NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300029674

3300029674: Metatranscriptome of saline water microbial communities from Sakinaw Lake, British Columbia, Canada - sak_2013_6_6_50m (Metagenome Metatranscriptome)



Overview

Basic Information
IMG/M Taxon OID3300029674 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0114292 | Gp0306347 | Ga0265604
Sample NameMetatranscriptome of saline water microbial communities from Sakinaw Lake, British Columbia, Canada - sak_2013_6_6_50m (Metagenome Metatranscriptome)
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size54447410
Sequencing Scaffolds17
Novel Protein Genes17
Associated Families13

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
Not Available11
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → Steroidobacter → Steroidobacter denitrificans2
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Enterobacteriaceae → Enterobacter → Enterobacter cloacae complex → Enterobacter hormaechei1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Enterobacteriaceae → Escherichia1
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales → Opitutaceae → Lacunisphaera → Lacunisphaera limnophila1
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → candidate division WOR-3 → candidate division WOR-3 bacterium1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameMarine Microbial Communities From The Southern Atlantic Ocean Transect To Study Dissolved Organic Matter And Carbon Cycling
TypeEnvironmental
TaxonomyEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From The Southern Atlantic Ocean Transect To Study Dissolved Organic Matter And Carbon Cycling

Alternative Ecosystem Assignments
Environment Ontology (ENVO)aquatic biome → lake → saline water
Earth Microbiome Project Ontology (EMPO)Free-living → Saline → Water (saline)

