Basic Information | |
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IMG/M Taxon OID | 3300029685 Open in IMG/M |
GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0114292 | Gp0306346 | Ga0265603 |
Sample Name | Metatranscriptome of saline water microbial communities from Sakinaw Lake, British Columbia, Canada - sak_2013_6_6_40m (Metagenome Metatranscriptome) |
Sequencing Status | Permanent Draft |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Published? | N |
Use Policy | Open |
Dataset Contents | |
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Total Genome Size | 79450227 |
Sequencing Scaffolds | 9 |
Novel Protein Genes | 9 |
Associated Families | 6 |
Dataset Phylogeny | |
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Taxonomy Groups | Number of Scaffolds |
Not Available | 5 |
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Enterobacteriaceae → Escherichia | 1 |
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Enterobacteriaceae → Enterobacter → Enterobacter cloacae complex → Enterobacter hormaechei | 2 |
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales → Opitutaceae → Lacunisphaera → Lacunisphaera limnophila | 1 |
Ecosystem Assignment (GOLD) | |
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Name | Marine Microbial Communities From The Southern Atlantic Ocean Transect To Study Dissolved Organic Matter And Carbon Cycling |
Type | Environmental |
Taxonomy | Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From The Southern Atlantic Ocean Transect To Study Dissolved Organic Matter And Carbon Cycling |
Alternative Ecosystem Assignments | |
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Environment Ontology (ENVO) | aquatic biome → lake → saline water |
Earth Microbiome Project Ontology (EMPO) | Free-living → Saline → Water (saline) |
Location Information | ||||||||
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Location | Canada: Sakinaw lake, British Columbia | |||||||
Coordinates | Lat. (o) | 49.68 | Long. (o) | -124.009 | Alt. (m) | N/A | Depth (m) | 40 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F000344 | Metagenome / Metatranscriptome | 1257 | Y |
F000388 | Metagenome / Metatranscriptome | 1201 | Y |
F004323 | Metagenome / Metatranscriptome | 443 | Y |
F025295 | Metagenome / Metatranscriptome | 202 | Y |
F098292 | Metagenome / Metatranscriptome | 104 | N |
F105212 | Metagenome / Metatranscriptome | 100 | Y |
Scaffold | Taxonomy | Length | IMG/M Link |
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Ga0265603_1018205 | Not Available | 868 | Open in IMG/M |
Ga0265603_1018556 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Enterobacteriaceae → Escherichia | 859 | Open in IMG/M |
Ga0265603_1019653 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Enterobacteriaceae → Enterobacter → Enterobacter cloacae complex → Enterobacter hormaechei | 832 | Open in IMG/M |
Ga0265603_1019998 | All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales → Opitutaceae → Lacunisphaera → Lacunisphaera limnophila | 824 | Open in IMG/M |
Ga0265603_1020505 | Not Available | 812 | Open in IMG/M |
Ga0265603_1029462 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Enterobacteriaceae → Enterobacter → Enterobacter cloacae complex → Enterobacter hormaechei | 665 | Open in IMG/M |
Ga0265603_1035385 | Not Available | 603 | Open in IMG/M |
Ga0265603_1038843 | Not Available | 572 | Open in IMG/M |
Ga0265603_1045068 | Not Available | 528 | Open in IMG/M |
Scaffold ID | Protein ID | Family | Sequence |
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Ga0265603_1018205 | Ga0265603_10182051 | F025295 | DEIMVTGPGEATELLRRREVLIPEKLKFITRKSNLQKQI |
Ga0265603_1018556 | Ga0265603_10185562 | F004323 | MPRDGLRRLEGRATPAVAIHSPVTRDYPSRALSDVFQAAALRLFYQGTR |
Ga0265603_1019653 | Ga0265603_10196531 | F000344 | MRPRHPHAAESGVGKHTARESESAQACAAGKERVANAHSHKLASE |
Ga0265603_1019998 | Ga0265603_10199981 | F000344 | MRPKHPHVAESGVGKHTARESESVKVCAAGKERVVNAHSYKL |
Ga0265603_1020505 | Ga0265603_10205052 | F000344 | MRPKHPPAAESGVGKHTARESERAQSCATGKERVANA |
Ga0265603_1029462 | Ga0265603_10294621 | F004323 | MPFDGLRRLEGRATPAVATHSPVTRDYPSRALSGVFQAAALRLF |
Ga0265603_1035385 | Ga0265603_10353851 | F000388 | KVIKVTKEYFQTEDEKVYFFEPLEKEISVEDMQKIVDANEKLVKELKNAKD |
Ga0265603_1038843 | Ga0265603_10388432 | F105212 | HKGSPKNGGSGQKFLIELEAKSHGSQDPHHRWVGVWDYEEQSEEARITKMC |
Ga0265603_1045068 | Ga0265603_10450681 | F098292 | MSDVTRRIDRWQKKYSPAQAKATLDLLQEGMRQRYEAATVEMAAMEMKVKEVLNQQGVHTTNYVPYLSYARQLWKLGRQQHITGESFAMASEVLLQKWAGRGQDPDVLAAIRSQVFNSPPPAP |
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