1 Bulk Metatranscriptome (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300001809Wetland microbial communities from Twitchell Island in the Sacramento Delta, sample from surface sediment Aug2011 Site B2 Bulk Metatranscriptome (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300002860Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA - Graham LP Incubations RNA 1 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300002862Arctic peat soil from Barrow, Alaska - Barrow Graham LP Incubations RNA 2 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300003696Groundwater microbial communities from coal-tar-waste-contaminated well in S. Glens Falls, New York, USA - aqueous naphthalene treatment rep 2 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300003938Wetland microbial communities from Twitchell Island in the Sacramento Delta, California, USA - surface sediment Aug2011 Site C1 Bulk Metatranscriptome (Metagenome Metatranscriptome) (version 2)EnvironmentalOpen in IMG/M
3300004797Metatranscriptome of freshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MLB.DN (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300005417Freshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel6S_1000h metaT (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300006423Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate RNA 2013_056 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300006426Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate RNA 2013_054 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300007159Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaT_CSR_2013 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300007219Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaT_SC_2013 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300007321Freshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel6S_1000h metaT (Metagenome Metatranscriptome) (version 2)EnvironmentalOpen in IMG/M
3300007327Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaT_ABR_2013 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300007526Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaT_CSR_2012 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300009175Freshwater lake bacterial and archeal communities from Alinen Mustajarvi, Finland, to study Microbial Dark Matter (Phase II) - Alinen Mustajarvi 5m metaGEnvironmentalOpen in IMG/M
3300009579Wetland microbial communities from Old Woman Creek Reserve in Ohio, USA - Plant_9_15_C (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300009580Wetland microbial communities from Old Woman Creek Reserve in Ohio, USA - Mud_11_14_C (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300009581Wetland microbial communities from Old Woman Creek Reserve in Ohio, USA - Mud_9_15_A (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300009582Wetland microbial communities from Old Woman Creek Reserve in Ohio, USA - Mud_9_15_B (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300009583Wetland microbial communities from Old Woman Creek Reserve in Ohio, USA - Plant_9_15_B (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300009584Wetland