Location Information
LocationCanada: Sakinaw lake, British Columbia
CoordinatesLat. (o)49.68Long. (o)-124.009Alt. (m)N/ADepth (m)50
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000344Metagenome / Metatranscriptome1257Y
F000388Metagenome / Metatranscriptome1201Y
F004178Metagenome / Metatranscriptome449Y
F004323Metagenome / Metatranscriptome443Y
F025295Metagenome / Metatranscriptome202Y
F046170Metagenome / Metatranscriptome151Y
F052683Metagenome / Metatranscriptome142Y
F060598Metagenome / Metatranscriptome132Y
F071959Metagenome / Metatranscriptome121Y
F088317Metagenome / Metatranscriptome109Y
F089118Metagenome / Metatranscriptome109Y
F101433Metagenome / Metatranscriptome102Y
F105212Metagenome / Metatranscriptome100Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0265604_100258Not Available4719Open in IMG/M
Ga0265604_105570Not Available1350Open in IMG/M
Ga0265604_110065Not Available990Open in IMG/M
Ga0265604_111627Not Available920Open in IMG/M
Ga0265604_112692Not Available875Open in IMG/M
Ga0265604_112972All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → Steroidobacter → Steroidobacter denitrificans866Open in IMG/M
Ga0265604_113559Not Available844Open in IMG/M
Ga0265604_114853Not Available803Open in IMG/M
Ga0265604_115169Not Available794Open in IMG/M
Ga0265604_115654Not Available781Open in IMG/M
Ga0265604_115657Not Available781Open in IMG/M
Ga0265604_115934All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → Steroidobacter → Steroidobacter denitrificans774Open in IMG/M
Ga0265604_116326All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Enterobacteriaceae → Enterobacter → Enterobacter cloacae complex → Enterobacter hormaechei763Open in IMG/M
Ga0265604_116380All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Enterobacteriaceae → Escherichia762Open in IMG/M
Ga0265604_116475All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales → Opitutaceae → Lacunisphaera → Lacunisphaera limnophila759Open in IMG/M
Ga0265604_125946All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → candidate division WOR-3 → candidate division WOR-3 bacterium590Open in IMG/M
Ga0265604_127146Not Available576Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0265604_100258Ga0265604_1002582F046170MIRIEDFGEIAYGGAVTLTEWWDNKRIDQGKIGAKDVFKKASFYTYLGVGLTATLMSVFGWMKRYERWEEHVSHGFLYDLPRFAYGLTKALGAGGKRGSDSSAVQEAQRILNEKMRAKALGSGRTADRSYQQEFETVAPHAF
Ga0265604_105570Ga0265604_1055701F060598GPRRVSVDGHNLPRYTRIVAVTKGKIGNTGRVLKAEELVLAFDLDAKRWLALRVYQGSKKLRLALPEIVAELRRHRDEGKGPWRLFFDKGDYKGQIFRDLAAMEEVHFYCPAVRYPDNVAQWERLTEEDFDPEPFVFAKHADLSPEERPVYRLADTEMTINVWENGQVVGTVTLRAVVIHAPQGQKPAERWPVVYLTDDGQIDARALANEFGDHWGQEFAHRVGKHDLCLDILPPGYTLTSQRDEEGQLQRQVEYDTTAFFLSAWLRCLVFNLMSLFAQELEGEYAKMWAGTLLRKFIRRPATLYLVGNELHVVFDPFPDQEALRPLLDRLNAKRVALSWLNGLVVQFSIARDEPLHPLTKPEKRQRLFGDD
Ga0265604_110065Ga0265604_1100651F052683MRSILKQKKAIMGPVISVFVMVLVISILAGLTFLFVSQLKTQVYNTAEGNSSSTAYQAVNDTEAAGATIVGYLPLIFLAVIFGAILTLVLRIILPYINLGQTMGGF
Ga0265604_111627Ga0265604_1116272F089118WVILFAVLVGALVLFSLKSMQTGTRLSQRLGEIEQARETLSGMFPDSRFRVQFSAPKPGIRNLVITIQPGHADSGAITQMVESAESVARRKVDLTGYDSLVVAVFDSVYRTVPAR
Ga0265604_112692Ga0265604_1126922F105212SPKNGGSGQKFLIELEAKSHGSQDPHHRWVGVWDYEEQSEEARITKKC
Ga0265604_112972Ga0265604_1129721F088317MPGPEDKSSYPPRPTLTQDDVNKDRPTTRRDAYEGIKAPPLPPMDKSQILRTIESGFKEPEEAGRYVMRPSADLPYRVLSLNTKFHSCNTRHLKEIGAFRTLAPELFGDAGYKLVDDAYASFAYSEFATARARGQLKNAPNCTAREIGAFIATVYDIQNFPIVIAEASDKRVRIQLYKGLPIYCPYDVRRGDYRLCAATAGYERELTKLCNPKLRAYLSRTKAIGDDCCELTIEPDPNA
Ga0265604_113559Ga0265604_1135592F025295VTGPGEATELLRRREVLIPEKLKFITRKSNLQKQI
Ga0265604_114853Ga0265604_1148531F000344MRPKHPHAAESGVGKHTARESESAKRCAAGKERVAN
Ga0265604_115169Ga0265604_1151692F000344MRPTSAHAALSGVGEHTARESESAKCCADGKERVAN
Ga0265604_115654Ga0265604_1156541F071959MASRNYLVMSNDMTFTDKKEYRTKALAAGLERCGLKSIGDINSDVPGLQAIPIGNKSARVAAIKSFIETGVWPKTIDQRELAPLTDFVAAAAQDFWQTIALGAIGTVYTCLNALPAYTLPAGRLMVCYGVSVDVAVLPVSRLIFRRGGVAGNIQAQFDMQPLGTRLETAAFFSEPVVIDPQELFAI
Ga0265604_115657Ga0265604_1156571F004323MPLDGLRRLEGKATPVVASLSPVTRDYPSRALSGVFQAAALRL
Ga0265604_115934Ga0265604_1159341F088317MPGPEDKISYPAKQTISQDALNATAPKVRTDVYKGVQVPALPPLEKSQILRSIESGFKETEDPTRYIMNPPGDLPYRLLPLSTKFVSCNTRHLKEIGAFRTLCPELFGDAGYKLVDDAYASFAFGEFKTAQTRGQLKNAPNCTAKEIGAFIATVYDIQNFPVVIAEATDKRVRIQLYKGLPVYCPYDTRRGDYRLCAATAGYERELTKLCNPKLHAFLSRTKAIGDDCCELTIEPDPNA
Ga0265604_116326Ga0265604_1163261F004323MPLDGLHRLEGRTTPAVAIHSPVTRDYPSRALSGVFQAAALRLF
Ga0265604_116380Ga0265604_1163801F004323MPRNGLRRLEGRATPAVAIHSPVTRDYPSRALSDVFQAAALRL
Ga0265604_116475Ga0265604_1164752F004178MRPTASHAAKSSVGKHTARESEAPNVCDWERARGER
Ga0265604_125946Ga0265604_1259461F101433MKRRVAFVLLAVIGIAAVVLGIRFGDPETIHRFAAQIWLSCMGLV
Ga0265604_127146Ga0265604_1271461F000388KEYFQTEDEKVYFFEPLEKEISVEDMQKIVDANEKLVKELKNAKD
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