microbial communities from Old Woman Creek Reserve in Ohio, USA - Plant_9_15_A (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300009586Wetland microbial communities from Old Woman Creek Reserve in Ohio, USA - Plant_11_14_A (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300009755Wetland microbial communities from Old Woman Creek Reserve in Ohio, USA - Plant_11_14_B (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300010131Wetland microbial communities from Old Woman Creek Reserve in Ohio, USA - Mud_11_14_A (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300010138Wetland microbial communities from Old Woman Creek Reserve in Ohio, USA - Mud_11_14_B (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300010144Wetland microbial communities from Old Woman Creek Reserve in Ohio, USA - Plant_11_14_C (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300011282Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaT_SC_2012 (Metagenome Metatranscriptome) (version 2)EnvironmentalOpen in IMG/M
3300011340Combined Assembly of Wetland MetatranscriptomesEnvironmentalOpen in IMG/M
3300012411Freshwater microbial communities from Lake Alinen Mustaj?rvi, Finland - AM7a metatranscriptome (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300012696Dystrophic lake water microbial communities from Trout Bog Lake, Wisconsin, USA - GEODES083 metaT (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300012761Freshwater microbial communities from Lake Simoncouche, Canada - S_130826_M_mt (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300012774Freshwater microbial communities from Lake Simoncouche, Canada - S_130109_E_mt (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300016678Dystrophic lake water microbial communities from Trout Bog Lake, Wisconsin, USA - GEODES102 metaT (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300019213Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from Japan ? AD_JPNHW2_MetaT (Metagenome Metatranscriptome)EngineeredOpen in IMG/M
3300019225Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from Japan ? AD_JPNHW1_MetaT (Metagenome Metatranscriptome)EngineeredOpen in IMG/M
3300019246Wetland microbial communities from Old Woman Creek Reserve in Ohio, USA - Plant_deep_8_15_core_2 metaT (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300019252Wetland microbial communities from Old Woman Creek Reserve in Ohio, USA - Plant_deep_8_15_core_1 metaT (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300021269Metatranscriptome of estuarine sediment microbial communities from the Columbia River estuary, Oregon, United States ? S.499 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300021333Metatranscriptome of estuarine sediment microbial communities from the Columbia River estuary, Oregon, United States ? S.191 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300021856Metatranscriptome of freshwater microbial communities from post-fracked creek in Pennsylvania, United States - LL:C (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300021860Metatranscriptome of freshwater sediment microbial communities from post-fracked creek in Pennsylvania, United States - ABR_2014 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300021861Metatranscriptome of freshwater sediment microbial communities from post-fracked creek in Pennsylvania, United States - ABR_2016 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300021938Metatranscriptome of freshwater microbial communities from pre-fracked creek in Pennsylvania, United States - EE:C (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300022161Metatranscriptome of freshwater microbial communities from McNutts Creek, Athens, Georgia, United States - 3-17 MT (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300022166Metatranscriptome of freshwater microbial communities from McNutts Creek, Athens, Georgia, United States - 11-17 MT (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300022171Metatranscriptome of freshwater sediment microbial communities from pre-fracked creek in Pennsylvania, United States - G-2016_45 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300022185Freshwater wetland microbial communities from Ohio, USA, analyzing the effect of biotic and abiotic controls - Mud 3 Core 4 Depth 4 metaT (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300023697Metatranscriptome of freshwater microbial communities from McNutts Creek, Athens, Georgia, United States - 3-17_Aug_MT (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300023708Metatranscriptome of freshwater microbial communities from McNutts Creek, Athens, Georgia, United States - 29-17_Aug_MT (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300025316Freshwater lake bacterial and archeal communities from Alinen Mustajarvi, Finland, to study Microbial Dark Matter (Phase II) - Alinen Mustajarvi 5m metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025595Freshwater microbial communities from Crystal Bog, Wisconsin, USA - MA5M (SPAdes)EnvironmentalOpen in IMG/M
3300028619Metatranscriptome of saline water microbial communities from Sakinaw Lake, British Columbia, Canada - sak_2010_1_5_45m (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300028621Metatranscriptome of saline water microbial communities from Sakinaw Lake, British Columbia, Canada - sak_2011_1_27_40m (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300028623Metatranscriptome of saline water microbial communities from Sakinaw Lake, British Columbia, Canada - sak_2011_1_27_36m (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300029674Metatranscriptome of saline water microbial communities from Sakinaw Lake, British Columbia, Canada - sak_2013_6_6_50m (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300029685Metatranscriptome of saline water microbial communities from Sakinaw Lake, British Columbia, Canada - sak_2013_6_6_40m (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300029691Metatranscriptome of saline water microbial communities from Sakinaw Lake, British Columbia, Canada - sak_2011_5_24_40m (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300030000I_Fen_N3 coassemblyEnvironmentalOpen in IMG/M
3300034652Metatranscriptome of peat soil microbial communities from wetland fen in Alaska, United States - Frozen_pond_02R_16 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M

Geographical Distribution
Zoom:     Powered by OpenStreetMap



 ⦗Top⦘

Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
thermBogB4DRAFT_10015613300000334SoilKNGGSGQKILIDLEDKSNGSQDLHHGXVGVQDHKEQSDVIRATKKC*
JGI20219J14954_100371323300001448WetlandIKGHPKNGGGGQEFLSELEVKSHESQGSHHRWVGVQDHKEQSNVVRTT*
JGI20219J14954_100378633300001448WetlandHKGPPKNGGGGRKFLSELEAESNGSQDPRRRWVGVWAIKEQSSDVRTTKKC*
JGI20219J14954_100985413300001448WetlandHKGSPKNGGRGQKFLIELEAKSNGSQDPRHRWVGVWTNKEQSDVVRAA*
JGI20217J20340_1006413300001801WetlandHKGSPKNGGSGQWFLIELEAKSNGSQDLRHRRVGVQDHKEQSDVIRTAKKC*
JGI20219J20330_10002113300001804WetlandHKGSPKNGGRGQKFLTELEAKSNGSQDPRHGWVGVWTNKEQSDVVRAAKRC*
JGI20219J20330_10374013300001804WetlandAIKGHPKNGGGGQEFLSELEVKSHESQGSHHRWVGVQDHKEQSNVVRTT*
JGI20216J20342_100038813300001806WetlandHKGSPKNGGSGQKFLIGLEDKSNGSQDPRHRRVGVQDHKEQSDGIRTAKKC*
JGI20216J20342_100085613300001806WetlandHKRSPKNGGSGQRFLIELEAKSHGSQDPHHRWVGVWGNEEQSEEARITKKC*
JGI20218J20341_100111513300001808WetlandQVSHKGSPKNGGSGQKFLTELEAKSNGSKDLHHGWVGVWVNREQSKVARAAKKC*
JGI20218J20341_100216213300001808WetlandVQDHKEYQVSHKGSPKNGGSGQKFLIELEGKSNGSQDPRHRRVGVQDHKEQSDVIRTAKKC*
JGI20220J20339_100163513300001809WetlandHKGSPENGGSGQKFLIELEDKSIGSQDPRHRRVGVQDHKEQSDGIRTAKKC*
JGI20220J20339_100227613300001809WetlandHKGSPKNGGRGQKFLIELEAKSNGSQDPRHRWVGVWTNKEQSDVVRTT*
JGI20220J20339_100294313300001809WetlandGSPKNGGRGRKFLIELEAKSNGSQDLRHRWVGVQAGKEQSDAGRTTARCQVFF*
JGI20220J20339_100299413300001809WetlandHKGSPKNGGSGQKFLIELEDKSNGSQDPRHRRVGVQDHKEQSDGIRTAKKC*
Ga0004694J43177_1002813300002860Arctic Peat SoilSHKGSPKNGGSGQKFLTEFEAKSYGSQDLHHRWVGVWANREQSNVA*
Ga0004694J43177_1003113300002860Arctic Peat SoilVSHKGSPKNGGSGQKFLIELEAKSNGSQDLHHRRVGVQDHKEQSDVIRATKKC*
Ga0004695J43176_10001913300002862Arctic Peat SoilHKGSPKNGGSGQKFLIELEAKSNGSQDLHHGRVGVQDHKEQSDVIRATKKC*
Ga0004695J43176_10003613300002862Arctic Peat SoilHKGSPKNGGSGQKFLTEFEAKSYGSQDLHHRWVGVWANREQSNVA*
Ga0004695J43176_10407613300002862Arctic Peat SoilKGSPKNGGSGQKFLNELEAKSHGSQGPHHRWVGVWDNEEQSEEARITKKC*
Ga0003071J53072_10235613300003696GroundwaterHKRSPKNGGGGQEFLSELEAKSHGSQGSHHRWVGVQDHKE*
Ga0063230_1176183613300003938WetlandHKGSPKNGGSGQKFLIELEGKSNGSQDPRHRRVGVQDHKEQSDVIRTAKKC*
Ga0007764_1161364813300004797Freshwater LakeSPKNGGSGQRFLIELEAKSHGSQGPHHRWVGVWVNEEQSEEARITEKC*
Ga0068884_152507213300005417Freshwater LakeHKGSPKNGGRGRKFLTELEVKSNGPQGSRHGWVGVRASREQSDASPAAEKC*
Ga0075039_149110913300006423Permafrost SoilSPKNGGSGQKFLIEPEDKSNGSQDLRHGRVGVQDHKEQSDGIRTTKKC*
Ga0075037_172374823300006426Permafrost SoilGGSGQKFLIEPEDKSNGSQDLRHGRVGVQDHKEQSDGIRTTKKC*
Ga0075037_185678723300006426Permafrost SoilHKGSPKNGGSGQKFLIELEAKSNGSQDLHHGWVGVQDHKEQSDVIRATKKC*
Ga0075020_16126913300007159WatershedsKGSPGKGGSGQKFLIELEDKSNGSQDLRQGRVGVQDHKEQSDGIRTAKKC*
Ga0075025_100697213300007219WatershedsGSPKNGGSGQKFLIELEAKSHGSQGLHHRWVGVWDYEEQSEEARIT*
Ga0102692_102600013300007321Freshwater LakeNGGSGQKFLTEPEAKSNGSKDLRHRRVRVQESKEQSDVIRTTKKC*
Ga0075016_100570723300007327WatershedsKGSPKNGGSGQKFLIELEAKSHGSQDSHHRWVGVWDYEEQSEEARITKKC*
Ga0075016_108302813300007327WatershedsHKGSPKNGGSGQKFLIELEAKSHGSQDPHHRWVGVWDNEEQSEEARITKKC*
Ga0075022_100811513300007526WatershedsNGGSGRKFLIELEAKSNGSQDPRHGRVGVWAKEEQSDDVRTTKKC*
Ga0075022_168318613300007526WatershedsKGSPKNGGSGQKFLIELEAKSHGSQGLHHRWVGVWDYEEQSEEARIT*
Ga0073936_1008428053300009175Freshwater Lake HypolimnionALHLIHQVSHKRSPKNGGSGQKFLTEFEAKSYGSQDLHHGWVGVWVNEEQSKVARPTKKC
Ga0115599_100502213300009579WetlandHKGSPKNGGRGRKFLTEFEVKSNGSQDLRHGWVGVQASKEQSNAGRTA*
Ga0115599_107562213300009579WetlandKGSPKNGGSGQEFLNEFEAKSYGSQDLHHGWVGVWVNKEQSKVARPTKKC*
Ga0115599_113698013300009579WetlandGSSENGGGGQKFLSEPEAKSNGSKDSHHRRIRVQENKEQSNVIRTTKKC*
Ga0115596_101292123300009580WetlandHKGSPKNGGSGQKFLIKLEDKSNGSQDLHHGWVGVQDHKEQSDVIRATKKC*
Ga0115596_112091313300009580WetlandKGSPENGGSGQKFLIKLEDKSNGSQDLHNRRAGVQDHKEQSDVIRATKKC*
Ga0115600_100424413300009581WetlandMSPENGGSGQKFLSEPEAKSNGSKDLHHRRVGVQESREQSNAIRTTKKC*
Ga0115600_105041013300009581WetlandGGSGQRFLIELEAKSNGSQDLHHGRVGVQDHKEQSDVIRATESAECSYPC*
Ga0115600_111306413300009581WetlandKRSPENGGSGQKFLIKLEDKSNGSQDLRHGRVGVQDHKEQSDVIRATKKC*
Ga0115601_107638923300009582WetlandIKGHPKNGGGGQEFLSELEAKSHGSQGSHHRWVGVQDHKE*
Ga0115601_118512113300009582WetlandHKGSPKNGGSGQKFLIKLEDKSNGSQDLHHGRVGVQDHKEQSDVIRATKKC*
Ga0115598_102625823300009583WetlandKGSPENGGSGQKILIDLEDKSNGSQDLRHRRAGVQDHKEQSDVIRATKKC*
Ga0115598_111038613300009583WetlandHKGSPKNGGSGQKFLIKLEDKSNGSQDLHHGRVVVQDHKEQSDVIRATKKC*
Ga0115597_120186113300009584WetlandGSPKNGGSGQKFLTELEAKSVGSQDPRHRWVGVQDGREQSDVVRATERC*
Ga0115591_102965413300009586WetlandHKGSPKNGGSGQKFLIELEAKSHGSQGPHHRWVGVWVNEEQSEEARITEKC*
Ga0115591_111419913300009586WetlandHKGSPKNGGSGQKFLTELEAKSVGSQDPRHRWVGVQDGREQSDVVRATERC*
Ga0115591_121365613300009586WetlandHKGSSENGGGGQKFLSEPEAKSNGSKDSHHRRIRVQENKEQSNVIRTTKKC*
Ga0115592_113001513300009755WetlandSPKNGGSGQKFLTELEAKSVGSQDPRHRWVGVQDGREQSDVVRATERC*
Ga0115594_108149713300010131WetlandIKGHPKNGGGGQEFLSELEAKSHGSQGSHHRWVGVQDHKEQSDVVRTT*
Ga0115594_115645313300010131WetlandKGSPKNGGSGQKFLIKLEDKSNGSQDLHHGWVGVQDHKEQSDVIRATKKC*
Ga0115595_114868813300010138WetlandKRSPKNGGSGQKFLSELEVKSNGSQDLRHRWVGVQDHKEQSDDVRTA*
Ga0115593_112039413300010144WetlandHKGSPENGGSGQKFLIKLEDKSNGSQDLHHRRAGVQDHKEQSDVIRATKKC*
Ga0138293_10145113300011282WatershedsHKGSPKNGGSGQKFLIEFEAKSYGSQDPHHRWVGAWVYKEQSKEALPTKKC*
Ga0138293_10362023300011282WatershedsGGSGQKFLIELEAKSHGSQGLHHRWVGVWDYEEQSEEARIT*
Ga0151652_1014543923300011340WetlandHKGSPKNGGSGQKFLIELEDKSNGSQDPRHGRVGVQDHKEQSDGIRTAKES*
Ga0153880_131933213300012411Freshwater SedimentHKRSPKNGGSGQKFLTEFEAKSYGSQDLHHGWVGVWVNEEQAKVAHPTNMC*
Ga0153880_138843613300012411Freshwater SedimentHKGSPKNGGSGQKFLTELEAKSNGSQDLHHGWVGVWVNREQSKVARAAKKC*
Ga0157579_107819313300012696FreshwaterGSPGKDGSGQDFLTDLEAKSHGPQGLHHRRVGVQEHTEQSDVVRTT*
Ga0138288_103506013300012761Freshwater LakeHKRSPKNGGSGQKFLIELEAKSHGSQGSHHRWVGVWDNEEQSEEARITKKC*
Ga0138283_106263213300012774Freshwater LakeHKGSPKNGGSGQKFLIELEAKSHGSQGPHHRWVGVWDNEEQSEEARITKKC*
Ga0180045_11589113300016678FreshwaterHKGSPGKDGSGQDFLTDLEAKSHGPQGLHHRRVGVQEHTEQSDVVRTT
Ga0179950_107497913300019213Anaerobic Digestor SludgeKGSSKNGGRGQKFLIELEAKSNGSQDPRHSWVGVWTNKEQSDVVRTT
Ga0179949_120884513300019225Anaerobic Digestor SludgeSSKNGGRGQKFLIELEAKSNGSQDPRHSWVGVWTNKEQSDVVRTT
Ga0172287_136539613300019246WetlandNGGSGQEFLSELEVKSYGSQDPRHRWVGVQDHKEQSDDVRTA
Ga0172286_125013713300019252WetlandHKGSPENGGSGQRFLIELEAKSNGSQDLHHGRVGVQDHKEQSDVIRATESAECSYPC
Ga0172286_126679323300019252WetlandHKRSPENGGSGQKFLIKLEDKSNGSQDLRHGRVGVQDHKEQSDVIRATKKC
Ga0210356_12977513300021269EstuarineKGSPKNGGSGQKFLIELEAKSHGSQDPHHRWVGVWDNVEQSEEARITKKC
Ga0210356_14232513300021269EstuarineSPKNGGSGQKFLIELEAKSHGSQDPHHRWVGVWDYEEQSEVTRITKKC
Ga0210324_129790813300021333EstuarineHKGSPKNGGSGQKFLIELEAKSHGSQDSHHRWVGVWDYEEQSEEARITKKC
Ga0213850_119116613300021856WatershedsHKRLPKNGGRGRKFLIELETKSNGSKDPRHEWVGVWVDAERSKDTRATKKH
Ga0213851_140468013300021860WatershedsKGSPKNGGSGRKFLTESEAKSNGSQDPLHGWVGVWAKEEQSDDVRAAKKSAECSFQC
Ga0213853_1074758713300021861WatershedsHKGSPKNGGSGQKFLIELEAKSHGSQGPHHRWVGVWDNEEQSEEARITIKC
Ga0213853_1074781113300021861WatershedsHKGSPKNGGSGQKFLIELEAKSHGSQGPHHRWVGVWDNEEQSEEARITKKC
Ga0213847_108784913300021938WatershedsHKGSPKNGGSGQEFLIELEDKSNGSQDPRHRWVGVQDHKEQSDVIRTAKKC
Ga0213847_114529813300021938WatershedsKGSLKNGGSGKRFLIELEAKSNGLQDPRHRWVGVQDHKEQSDVIRTAKKC
Ga0213931_101615413300022161FreshwaterKGSPENGGSGQKFLTEPEAKSNGSKDLRHRRVGVQESREQSIVIRTTKKC
Ga0213931_101680613300022161FreshwaterHKGSPKNGGSGQKFLIELEAKSFGSQDPHHGWVGVWANRE
Ga0213932_102687313300022166FreshwaterHKGSPENGGSGQKFLIEPEAKSNGSKDLRHRRVGVQESREQSIVIRTTKKC
Ga0213857_101202513300022171WatershedsSPKNGGRGRKFLTELEAKSNGSQDLRHRWVGVQASKEQSNAGRTTKRCQVFFLML
Ga0213857_104898223300022171WatershedsGGSGQKFLIELEAKSHGSQGPHHRWVGVWDYEEQSEEARIIKKC
Ga0079039_127730623300022185Freshwater WetlandsSPKNGGSGQEFLIELEAKSNGSQDPHHRWVGVQDHKEQSDDVRTA
Ga0228706_102268913300023697FreshwaterHKGSPKNGGSGQEFLNEFEAKSYGSQDLHHGWVGVWVNEEKSKVARPTKKC
Ga0228709_105333613300023708FreshwaterHKGSPKNGGSGQKFLIELEDKSVGSQDPRQGWVGVQDHKEQSDVIRTAKKCWVFF
Ga0209697_1024766913300025316Freshwater Lake HypolimnionHLIHQVSHKRSPKNGGSGQKFLTEFEAKSYGSQDLHHGWVGVWVNEEQSKVARPTKKC
Ga0208248_109071113300025595FreshwaterHLIHQVSHKGSPKNGGSGQKFLNEFEAKSYGSQDLHHRWVGVWVNEEQSKVACSTKKC
Ga0257136_103762023300028619MarineHKGSPKNGGSGQKFLIELEAKSHGSQDPHHRWVGVWDYEEQSEEARITKKC
Ga0257142_103840113300028621MarineSHKGSPKNGGSGQKFLIELEAKSHGSQDPHHRWVGVWDYEEQSEEARITKKC
Ga0257142_104015313300028621MarineHKGSPKNGGRGRKFLIELEAKSNGSQDLRHRWVGVQAGKEQSDAGRTTARCQVFF
Ga0257141_103954013300028623MarinePVSHKGSPKNGGSGQKFLIELEAKSHGSQDPHHRWVGVWDYEEQSEEARITKKC
Ga0257141_104311723300028623MarineHKGSPKNGGSGQKFLIELEAKSNGSQDPHHRWVGVWANKEQSDVVRATKRCQVFFLMLKQKGRKWKGS
Ga0265604_11269223300029674MarineSPKNGGSGQKFLIELEAKSHGSQDPHHRWVGVWDYEEQSEEARITKKC
Ga0265603_103884323300029685MarineHKGSPKNGGSGQKFLIELEAKSHGSQDPHHRWVGVWDYEEQSEEARITKMC
Ga0265598_102898913300029691MarineKGSPKNGGSGQKFLIELEAKSHGSQDPHHRWVGVWDYEEQSEEARITKKC
Ga0265598_103367113300029691MarineKGSPKNGGRGRKFLIELEAKSNGSQDLRHRWVGVQAGKEQSDAGRTTARCQVFF
Ga0311337_1185580323300030000FenSIVVHLIHQVSHKGSPKNGGRGQRFLIELEAKSNGSQDPRHRWVRVQDSKEQSDVVRAAKRC
Ga0316598_089697_725_8503300034652Untreated Peat SoilAIKGHPKNGGGGQELLSELEAKSYGSQGSHHGWVGVQDHKE


 ⦗Top⦘


© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.